Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006706

Physical Location & Seq

Genomic Coordinates Reverse (-)

172724 .. 175564

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00301.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTGTTTCGTTTCTCTACTTCCTTGTTGTCATTACTAGCTAGCAATTCCAGTTTCTCAGAAGAACATACCTACTTTGTTTTTTTTGTTGTTTTCTTCAAACACCGCAAACCTTCCGTCTTCTCTTCCTTGAATCTTAAGCTCCGCAAGTGGAGGCTGTTTTCATATGCAAGTATGGGAGATCCATTGGGTTTGCTTAAAGTAACAGTTGTGCAAGGAAGAAGACTGGTAATTCGGGACTTCAAGAGTAGCGATCCTTATGTTGTTGTCAAGTTGGGCAATCAGATGGCAAAAACCAAGGTTATCAACAGCTGCCTTAATCCTGTTTGGAATGAAGAGTTAACCTTCAATCCAACAGAGCCCATCGGAGTTCTAAATCTGGAAGTGTTTGATAAAGATTTTCTCAAGACAGATGATAAGATGGGACATGCTCACCTGAGCCTTCAGCCAATAGTCTCAGCTGCTAGATTGGGGCAGATCTTACGAGCTTCTTCTTCTGGCGAGACAACATTAAGGAAGGTTGTCCCAGATAGTGACAACTGCCTAGTCAGAGACAGCACCATAACTGGTGTGGATGGGGGGGTGGTGCAGAGTGTTTGGCTGAGGCTTTGTGATGTCGAGTCTGGGGAGTTGGAATTGAAAATCAAGTTATCTGGTGTGCCGGTTGCTCCCTCACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0007275 GO:0008047 GO:0008150 GO:0008289 GO:0009555 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

227

Amino Acids

25.22

Weight (kDa)

