Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014587

Physical Location & Seq

Genomic Coordinates Reverse (-)

17257735 .. 17259768

Gene Structure 2034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20590.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATTTCCCCACAAAACCATCCCTTTTGTTCTCCTCTGCTCTGCTTTTCCTCACAACCCTTGCCTCCTTCTCCTCTCTAGCCACAGCTGTGGACTACACATCCTTGGTTTACAAGGGCTGTGCTAATCAAAAATTCCAAGACTCAACTGGGATATACTCCCAAAACCTCCAATCTCTATTCAACTCTCTAGTCTCTTCAGCCCAGCAGAAAAAGACCTTCTTCACCACCACCTCCGGTGACTCCCCAAATGCAATCACAGGTCTCTACCAGTGCAGAGGAGACCTCTCCACAGCTGATTGCTCCACCTGTGTCACAAAGCTTCCATCTTTAACCCAAAAACTCTGTGGAGAAGTCATAGCAGCTAGAGTCCAGCTCAGTGGGTGCTACTTGCGTTATGAAATTTCTGGGTTGAAGCAGGTTTCAGGCACACAGCTGCTCTACAAGATTTGCAATAAGGCTAGTGGGTCTAGTGATTTTCAAGAGAAAAGGGACTCTGCTTTTGAGAAACTGGAGAGTGGGATCAAGAATGGTAGTGTGTTGTTCTATACTGGGAGCTATGAGTCTGTTTATGTTTTAGGCCAGTGTGAGGGAGATTTGGGCAGCAGTGATTGTGTTGATTGTGTCAAAAGTGCTTCTGAAAAAGCTGGTTCAGAGTGTGGTGATGCAGTTTCTGGGCAGATTTATCAGCACAAGTGCTATATCAGCTACAGCTACTATGCTAAAGGTGTCCCAAACTTAACTTCTTCTTCAGGGACTGTAGGGTCTAACCATCACACAACACAGAAGACAGTGGCCATTGTTGTGGGAGGTGTTGCAGCTGTGGGGTTTGTATGTGTATGCCTGATGTTTATCAGGTCCTTGATCAAGAAGCGTAGTGCCAACAAATATGGAGACTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

302

Amino Acids

32.3

Weight (kDa)

