Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014587

Physical Location & Seq

Genomic Coordinates Reverse (-)

17694680 .. 17696690

Gene Structure 2011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAACTCACCTATCAATTCTTCATCTTCTGGTTCTTTTTACCATTCTTTGCAATCTCCGGTGATGATGATTATAAAAATCTGATCTTTAAAGGTTGTGCAAATCAGAAATCTCCAGACCCAACTGGTGTTTTCTCTCAGAATCTCAAAAACTTATTCACTTCTTTAGTTTCTCAATCATCACAAAGCTCTTTCGCTTCCGTAACCTCCGGAACTGATAACACCACCGCCGTGATCGGTGTTTTTCAGTGCCGTGGCGATCTCCAAAACGCTCAGTGTTACGATTGCGTCTCCAAAATCCCTAAACTCGTTTCTAAACTCTGCGGTGGCGGCAGAGATGACGGTAATGTGGTGGCGGCTCGTGTTCACCTCGCTGGATGTTATATCCGGTATGAGAGTTCAGGATTCCGGCAAACTTCCGGTACGGAGATGTTGTTCCGTGTCTGTGGGAAAAAAGATTCTAACGATCCTGGGTTTGTCGGGAAAAGGGAGACGGCGTTTGGTATGGCGGAGAACGGCGTGAAAACTGGATCATCCGGTGGTGGTGGTGGCGGAGGAGGTTTTTACGCGGGGCAGTATGAGTCGGTGTATGTGTTGGGACAGTGTGAGGGTAGTTTGGGAAATTCAGATTGTGGGGAATGTGTGAAAGATGGATTTGAGAAAGCAAAGAGTGAGTGTGGAGAGTCGAACTCGGGACAAGTTTACCTTCAGAAGTGCTTCGTTAGCTATAGTTACTACTCTCATGGTGTTCCCAACATAGAGCCATTATCAGGTGGAGAGAAGAGACAACACACAGAAAGGACGATAGCTTTGGCGGTGGGAGGAGTTTTTGTTTTAGGGTTTGTGATTGTTTGTTTGTTGGTTTTGAGGTCTGCCATGAAGAAGAAGAGTAATAAATATGATGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

303

Amino Acids

32.61

Weight (kDa)