9.3

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 97	1.4e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47710 AT5G47710 AT5G47710 AT5G47710
fragaria_vesca	FvH4_3g00301 FvH4_3g00301 FvH4_3g00301
malus_domestica	MD05G1361900.v1.1 MD10G1339400.v1.1
prunus_persica	Prupe.4G003500_v2.0.a1 Prupe.4G003500_v2.0.a1
pyrus_communis	pycom05g32840
rosa_chinensis	RchiOBHm_Chr5g0000471
rosa_laevigata	RLG00000030870
rosa_multiflora	Rmu_sc0003949.1_g000007
rosa_rugosa	Rorug04G0383900 Rorug04G0384000 Rorug04G0384100 Rorug04G0384200 Rorug04G0384200 Rorug04G0384200
rosa_samantha	Rh5AG003900 Rh5BG005100 Rh5CG004200 Rh5DG004100
rosa_wichuraiana	Rw5G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	106, 145
AclWI	GGATC	2 cut(s)	176, 248
AcuI	CTGAAG	1 cut(s)	428
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	100, 133, 244, 349, 640
AluBI	AGCT	5 cut(s)	41, 142, 312, 461, 488
AluI	AGCT	5 cut(s)	41, 142, 312, 461, 488
Alw26I	GTCTC	3 cut(s)	460, 497, 546
AlwI	GGATC	2 cut(s)	176, 248
ApeKI	GCWGC	2 cut(s)	312, 461
ArsI	GACNNNNNNTTYG	4 cut(s)	102, 134, 216, 248
AsuHPI	GGTGA	1 cut(s)	425
AsuNHI	GCTAGC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	112, 229
BbvCI	CCTCAGC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	299, 448
BccI	CCATC	4 cut(s)	280, 371, 415, 569
BcoDI	GTCTC	3 cut(s)	460, 497, 546
BfaI	CTAG	4 cut(s)	38, 42, 465, 545
BfrI	CTTAAG	1 cut(s)	137
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	2 cut(s)	313, 462
BlsI	GCNGC	2 cut(s)	314, 463
BmtI	GCTAGC	1 cut(s)	45
BpiI	GAAGAC	2 cut(s)	112, 229
Bpu10I	CCTNAGC	2 cut(s)	437, 602
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	661
Bse1I	ACTGG	3 cut(s)	51, 231, 571
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	580
BseMII	CTCAG	4 cut(s)	72, 428, 471, 593
BseNI	ACTGG	3 cut(s)	51, 231, 571
BseXI	GCAGC	2 cut(s)	299, 448
BsgI	GTGCAG	1 cut(s)	608
BsiSI	CCGG	1 cut(s)	662
BslFI	GGGAC	3 cut(s)	251, 438, 509
BsmAI	GTCTC	3 cut(s)	460, 497, 546
BsmFI	GGGAC	3 cut(s)	251, 438, 509
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	181, 253, 477
BspACI	CCGC	2 cut(s)	106, 145
BspCNI	CTCAG	4 cut(s)	71, 429, 470, 594
BspOI	GCTAGC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	176, 248
BspTI	CTTAAG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	661
BsrI	ACTGG	3 cut(s)	51, 231, 571
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	181, 253, 477
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	208, 678
Bst6I	CTCTTC	2 cut(s)	130, 330
BstAFI	CTTAAG	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	4 cut(s)	58, 437, 457, 602
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	3 cut(s)	184, 256, 480
BstMAI	GTCTC	3 cut(s)	460, 497, 546
BstMBI	GATC	3 cut(s)	181, 253, 477
BstNSI	RCATGY	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	299, 448
BstV2I	GAAGAC	2 cut(s)	112, 229
BstX2I	RGATCY	2 cut(s)	181, 477
BstYI	RGATCY	2 cut(s)	181, 477
BtsCI	GGATG	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	661
CviAII	CATG	1 cut(s)	428
DdeI	CTNAG	4 cut(s)	58, 437, 457, 602
DpnI	GATC	3 cut(s)	183, 255, 479
DpnII	GATC	3 cut(s)	181, 253, 477
Eam1104I	CTCTTC	2 cut(s)	130, 330
EarI	CTCTTC	2 cut(s)	130, 330
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	1 cut(s)	431
FaiI	YATR	7 cut(s)	69, 166, 168, 176, 261, 429, 563
FaqI	GGGAC	3 cut(s)	251, 438, 509
FatI	CATG	1 cut(s)	427
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	313, 462
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	313, 462
FspBI	CTAG	4 cut(s)	38, 42, 465, 545
GluI	GCNGC	2 cut(s)	313, 462
HapII	CCGG	1 cut(s)	662
Hin1II	CATG	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	2 cut(s)	133, 620
HpaI	GTTAAC	1 cut(s)	342
HpaII	CCGG	1 cut(s)	662
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	4 cut(s)	61, 285, 368, 551
Hpy188III	TCNNGA	4 cut(s)	236, 244, 380, 406
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	4 cut(s)	123, 355, 452, 511
HpyCH4III	ACNGT	2 cut(s)	208, 678
HpyCH4V	TGCA	3 cut(s)	170, 214, 589
HpyF3I	CTNAG	4 cut(s)	58, 437, 457, 602
Hsp92II	CATG	1 cut(s)	431
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	181, 253, 477
LmnI	GCTCC	2 cut(s)	147, 673
Lsp1109I	GCAGC	2 cut(s)	299, 448
MaeI	CTAG	4 cut(s)	38, 42, 465, 545
MaeIII	GTNAC	2 cut(s)	202, 533
MalI	GATC	3 cut(s)	183, 255, 479
MboI	GATC	3 cut(s)	181, 253, 477
MboII	GAAGA	9 cut(s)	74, 88, 112, 117, 231, 234, 347, 483, 486
MflI	RGATCY	2 cut(s)	181, 477
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	46, 231, 635
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	2 cut(s)	377, 612
MnlI	CCTC	2 cut(s)	147, 597
MseI	TTAA	5 cut(s)	138, 198, 318, 341, 512
MspA1I	CMGCKG	2 cut(s)	312, 461
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	1 cut(s)	662
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	3 cut(s)	181, 253, 477
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	314, 463
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	181, 477
PvuII	CAGCTG	2 cut(s)	312, 461
SaqAI	TTAA	5 cut(s)	138, 198, 318, 341, 512
SatI	GCNGC	2 cut(s)	313, 462
Sau3AI	GATC	3 cut(s)	181, 253, 477
SchI	GAGTC	1 cut(s)	629
SduI	GDGCHC	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	137, 404
SmoI	CTYRAG	2 cut(s)	137, 404
Sse9I	AATT	3 cut(s)	46, 231, 635
SsiI	CCGC	2 cut(s)	106, 145
SspMI	CTAG	4 cut(s)	38, 42, 465, 545
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	208, 678
TaqI	TCGA	1 cut(s)	618
TasI	AATT	3 cut(s)	46, 231, 635
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	5 cut(s)	138, 198, 318, 341, 512
Tru9I	TTAA	5 cut(s)	138, 198, 318, 341, 512
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	2 cut(s)	312, 461
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	2 cut(s)	153, 348
TspGWI	ACGGA	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	137
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XspI	CTAG	4 cut(s)	38, 42, 465, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.