Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006706

Physical Location & Seq

Genomic Coordinates Forward (+)

19329544 .. 19331477

Gene Structure 1934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGCGAGCCACTAGGACTGCTCCAGGTGACTGTTATTCAAGGAAAGAAACTGGTGATCCGAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGTCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCTCTCTCAGCCTTCAACCGCTTATCTCAGTTGCCAGACTAAGACACGTAGTCCGCGTGTCCTCTGGTGAGACAACGCTTAGGAAAGTATTACCGGATCCAGAGAACTGCGTATCTCGAGAGAGCACAATCAGTTGCATAGACGGAGAGGTGGTGCAGAGTGTGTGGCTGAGGCTGTGTGCTGTTGAATCGGGTGAGATTGAGTTGAAGATAAAGTTGATTGATCCTCCTGGAACAAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0007275 GO:0008047 GO:0008150 GO:0008289 GO:0009555 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

18.34

Weight (kDa)

6.74

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 98	4.4e-26	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47710 AT5G47710 AT5G47710 AT5G47710
fragaria_vesca	FvH4_3g00301 FvH4_3g00301 FvH4_3g00301
malus_domestica	MD05G1361900.v1.1 MD10G1339400.v1.1
prunus_persica	Prupe.4G003500_v2.0.a1 Prupe.4G003500_v2.0.a1
pyrus_communis	pycom05g32840
rosa_chinensis	RchiOBHm_Chr5g0000471
rosa_laevigata	RLG00000030870
rosa_multiflora	Rmu_sc0003949.1_g000007
rosa_rugosa	Rorug04G0383900 Rorug04G0384000 Rorug04G0384100 Rorug04G0384200 Rorug04G0384200 Rorug04G0384200
rosa_samantha	Rh5AG003900 Rh5BG005100 Rh5CG004200 Rh5DG004100
rosa_wichuraiana	Rw5G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	312
AciI	CCGC	2 cut(s)	275, 310
AclWI	GGATC	6 cut(s)	52, 74, 179, 347, 360, 473
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	6 cut(s)	41, 70, 232, 272, 443, 463
AhdI	GACNNNNNGTC	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	24, 484
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	6 cut(s)	52, 74, 179, 347, 360, 473
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	4 cut(s)	40, 67, 335, 461
AvaI	CYCGRG	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	383
BbvCI	CCTCAGC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	26, 486
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	26, 486
BmeRI	GACNNNNNGTC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	26, 486
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	8
Bpu10I	CCTNAGC	2 cut(s)	335, 425
BsaAI	YACGTR	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bse1I	ACTGG	2 cut(s)	57, 149
BseBI	CCWGG	2 cut(s)	26, 486
BseMII	CTCAG	3 cut(s)	277, 297, 416
BseNI	ACTGG	2 cut(s)	57, 149
BseXI	GCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	383
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	6 cut(s)	57, 79, 129, 184, 352, 478
BspACI	CCGC	2 cut(s)	275, 310
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	3 cut(s)	276, 296, 417
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	6 cut(s)	52, 74, 179, 347, 360, 473
BsrI	ACTGG	2 cut(s)	57, 149
BssMI	GATC	6 cut(s)	57, 79, 129, 184, 352, 478
Bst2UI	CCWGG	2 cut(s)	26, 486
Bst4CI	ACNGT	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	5 cut(s)	263, 283, 296, 335, 425
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	6 cut(s)	60, 82, 132, 187, 355, 481
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	6 cut(s)	57, 79, 129, 184, 352, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	2 cut(s)	26, 486
BstSCI	CCNGG	2 cut(s)	24, 484
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	2 cut(s)	184, 352
BstYI	RGATCY	2 cut(s)	184, 352
BsuRI	GGCC	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	250
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	5 cut(s)	10, 252, 267, 424, 430
CviKI_1	RGCY	5 cut(s)	10, 252, 267, 424, 430
DdeI	CTNAG	5 cut(s)	263, 283, 296, 335, 425
DpnI	GATC	6 cut(s)	59, 81, 131, 186, 354, 480
DpnII	GATC	6 cut(s)	57, 79, 129, 184, 352, 478
DriI	GACNNNNNGTC	1 cut(s)	305
Eam1105I	GACNNNNNGTC	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	24, 484
FaeI	CATG	1 cut(s)	257
FaiI	YATR	3 cut(s)	87, 255, 395
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	1 cut(s)	257
HinfI	GANTC	3 cut(s)	110, 145, 443
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	4 cut(s)	40, 67, 335, 461
Hpy188I	TCNGA	2 cut(s)	62, 180
Hpy188III	TCNNGA	3 cut(s)	356, 372, 374
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	191, 393, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	5 cut(s)	263, 283, 296, 335, 425
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	57, 79, 129, 184, 352, 478
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	6 cut(s)	59, 81, 131, 186, 354, 480
MboI	GATC	6 cut(s)	57, 79, 129, 184, 352, 478
MboII	GAAGA	2 cut(s)	130, 475
MfeI	CAATTG	1 cut(s)	136
MflI	RGATCY	2 cut(s)	184, 352
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	2 cut(s)	98, 136
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	154, 268, 328, 397, 420, 492
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	26, 486
MunI	CAATTG	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	26, 486
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	6 cut(s)	57, 79, 129, 184, 352, 478
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	28
PaeR7I	CTCGAG	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	145, 443
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	24, 484
PspGI	CCWGG	2 cut(s)	24, 484
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	2 cut(s)	184, 352
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	6 cut(s)	57, 79, 129, 184, 352, 478
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	26, 486
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	4 cut(s)	30, 230, 306, 408
SfcI	CTRYAG	1 cut(s)	189
Sfr274I	CTCGAG	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	2 cut(s)	98, 136
SsiI	CCGC	2 cut(s)	275, 310
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	24, 484
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	373
TasI	AATT	2 cut(s)	98, 136
TfiI	GAWTC	2 cut(s)	145, 443
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	156
XhoI	CTCGAG	1 cut(s)	372
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.