Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036247.1

Orthogroup ID

OG0014587

Physical Location & Seq

Genomic Coordinates Reverse (-)

3656 .. 4557

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036247.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ctgctgtacaagatttgcgggtcgagtcggtctagtgggtctgctgagtttgaacagaaaagggactctgcttttgacaaattggaaggtgggatcaagaatggtagtgtgttgttctatactgggagctatgagtcggtttatgttttgggccagtgtgagggtgatttgagcaacagtgattgtggggattgtgtcaaaagtgctactgaacaagccgattccgagtgtggtgattcagtttctgggcagatttatctgcacaagtgctatatcagctacagctactatgctaatggcgtcccaaccttaacttcctcatcagggactgtagggtctaaccatcacacaacacagaagacagtggccattgttgtgggaggtgtagcagctgtggggtttgtatttgtatgcttgatgtttatcaagtctctgttaaagaagaagcgtggtgccaaacatggagactactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

158

Amino Acids

16.88

Weight (kDa)

7.03

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43980
fragaria_vesca	FvH4_2g20590 FvH4_2g20590
malus_domestica	MD00G1060400.v1.1
prunus_persica	Prupe.8G216200_v2.0.a1
pyrus_communis	pycom10g15290
rosa_chinensis	RchiOBHm_Chr6g0286761
rosa_laevigata	RLG00000012544
rosa_multiflora	Rmu_sc0007546.1_g000011 Rmu_sc0036247.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182030
rosa_rugosa	Rorug06G0182800
rosa_samantha	Rh6AG295300 Rh6BG299300 Rh6CG299200 Rh6DG291100
rosa_wichuraiana	Rw6G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	452
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	160, 324
AgsI	TTSAA	1 cut(s)	53
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	4 cut(s)	129, 279, 285, 392
AluI	AGCT	4 cut(s)	129, 279, 285, 392
Alw26I	GTCTC	2 cut(s)	435, 459
AlwI	GGATC	1 cut(s)	101
AlwNI	CAGNNNCTG	2 cut(s)	245, 329
AoxI	GGCC	2 cut(s)	151, 366
ApeKI	GCWGC	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	176, 245
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	435, 459
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	2 cut(s)	280, 330
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 324
Bse1I	ACTGG	2 cut(s)	127, 154
Bse8I	GATNNNNATC	1 cut(s)	422
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	2 cut(s)	160, 324
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	127, 154
BseXI	GCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	153, 368
BshNI	GGYRCC	1 cut(s)	452
BslFI	GGGAC	3 cut(s)	77, 287, 340
BslI	CCNNNNNNNGG	2 cut(s)	160, 324
BsmAI	GTCTC	2 cut(s)	435, 459
BsmFI	GGGAC	3 cut(s)	77, 287, 340
BsnI	GGCC	2 cut(s)	153, 368
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	153, 368
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	127, 154
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	179, 331, 364
BstACI	GRCGYC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	2 cut(s)	435, 459
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSFI	CTRYAG	2 cut(s)	280, 330
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	153, 368
BtsIMutI	CAGTG	3 cut(s)	161, 184, 369
CaiI	CAGNNNCTG	2 cut(s)	245, 329
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	461
CviJI	RGCY	7 cut(s)	129, 153, 218, 279, 285, 368, 392
CviKI_1	RGCY	7 cut(s)	129, 153, 218, 279, 285, 368, 392
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	334
DseDI	GACNNNNNNGTC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	366
FaeI	CATG	1 cut(s)	464
FaiI	YATR	7 cut(s)	120, 132, 144, 273, 291, 412, 462
FaqI	GGGAC	3 cut(s)	77, 287, 340
FatI	CATG	1 cut(s)	460
FauI	CCCGC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	153, 368
HgaI	GACGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	464
HinfI	GANTC	5 cut(s)	25, 65, 134, 221, 236
HphI	GGTGA	2 cut(s)	176, 245
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	179, 331, 364
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	464
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	4 cut(s)	108, 167, 231, 309
Lsp1109I	GCAGC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	33
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	370, 454
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	3 cut(s)	34, 59, 143
MnlI	CCTC	3 cut(s)	154, 328, 374
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	2 cut(s)	311, 437
MslI	CAYNNNNRTG	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	221, 236
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	3 cut(s)	33, 59, 142
PpsI	GAGTC	3 cut(s)	33, 59, 142
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	151
PstNI	CAGNNNCTG	2 cut(s)	245, 329
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	311, 437
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	3 cut(s)	34, 59, 143
SetI	ASST	7 cut(s)	91, 131, 281, 287, 311, 385, 394
SfcI	CTRYAG	2 cut(s)	280, 330
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	179, 331, 364
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	18
TasI	AATT	1 cut(s)	80
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	221, 236
Tru1I	TTAA	2 cut(s)	311, 437
Tru9I	TTAA	2 cut(s)	311, 437
TscAI	CASTG	3 cut(s)	161, 184, 369
TseI	GCWGC	1 cut(s)	389
TspRI	CASTG	3 cut(s)	161, 184, 369
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.