FvH4_4g01130

Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
1058081 .. 1059685
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01130.t1

Sequence Viewer

Length: 564 bp
ATGGCTATGGAGGCATGGTACATGGATGAGAGCGATGCAGACCCAAGGCTTCCTCACCATTTGTGCCCCAAAGAGTCTGTTCCTTTGGAACATTTGGCTGAGCTGGGTGTGCTCTACTGGCACTTGAACCCCCAGGACTATGAGAACGATGAAAAACTTCGCCAGATTAGAGAAACTAGGGGTTACAATTACATGGATTTGCTTGACATATGCCCTGAGAAATTGGACAACTATGAGGAGAAGCTGAAGAACTTCTACACAGAGCACATTCATGGTGATGAAGAGATACGTTACTGTTTAGAAGGATGTGGATACTTTGATGTCCGAGATAAGGATGACCGGTGGATTAGAATCTGGATTAAGGCCGGCGATCTTATCATTTTACCTGCCGGAATTTACCACAGGTTCACTCTAGATACCAGCAACTATATAAAGTTGATGAGGTTGTTTGTGGGAGAGCCTGTGTGGACTGCTTACAATCGACCACAGGAAGAACATCCAGCCAGAAAGGAGTACATTGAGAGCTTCACTAAGAAAGTTGGAGTGGCATTGGAAGCTCATTGA

Protein Analysis

188

Amino Acids

22.37

Weight (kDa)

5.1

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARD PF03079 5 - 158 1.2e-60 ARD/ARD' family
AraC_binding PF02311 85 - 146 1e-05 AraC-like ligand binding domain
Cupin_2 PF07883 88 - 142 8.6e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014076)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 2 cut(s) 20, 515
AfiI CCNNNNNNNGG 1 cut(s) 331
AgeI ACCGGT 1 cut(s) 339
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 4 cut(s) 103, 244, 525, 557
AluI AGCT 4 cut(s) 103, 244, 525, 557
Alw21I GWGCWC 2 cut(s) 114, 267
AoxI GGCC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 393
AsiGI ACCGGT 1 cut(s) 339
Asp700I GAANNNNTTC 2 cut(s) 156, 251
AsuHPI GGTGA 2 cut(s) 47, 287
BaeGI GKGCMC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
Bbv12I GWGCWC 2 cut(s) 114, 267
BciT130I CCWGG 1 cut(s) 134
BciVI GTATCC 1 cut(s) 305
BfaI CTAG 2 cut(s) 177, 413
BfuAI ACCTGC 1 cut(s) 394
BfuI GTATCC 1 cut(s) 305
BlpI GCTNAGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 44, 132
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 3 cut(s) 32, 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse118I RCCGGY 2 cut(s) 339, 365
Bse1I ACTGG 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 44, 132
BseGI GGATG 4 cut(s) 31, 311, 340, 496
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 90, 207
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 365
BshTI ACCGGT 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 114, 267
BsiSI CCGG 3 cut(s) 340, 366, 390
BslI CCNNNNNNNGG 1 cut(s) 331
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 3 cut(s) 68, 114, 267
Bsp143I GATC 1 cut(s) 370
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 2 cut(s) 91, 208
BspMI ACCTGC 1 cut(s) 394
BsrFI RCCGGY 2 cut(s) 339, 365
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 2 cut(s) 339, 365
BssECI CCNNGG 2 cut(s) 44, 132
BssMI GATC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 3 cut(s) 99, 216, 531
BstF5I GGATG 4 cut(s) 31, 311, 340, 496
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 4 cut(s) 11, 109, 118, 554
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 68
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 365
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 4 cut(s) 31, 311, 340, 496
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 367
Cfr10I RCCGGY 2 cut(s) 339, 365
Csp6I GTAC 2 cut(s) 19, 514
CspAI ACCGGT 1 cut(s) 339
CviAII CATG 4 cut(s) 15, 22, 193, 272
CviQI GTAC 2 cut(s) 19, 514
DdeI CTNAG 3 cut(s) 99, 216, 531
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 4 cut(s) 18, 25, 196, 275
FatI CATG 4 cut(s) 14, 21, 192, 271
FauNDI CATATG 1 cut(s) 209
FokI GGATG 4 cut(s) 38, 318, 347, 483
FspBI CTAG 2 cut(s) 177, 413
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 365
HapII CCGG 3 cut(s) 340, 366, 390
Hin1II CATG 4 cut(s) 18, 25, 196, 275
HinfI GANTC 2 cut(s) 74, 351
HpaII CCGG 3 cut(s) 340, 366, 390
HphI GGTGA 2 cut(s) 47, 287
Hpy166II GTNNAC 2 cut(s) 408, 468
Hpy188I TCNGA 1 cut(s) 326
Hpy188III TCNNGA 2 cut(s) 355, 413
Hpy8I GTNNAC 2 cut(s) 408, 468
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 109, 118, 554
HpyF3I CTNAG 3 cut(s) 99, 216, 531
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 4 cut(s) 18, 25, 196, 275
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 1 cut(s) 370
LweI GCATC 1 cut(s) 25
MaeI CTAG 2 cut(s) 177, 413
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 182, 290
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 3 cut(s) 259, 293, 503
MhlI GDGCHC 3 cut(s) 68, 114, 267
MluCI AATT 3 cut(s) 187, 221, 393
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 4 cut(s) 4, 63, 229, 435
MroNI GCCGGC 1 cut(s) 365
MroXI GAANNNNTTC 2 cut(s) 156, 251
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 270, 276
MspI CCGG 3 cut(s) 340, 366, 390
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 11, 109, 118, 554
NaeI GCCGGC 1 cut(s) 367
NdeI CATATG 1 cut(s) 209
NdeII GATC 1 cut(s) 370
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 4 cut(s) 18, 25, 196, 275
PdiI GCCGGC 1 cut(s) 367
PdmI GAANNNNTTC 2 cut(s) 156, 251
PfeI GAWTC 1 cut(s) 351
PinAI ACCGGT 1 cut(s) 339
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 132
RsaI GTAC 2 cut(s) 20, 515
RsaNI GTAC 2 cut(s) 19, 514
RseI CAYNNNNRTG 2 cut(s) 270, 276
SaqAI TTAA 1 cut(s) 360
Sau3AI GATC 1 cut(s) 370
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 3 cut(s) 68, 114, 267
SetI ASST 8 cut(s) 105, 246, 292, 388, 407, 446, 527, 559
SfaNI GCATC 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 270, 276
Sse9I AATT 3 cut(s) 187, 221, 393
SspMI CTAG 2 cut(s) 177, 413
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 481
TasI AATT 3 cut(s) 187, 221, 393
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TspDTI ATGAA 3 cut(s) 165, 260, 294
XapI RAATTY 1 cut(s) 393
XbaI TCTAGA 1 cut(s) 412
XmnI GAANNNNTTC 2 cut(s) 156, 251
XspI CTAG 2 cut(s) 177, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.