8.44

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	41 - 134	2.1e-19	Salt stress response/antifungal
Stress-antifung	PF01657	153 - 239	1.2e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43980
fragaria_vesca	FvH4_2g20590 FvH4_2g20590
malus_domestica	MD00G1060400.v1.1
prunus_persica	Prupe.8G216200_v2.0.a1
pyrus_communis	pycom10g15290
rosa_chinensis	RchiOBHm_Chr6g0286761
rosa_laevigata	RLG00000012544
rosa_multiflora	Rmu_sc0007546.1_g000011 Rmu_sc0036247.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182030
rosa_rugosa	Rorug06G0182800
rosa_samantha	Rh6AG295300 Rh6BG299300 Rh6CG299200 Rh6DG291100
rosa_wichuraiana	Rw6G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	409
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	2 cut(s)	134, 402
AcuI	CTGAAG	2 cut(s)	183, 735
AfiI	CCNNNNNNNGG	1 cut(s)	589
AgsI	TTSAA	3 cut(s)	184, 415, 482
AjuI	GAANNNNNNNTTGG	2 cut(s)	727, 759
AleI	CACNNNNGTG	1 cut(s)	89
Alw26I	GTCTC	4 cut(s)	199, 269, 276, 888
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	2 cut(s)	674, 758
AoxI	GGCC	2 cut(s)	580, 795
ApeKI	GCWGC	4 cut(s)	362, 436, 603, 818
ApoI	RAATTY	2 cut(s)	134, 402
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspS9I	GGNCC	1 cut(s)	858
AsuHPI	GGTGA	3 cut(s)	217, 251, 674
AvaII	GGWCC	1 cut(s)	858
BalI	TGGCCA	1 cut(s)	797
BbsI	GAAGAC	1 cut(s)	794
BbvI	GCAGC	4 cut(s)	374, 423, 615, 830
BccI	CCATC	3 cut(s)	28, 334, 780
BclI	TGATCA	1 cut(s)	864
BcoDI	GTCTC	4 cut(s)	199, 269, 276, 888
BfaI	CTAG	5 cut(s)	80, 191, 366, 462, 471
BfmI	CTRYAG	2 cut(s)	709, 759
BfuAI	ACCTGC	1 cut(s)	409
BisI	GCNGC	4 cut(s)	363, 437, 604, 819
BlsI	GCNGC	4 cut(s)	364, 438, 605, 820
Bme18I	GGWCC	1 cut(s)	858
BmgT120I	GGNCC	1 cut(s)	858
BmrI	ACTGGG	2 cut(s)	159, 561
BmsI	GCATC	1 cut(s)	655
BmuI	ACTGGG	2 cut(s)	159, 561
BpiI	GAAGAC	1 cut(s)	794
BplI	GAGNNNNNCTC	4 cut(s)	270, 302, 360, 392
BpmI	CTGGAG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	851
BsaI	GGTCTC	2 cut(s)	269, 276
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	5 cut(s)	154, 271, 516, 556, 583
Bse8I	GATNNNNATC	1 cut(s)	851
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	20, 101
BseJI	GATNNNNATC	1 cut(s)	851
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	5 cut(s)	154, 271, 516, 556, 583
BseRI	GAGGAG	3 cut(s)	25, 64, 294
BseXI	GCAGC	4 cut(s)	374, 423, 615, 830
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	582, 797
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	3 cut(s)	506, 716, 769
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	4 cut(s)	199, 269, 276, 888
BsmFI	GGGAC	3 cut(s)	506, 716, 769
BsnI	GGCC	2 cut(s)	582, 797
Bso31I	GGTCTC	2 cut(s)	269, 276
Bsp143I	GATC	2 cut(s)	522, 864
BspANI	GGCC	2 cut(s)	582, 797
BspCNI	CTCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	530
BspTNI	GGTCTC	2 cut(s)	269, 276
BsrI	ACTGG	5 cut(s)	154, 271, 516, 556, 583
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	522, 864
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	760, 793
Bst6I	CTCTTC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	20, 101
BstKTI	GATC	2 cut(s)	525, 867
BstMAI	GTCTC	4 cut(s)	199, 269, 276, 888
BstMBI	GATC	2 cut(s)	522, 864
BstMWI	GCNNNNNNNGC	1 cut(s)	705
BstSFI	CTRYAG	2 cut(s)	709, 759
BstV1I	GCAGC	4 cut(s)	374, 423, 615, 830
BstV2I	GAAGAC	1 cut(s)	794
BstXI	CCANNNNNNTGG	3 cut(s)	91, 380, 805
BsuRI	GGCC	2 cut(s)	582, 797
BtsCI	GGATG	2 cut(s)	20, 101
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	5 cut(s)	278, 385, 590, 613, 798