8.34

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	33 - 133	4.8e-16	Salt stress response/antifungal
Stress-antifung	PF01657	191 - 245	2.3e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43980
fragaria_vesca	FvH4_2g20590 FvH4_2g20590
malus_domestica	MD00G1060400.v1.1
prunus_persica	Prupe.8G216200_v2.0.a1
pyrus_communis	pycom10g15290
rosa_chinensis	RchiOBHm_Chr6g0286761
rosa_laevigata	RLG00000012544
rosa_multiflora	Rmu_sc0007546.1_g000011 Rmu_sc0036247.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182030
rosa_rugosa	Rorug06G0182800
rosa_samantha	Rh6AG295300 Rh6BG299300 Rh6CG299200 Rh6DG291100
rosa_wichuraiana	Rw6G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AccII	CGCG	1 cut(s)	569
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	8 cut(s)	228, 324, 330, 356, 509, 552, 569, 815
AclWI	GGATC	2 cut(s)	461, 538
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	692
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	469
AleI	CACNNNNGTG	1 cut(s)	230
AloI	GAACNNNNNNTCC	2 cut(s)	419, 451
AluBI	AGCT	3 cut(s)	189, 726, 809
AluI	AGCT	3 cut(s)	189, 726, 809
Alw26I	GTCTC	3 cut(s)	295, 485, 778
AlwI	GGATC	2 cut(s)	461, 538
Ama87I	CYCGRG	1 cut(s)	691
Aor13HI	TCCGGA	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	622
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
Asp700I	GAANNNNTTC	1 cut(s)	716
AsuHPI	GGTGA	2 cut(s)	74, 359
AvaI	CYCGRG	1 cut(s)	691
BauI	CACGAG	1 cut(s)	360
BccI	CCATC	1 cut(s)	644
BceAI	ACGGC	4 cut(s)	215, 237, 510, 532
BciT130I	CCWGG	1 cut(s)	471
BcoDI	GTCTC	3 cut(s)	295, 485, 778
BfmI	CTRYAG	1 cut(s)	727
BisI	GCNGC	2 cut(s)	331, 357
BlsI	GCNGC	2 cut(s)	332, 358
Bme1390I	CCNGG	1 cut(s)	471
BmeT110I	CYCGRG	1 cut(s)	691
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	892
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
BpmI	CTGGAG	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	253, 470
BsaWI	WCCGGW	5 cut(s)	59, 209, 387, 419, 536
BsaXI	ACNNNNNCTCC	6 cut(s)	419, 449, 482, 512, 816, 846
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
Bse1I	ACTGG	2 cut(s)	130, 532
BseAI	TCCGGA	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	253, 470
BseGI	GGATG	2 cut(s)	383, 533
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseMII	CTCAG	2 cut(s)	152, 287
BseNI	ACTGG	2 cut(s)	130, 532
BseRI	GAGGAG	2 cut(s)	570, 837
Bsh1236I	CGCG	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	691
BsiSI	CCGG	6 cut(s)	60, 210, 388, 409, 420, 537
BslFI	GGGAC	2 cut(s)	612, 708
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmAI	GTCTC	3 cut(s)	295, 485, 778
BsmBI	CGTCTC	2 cut(s)	295, 485
BsmFI	GGGAC	2 cut(s)	612, 708
BsoBI	CYCGRG	1 cut(s)	691
Bsp13I	TCCGGA	1 cut(s)	209
Bsp143I	GATC	5 cut(s)	84, 234, 259, 466, 530
BspACI	CCGC	8 cut(s)	228, 324, 330, 356, 509, 552, 569, 815
BspCNI	CTCAG	2 cut(s)	151, 286
BspEI	TCCGGA	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	569
BspPI	GGATC	2 cut(s)	461, 538
BsrI	ACTGG	2 cut(s)	130, 532
BssECI	CCNNGG	2 cut(s)	253, 470
BssMI	GATC	5 cut(s)	84, 234, 259, 466, 530
BssSI	CACGAG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	344, 603
Bst6I	CTCTTC	2 cut(s)	776, 881
BstDEI	CTNAG	2 cut(s)	138, 273
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	383, 533
BstFNI	CGCG	1 cut(s)	569
BstKTI	GATC	5 cut(s)	87, 237, 262, 469, 533
BstMAI	GTCTC	3 cut(s)	295, 485, 778
BstMBI	GATC	5 cut(s)	84, 234, 259, 466, 530
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 723
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	727
BstUI	CGCG	1 cut(s)	569
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	383, 533
BtsIMutI	CAGTG	3 cut(s)	254, 281, 608
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	2 cut(s)	743, 877
CviJI	RGCY	5 cut(s)	189, 359, 726, 763, 809
CviKI_1	RGCY	5 cut(s)	189, 359, 726, 763, 809
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	2 cut(s)	138, 273
DpnI	GATC	5 cut(s)	86, 236, 261, 468, 532
DpnII	GATC	5 cut(s)	84, 234, 259, 466, 530
DraI	TTTAAA	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	776, 881
EarI	CTCTTC	2 cut(s)	776, 881
EciI	GGCGGA	2 cut(s)	524, 567
Eco57I	CTGAAG	1 cut(s)	692
Eco88I	CYCGRG	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	469
Esp3I	CGTCTC	2 cut(s)	295, 485
FaeI	CATG	2 cut(s)	746, 880
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	2 cut(s)	612, 708
FatI	CATG	2 cut(s)	742, 876
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	331, 357
FokI	GGATG	2 cut(s)	390, 520
Fsp4HI	GCNGC	2 cut(s)	331, 357
GluI	GCNGC	2 cut(s)	331, 357
GsuI	CTGGAG	1 cut(s)	99
HapII	CCGG	6 cut(s)	60, 210, 388, 409, 420, 537
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	746, 880
HinfI	GANTC	5 cut(s)	142, 405, 458, 581, 683
HpaII	CCGG	6 cut(s)	60, 210, 388, 409, 420, 537
HphI	GGTGA	2 cut(s)	74, 359
Hpy166II	GTNNAC	2 cut(s)	367, 703
Hpy188I	TCNGA	5 cut(s)	84, 108, 141, 628, 711
Hpy188III	TCNNGA	5 cut(s)	116, 210, 402, 481, 693
Hpy8I	GTNNAC	2 cut(s)	367, 703
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	2 cut(s)	344, 603
HpyCH4V	TGCA	2 cut(s)	53, 101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 723
HpyF3I	CTNAG	2 cut(s)	138, 273
Hsp92II	CATG	2 cut(s)	746, 880
Kpn2I	TCCGGA	1 cut(s)	209
Kzo9I	GATC	5 cut(s)	84, 234, 259, 466, 530
LweI	GCATC	1 cut(s)	892
MaeIII	GTNAC	3 cut(s)	202, 278, 731
MalI	GATC	5 cut(s)	86, 236, 261, 468, 532
MboI	GATC	5 cut(s)	84, 234, 259, 466, 530
MboII	GAAGA	6 cut(s)	13, 19, 793, 892, 895, 898
MluCI	AATT	2 cut(s)	17, 622
MlyI	GAGTC	2 cut(s)	590, 692
MnlI	CCTC	7 cut(s)	217, 380, 548, 551, 601, 815, 861
MroI	TCCGGA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	6 cut(s)	60, 210, 388, 409, 420, 537
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	2 cut(s)	330, 723
NdeII	GATC	5 cut(s)	84, 234, 259, 466, 530
NlaIII	CATG	2 cut(s)	746, 880
OliI	CACNNNNGTG	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	3 cut(s)	142, 405, 458
PkrI	GCNGC	2 cut(s)	332, 358
PleI	GAGTC	2 cut(s)	589, 691
PpsI	GAGTC	2 cut(s)	589, 691
PsiI	TTATAA	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	331, 357
Sau3AI	GATC	5 cut(s)	84, 234, 259, 466, 530
SchI	GAGTC	2 cut(s)	590, 692
ScrFI	CCNGG	1 cut(s)	471
SfaNI	GCATC	1 cut(s)	892
SfcI	CTRYAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	17, 622
SsiI	CCGC	8 cut(s)	228, 324, 330, 356, 509, 552, 569, 815
StyD4I	CCNGG	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	344, 603
TaqI	TCGA	1 cut(s)	686
TasI	AATT	2 cut(s)	17, 622
TauI	GCSGC	2 cut(s)	333, 359
TfiI	GAWTC	3 cut(s)	142, 405, 458
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	3 cut(s)	254, 281, 608
TspDTI	ATGAA	3 cut(s)	13, 17, 893
TspGWI	ACGGA	3 cut(s)	190, 428, 440
TspRI	CASTG	3 cut(s)	254, 281, 608
XapI	RAATTY	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.