Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0014587

Physical Location & Seq

Genomic Coordinates Reverse (-)

11207574 .. 11209512

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1060400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTTTTTCACACTTCCAATCTCTCTCCTTCCATTTTCTCTGCTCTGTTTTTCTTCACCCTCCTCGCCTCCTTTCCATTTTCCACCATTTCTACTGATCTCACAAACTTGATCTACAAAGGCTGTGCAAACCAAAACTTCCAAGACCCAAATGGAACTTACAAAAAAAACCTCAAATCTTTGTTCGATTCTCTGGTCTCCCAATCGTCGCAAAAGACTTACTTTTCCACCACCTTTGGCGACGGCCAAACCGCAATCGTGGGGACGTACCAATGCAGGGGAGACCTCAGCACATCCGATTGCAACCTCTGCGTGAAAAAGATTCCAGCTTTGGCCAATAAACTATGTGGGGAGGTAGTAGCAGCCAGAGTCCAGCTGGATGGGTGTTACCTGAGGTATGAGGTTGCTGGGTTTCAACAGGTTCCAGGGACACAGTTTTTGTTTAAAATTTGTAGGAAAAATCAGGCAAGTGGGGTGAGTGCTGGGTTTGCAGACAAGAGGGACAAGGCTTTTGGGATGGTGGAAAATGGGGTGAAAAATGGGAGTGCTGGGTTTTATACTGGAACTTATCAGTCTCTGTATATTTTGGGGCAGTGCGAGGGGGATCTGGGAAGTGGGGATTGTGGGGATTGTGTGAAAATTGCTGATCAGAGAGCTAAAAGTGACTGCAACGGTTCATTTTCTGGGCAGATTTATCTTCAGAAGTGCTACATCAGCTACAACTTTTACCCCAATGGTGTGACAAGCATAACTTCTTCATCAGGGTCTAGGCACCATACACAGAGGACAGTGGCAATTGCAGTGGGAGGGTTGGCAGCTTTTGGGTTTCTAGTTGTTTGTTTGATGTTTGTTAAGCAACTCATGAAGAAGAAACATGGTGGGAAGCATGGAGATTACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

301

Amino Acids

32.55

Weight (kDa)

8.95

Isoelectric Point (pI)