BveI	ACCTGC	1 cut(s)	409
CaiI	CAGNNNCTG	2 cut(s)	674, 758
Cfr13I	GGNCC	1 cut(s)	858
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	2 cut(s)	524, 866
DpnII	GATC	2 cut(s)	522, 864
DrdI	GACNNNNNNGTC	1 cut(s)	763
DseDI	GACNNNNNNGTC	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	795
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	269, 276
Eco47I	GGWCC	1 cut(s)	858
Eco57I	CTGAAG	2 cut(s)	183, 735
EcoO109I	RGGNCCY	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	3 cut(s)	506, 716, 769
FbaI	TGATCA	1 cut(s)	864
Fnu4HI	GCNGC	4 cut(s)	363, 437, 604, 819
FokI	GGATG	2 cut(s)	7, 88
Fsp4HI	GCNGC	4 cut(s)	363, 437, 604, 819
FspBI	CTAG	5 cut(s)	80, 191, 366, 462, 471
GluI	GCNGC	4 cut(s)	363, 437, 604, 819
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	582, 797
HapII	CCGG	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	5 cut(s)	143, 242, 369, 494, 563
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	3 cut(s)	217, 251, 674
Hpy166II	GTNNAC	2 cut(s)	94, 112
Hpy188I	TCNGA	2 cut(s)	640, 655
Hpy188III	TCNNGA	3 cut(s)	482, 526, 868
Hpy8I	GTNNAC	2 cut(s)	94, 112
HpyAV	CCTTC	2 cut(s)	79, 229
HpyCH4III	ACNGT	2 cut(s)	760, 793
HpyCH4V	TGCA	5 cut(s)	254, 276, 453, 668, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	705
HpyF3I	CTNAG	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	864
Kzo9I	GATC	2 cut(s)	522, 864
LmnI	GCTCC	2 cut(s)	308, 555
Lsp1109I	GCAGC	4 cut(s)	374, 423, 615, 830
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	5 cut(s)	80, 191, 366, 462, 471
MaeIII	GTNAC	2 cut(s)	239, 313
MalI	GATC	2 cut(s)	524, 866
MboI	GATC	2 cut(s)	522, 864
MboII	GAAGA	5 cut(s)	189, 214, 738, 741, 799
MlsI	TGGCCA	1 cut(s)	797
MluCI	AATT	2 cut(s)	134, 402
MluNI	TGGCCA	1 cut(s)	797
MlyI	GAGTC	5 cut(s)	137, 236, 378, 488, 572
Mox20I	TGGCCA	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	797
MseI	TTAA	2 cut(s)	332, 740
MslI	CAYNNNNRTG	2 cut(s)	89, 803
Msp20I	TGGCCA	1 cut(s)	797
MspA1I	CMGCKG	4 cut(s)	89, 296, 436, 821
MspI	CCGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	705
NdeII	GATC	2 cut(s)	522, 864
NmuCI	GTSAC	2 cut(s)	239, 313
OliI	CACNNNNGTG	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	364, 438, 605, 820
PleI	GAGTC	5 cut(s)	137, 236, 377, 488, 571
PpsI	GAGTC	5 cut(s)	137, 236, 377, 488, 571
PpuMI	RGGWCCY	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	858
PspFI	CCCAGC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	858
PspPPI	RGGWCCY	1 cut(s)	858
PstNI	CAGNNNCTG	2 cut(s)	674, 758
PvuII	CAGCTG	4 cut(s)	89, 296, 436, 821
RseI	CAYNNNNRTG	2 cut(s)	89, 803
SaqAI	TTAA	2 cut(s)	332, 740
SatI	GCNGC	4 cut(s)	363, 437, 604, 819
Sau3AI	GATC	2 cut(s)	522, 864
Sau96I	GGNCC	1 cut(s)	858
SchI	GAGTC	5 cut(s)	137, 236, 378, 488, 572
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	709, 759
SinI	GGWCC	1 cut(s)	858
SmiMI	CAYNNNNRTG	2 cut(s)	89, 803
Sse9I	AATT	2 cut(s)	134, 402
SspMI	CTAG	5 cut(s)	80, 191, 366, 462, 471
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	760, 793
TasI	AATT	2 cut(s)	134, 402
Tru1I	TTAA	2 cut(s)	332, 740
Tru9I	TTAA	2 cut(s)	332, 740
TscAI	CASTG	5 cut(s)	278, 385, 590, 613, 798
TseFI	GTSAC	2 cut(s)	239, 313
TseI	GCWGC	4 cut(s)	362, 436, 603, 818
Tsp45I	GTSAC	2 cut(s)	239, 313
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	5 cut(s)	278, 385, 590, 613, 798
VpaK11BI	GGWCC	1 cut(s)	858
XapI	RAATTY	2 cut(s)	134, 402
XcmI	CCANNNNNNNNNTGG	2 cut(s)	146, 344
XspI	CTAG	5 cut(s)	80, 191, 366, 462, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.