Rorug03G0312800

Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
33497284 .. 33500148
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0312800.1

Sequence Viewer

Length: 354 bp
ATGGATGTATTGTACTTACAGTTGCAAGCTTCTGATGCTCTCGGCCTTTTGGAGATCACAAAGAAACAATTACAAGGGTCAAAGTCTGAGCATGCACCTAATATCGAAGCTGAGAATGCACTATTTAAATGTATATTTGCTTACAAAGAGTTCGTAACTGAGAGATCAATAATCCCTGAGTCTCCTGAAACAAAGGTCGAGTATCTTAAATGTTTGAAGCATCTTTTGAGCTTGAATAGTGATAGCACTACAGAAAGAACACAGCACTCTACTAGAGTCAATTTGCAAGATCTGAGAGACGAAATTAAGCGTCTTGAAGTTGAACTTTCTCCTCATAGGAAACGCAAAATTTGA

Protein Analysis

117

Amino Acids

13.54

Weight (kDa)

6.91

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014076)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 1 cut(s) 14
AgsI TTSAA 4 cut(s) 217, 235, 317, 323
AluBI AGCT 3 cut(s) 29, 110, 231
AluI AGCT 3 cut(s) 29, 110, 231
Alw26I GTCTC 2 cut(s) 186, 291
AoxI GGCC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 186, 291
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 249
BglII AGATCT 1 cut(s) 289
BmsI GCATC 2 cut(s) 25, 229
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 5 cut(s) 78, 102, 150, 168, 284
BseRI GAGGAG 1 cut(s) 321
BshFI GGCC 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 186, 291
BsmBI CGTCTC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 54, 164, 289
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 5 cut(s) 79, 103, 151, 169, 285
BssMI GATC 3 cut(s) 54, 164, 289
Bst4CI ACNGT 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 27, 93
BstDEI CTNAG 5 cut(s) 87, 111, 159, 177, 293
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 57, 167, 292
BstMAI GTCTC 2 cut(s) 186, 291
BstMBI GATC 3 cut(s) 54, 164, 289
BstMWI GCNNNNNNNGC 2 cut(s) 35, 116
BstNSI RCATGY 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 27, 93
CseI GACGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 92
CviJI RGCY 4 cut(s) 29, 45, 110, 231
CviKI_1 RGCY 4 cut(s) 29, 45, 110, 231
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 5 cut(s) 87, 111, 159, 177, 293
DpnI GATC 3 cut(s) 56, 166, 291
DpnII GATC 3 cut(s) 54, 164, 289
DraI TTTAAA 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 1 cut(s) 95
FaiI YATR 3 cut(s) 93, 134, 336
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 1 cut(s) 91
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 45
HgaI GACGC 1 cut(s) 299
Hin1II CATG 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 2 cut(s) 179, 276
Hpy188I TCNGA 3 cut(s) 34, 88, 294
Hpy188III TCNNGA 2 cut(s) 185, 314
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 4 cut(s) 25, 95, 119, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 116
HpyF3I CTNAG 5 cut(s) 87, 111, 159, 177, 293
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 3 cut(s) 54, 164, 289
LpnPI CCDG 2 cut(s) 189, 198
LweI GCATC 2 cut(s) 25, 229
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 56, 166, 291
MboI GATC 3 cut(s) 54, 164, 289
MflI RGATCY 1 cut(s) 289
MluCI AATT 4 cut(s) 68, 280, 303, 348
MlyI GAGTC 2 cut(s) 188, 285
MnlI CCTC 1 cut(s) 342
MseI TTAA 3 cut(s) 126, 207, 306
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 35, 116
NdeII GATC 3 cut(s) 54, 164, 289
NlaIII CATG 1 cut(s) 95
NmeAIII GCCGAG 1 cut(s) 21
NspI RCATGY 1 cut(s) 95
PaeI GCATGC 1 cut(s) 95
PctI GAATGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 187, 284
PpsI GAGTC 2 cut(s) 187, 284
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 126, 207, 306
Sau3AI GATC 3 cut(s) 54, 164, 289
SchI GAGTC 2 cut(s) 188, 285
SetI ASST 5 cut(s) 31, 100, 112, 198, 233
SfaNI GCATC 2 cut(s) 25, 229
SfcI CTRYAG 1 cut(s) 249
SmiI ATTTAAAT 1 cut(s) 127
SphI GCATGC 1 cut(s) 95
Sse9I AATT 4 cut(s) 68, 280, 303, 348
SspMI CTAG 1 cut(s) 273
SwaI ATTTAAAT 1 cut(s) 127
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 105, 198
TasI AATT 4 cut(s) 68, 280, 303, 348
TatI WGTACW 1 cut(s) 12
Tru1I TTAA 3 cut(s) 126, 207, 306
Tru9I TTAA 3 cut(s) 126, 207, 306
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 95
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.