18.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	42 - 134	4.2e-19	Salt stress response/antifungal
Stress-antifung	PF01657	159 - 241	5.5e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43980
fragaria_vesca	FvH4_2g20590 FvH4_2g20590
malus_domestica	MD00G1060400.v1.1
prunus_persica	Prupe.8G216200_v2.0.a1
pyrus_communis	pycom10g15290
rosa_chinensis	RchiOBHm_Chr6g0286761
rosa_laevigata	RLG00000012544
rosa_multiflora	Rmu_sc0007546.1_g000011 Rmu_sc0036247.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182030
rosa_rugosa	Rorug06G0182800
rosa_samantha	Rh6AG295300 Rh6BG299300 Rh6CG299200 Rh6DG291100
rosa_wichuraiana	Rw6G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	771
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	612
AcoI	YGGCCR	2 cut(s)	244, 333
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	683
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	5 cut(s)	329, 376, 656, 717, 818
AluI	AGCT	5 cut(s)	329, 376, 656, 717, 818
Alw26I	GTCTC	3 cut(s)	202, 276, 579
AlwI	GGATC	1 cut(s)	612
AlwNI	CAGNNNCTG	1 cut(s)	577
AoxI	GGCC	2 cut(s)	244, 333
ApeKI	GCWGC	2 cut(s)	362, 815
ApoI	RAATTY	1 cut(s)	447
ArsI	GACNNNNNNTTYG	4 cut(s)	421, 453, 494, 526
AsuHPI	GGTGA	3 cut(s)	49, 487, 544
AxyI	CCTNAGG	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	771
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	374, 827
BccI	CCATC	2 cut(s)	374, 511
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	3 cut(s)	202, 276, 579
BfaI	CTAG	2 cut(s)	768, 830
BisI	GCNGC	2 cut(s)	363, 816
BlsI	GCNGC	2 cut(s)	364, 817
Bme1390I	CCNGG	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	423, 773
BmrFI	CCNGG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	287
BsaI	GGTCTC	2 cut(s)	202, 276
BsaJI	CCNNGG	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	565
Bse21I	CCTNAGG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	3 cut(s)	293, 385, 522
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	301, 383
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	374, 827
BseYI	CCCAGC	3 cut(s)	407, 482, 548
BshFI	GGCC	2 cut(s)	246, 335
BshNI	GGYRCC	1 cut(s)	771
BslFI	GGGAC	3 cut(s)	277, 442, 515
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	3 cut(s)	202, 276, 579
BsmFI	GGGAC	3 cut(s)	277, 442, 515
BsnI	GGCC	2 cut(s)	246, 335
Bso31I	GGTCTC	2 cut(s)	202, 276
Bsp143I	GATC	4 cut(s)	97, 111, 604, 646
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	246, 335
BspCNI	CTCAG	2 cut(s)	300, 384
BspHI	TCATGA	1 cut(s)	861
BspLI	GGNNCC	2 cut(s)	423, 773
BspPI	GGATC	1 cut(s)	612
BspT107I	GGYRCC	1 cut(s)	771
BspTNI	GGTCTC	2 cut(s)	202, 276
BsrI	ACTGG	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	4 cut(s)	97, 111, 604, 646
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	435, 674, 790
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	287, 392
BstF5I	GGATG	3 cut(s)	293, 385, 522
BstKTI	GATC	4 cut(s)	100, 114, 607, 649
BstMAI	GTCTC	3 cut(s)	202, 276, 579
BstMBI	GATC	4 cut(s)	97, 111, 604, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 488, 714
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	374, 827
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	604
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	246, 335
BtsCI	GGATG	3 cut(s)	293, 385, 522
BtsI	GCAGTG	2 cut(s)	599, 807
BtsIMutI	CAGTG	3 cut(s)	599, 795, 807
CaiI	CAGNNNCTG	1 cut(s)	577
CciI	TCATGA	1 cut(s)	861
Csp6I	GTAC	1 cut(s)	268
CspCI	CAANNNNNGTGG	4 cut(s)	217, 252, 783, 818
CviAII	CATG	3 cut(s)	862, 875, 887
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	287, 392
DpnI	GATC	4 cut(s)	99, 113, 606, 648
DpnII	GATC	4 cut(s)	97, 111, 604, 646
DraI	TTTAAA	1 cut(s)	445
EaeI	YGGCCR	2 cut(s)	244, 333
Eco31I	GGTCTC	2 cut(s)	202, 276
Eco57I	CTGAAG	1 cut(s)	683
Eco81I	CCTNAGG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	424
FaeI	CATG	3 cut(s)	865, 878, 890
FaiI	YATR	9 cut(s)	346, 399, 558, 582, 749, 777, 863, 876, 888
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 736, 768
FaqI	GGGAC	3 cut(s)	277, 442, 515
FatI	CATG	3 cut(s)	861, 874, 886
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	363, 816
FokI	GGATG	3 cut(s)	280, 392, 529
Fsp4HI	GCNGC	2 cut(s)	363, 816
FspBI	CTAG	2 cut(s)	768, 830
GluI	GCNGC	2 cut(s)	363, 816
GsaI	CCCAGC	3 cut(s)	411, 486, 552
HaeIII	GGCC	2 cut(s)	246, 335
Hin1II	CATG	3 cut(s)	865, 878, 890
HinfI	GANTC	3 cut(s)	188, 322, 369
HphI	GGTGA	3 cut(s)	49, 487, 544
Hpy188I	TCNGA	3 cut(s)	298, 651, 702
Hpy188III	TCNNGA	1 cut(s)	862
Hpy99I	CGWCG	2 cut(s)	211, 245
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	3 cut(s)	435, 674, 790
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	6 cut(s)	128, 276, 303, 491, 669, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 488, 714
HpyF3I	CTNAG	2 cut(s)	287, 392
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	865, 878, 890
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	97, 111, 604, 646
Lsp1109I	GCAGC	2 cut(s)	374, 827
MaeI	CTAG	2 cut(s)	768, 830
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	3 cut(s)	386, 662, 739
MalI	GATC	4 cut(s)	99, 113, 606, 648
MboI	GATC	4 cut(s)	97, 111, 604, 646
MboII	GAAGA	5 cut(s)	46, 689, 747, 877, 880
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	1 cut(s)	604
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	3 cut(s)	447, 639, 795
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	378
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	444, 852
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	3 cut(s)	309, 488, 714
NdeII	GATC	4 cut(s)	97, 111, 604, 646
NlaIII	CATG	3 cut(s)	865, 878, 890
NlaIV	GGNNCC	2 cut(s)	423, 773
NmuCI	GTSAC	2 cut(s)	662, 739
PagI	TCATGA	1 cut(s)	861
PfeI	GAWTC	2 cut(s)	188, 322
PkrI	GCNGC	2 cut(s)	364, 817
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	424
PspFI	CCCAGC	3 cut(s)	407, 482, 548
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	423, 773
PstNI	CAGNNNCTG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	444, 852
SatI	GCNGC	2 cut(s)	363, 816
Sau3AI	GATC	4 cut(s)	97, 111, 604, 646
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	426
Sse9I	AATT	3 cut(s)	447, 639, 795
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	768, 830
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	3 cut(s)	435, 674, 790
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	447, 639, 795
TfiI	GAWTC	2 cut(s)	188, 322
Tru1I	TTAA	2 cut(s)	444, 852
Tru9I	TTAA	2 cut(s)	444, 852
TscAI	CASTG	3 cut(s)	599, 795, 807
TseFI	GTSAC	2 cut(s)	662, 739
TseI	GCWGC	2 cut(s)	362, 815
Tsp45I	GTSAC	2 cut(s)	662, 739
TspDTI	ATGAA	3 cut(s)	666, 747, 878
TspRI	CASTG	3 cut(s)	599, 795, 807
XapI	RAATTY	1 cut(s)	447
XcmI	CCANNNNNNNNNTGG	2 cut(s)	149, 373
XspI	CTAG	2 cut(s)	768, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.