Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006706

Physical Location & Seq

Genomic Coordinates Forward (+)

41514566 .. 41517569

Gene Structure 3004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1339400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAGATTCATTGGGTTTGATAAAAGTTACAGTCGTGCAAGGGAAAAGACTGGTCGTCCGGGATTTCACGAGCAGCGACCCTTATGTTGTTGTCAAGTTGGGCAATCAGGTGGCAAAAACCAAGGTTATCAACAGTTGCCTCAATCCAGTTTGGAATGAAGAGCTAAGCTTCTTCCTTAAGGAGCCTATTGGAGATCTAAGTTTGGAAGTGTTCGACAAAGACTTTCTGAAGACGGATGATAAGATGGGACATGCTCACCTCAGCCTTCAGCCTATAGTCTCCGCTGCTAGATTGAGCCAGATTTTGCGTGTTTCTTCAGGTGAGACAACATTAAGGAAGGTTGTCCCAGACGGTGAAAACTGCCTAGTTAAGGAAAGCTCCATCACAAGTGTAGACGGTGAGGTGGTGCAGAGTGTTTGGTTGAGGCTTTGTGATGTTGAGTCAGGGGAAATCGAACTGAAAATCAAGTTCCCTAATGCGCCGGTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0007275 GO:0008047 GO:0008150 GO:0008289 GO:0009555 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

165

Amino Acids

18.02

Weight (kDa)

5.44

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	7 - 101	2.2e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47710 AT5G47710 AT5G47710 AT5G47710
fragaria_vesca	FvH4_3g00301 FvH4_3g00301 FvH4_3g00301
malus_domestica	MD05G1361900.v1.1 MD10G1339400.v1.1
prunus_persica	Prupe.4G003500_v2.0.a1 Prupe.4G003500_v2.0.a1
pyrus_communis	pycom05g32840
rosa_chinensis	RchiOBHm_Chr5g0000471
rosa_laevigata	RLG00000030870
rosa_multiflora	Rmu_sc0003949.1_g000007
rosa_rugosa	Rorug04G0383900 Rorug04G0384000 Rorug04G0384100 Rorug04G0384200 Rorug04G0384200 Rorug04G0384200
rosa_samantha	Rh5AG003900 Rh5BG005100 Rh5CG004200 Rh5DG004100
rosa_wichuraiana	Rw5G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	1 cut(s)	285
AcuI	CTGAAG	3 cut(s)	251, 254, 303
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	1 cut(s)	179
AhdI	GACNNNNNGTC	1 cut(s)	56
AluBI	AGCT	3 cut(s)	166, 171, 381
AluI	AGCT	3 cut(s)	166, 171, 381
Alw26I	GTCTC	2 cut(s)	286, 320
ApeKI	GCWGC	2 cut(s)	75, 287
AspLEI	GCGC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	4 cut(s)	251, 335, 368, 413
BauI	CACGAG	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	87, 274
BccI	CCATC	2 cut(s)	241, 392
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	286, 320
BfaI	CTAG	2 cut(s)	291, 368
BfmI	CTRYAG	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	76, 288
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	2 cut(s)	77, 289
Bme1390I	CCNGG	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	57, 149
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	2 cut(s)	57, 149
BseXI	GCAGC	2 cut(s)	87, 274
BsgI	GTGCAG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	61, 485
BslFI	GGGAC	2 cut(s)	264, 332
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	2 cut(s)	286, 320
BsmFI	GGGAC	2 cut(s)	264, 332
Bsp143I	GATC	1 cut(s)	196
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	57, 149
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	70
Bst4CI	ACNGT	4 cut(s)	34, 137, 356, 401
Bst6I	CTCTTC	1 cut(s)	156
BstAFI	CTTAAG	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	167, 200, 263
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	286, 320
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	87, 274
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	244
CfoI	GCGC	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	484
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	8 cut(s)	166, 171, 187, 267, 274, 300, 381, 430
CviKI_1	RGCY	8 cut(s)	166, 171, 187, 267, 274, 300, 381, 430
DdeI	CTNAG	3 cut(s)	167, 200, 263
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DriI	GACNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	251, 254, 303
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	257
FaiI	YATR	3 cut(s)	87, 255, 278
FaqI	GGGAC	2 cut(s)	264, 332
FatI	CATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	2 cut(s)	76, 288
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	76, 288
FspBI	CTAG	2 cut(s)	291, 368
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	2 cut(s)	76, 288
HapII	CCGG	2 cut(s)	61, 485
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HindIII	AAGCTT	1 cut(s)	169
HinfI	GANTC	2 cut(s)	8, 443
HpaII	CCGG	2 cut(s)	61, 485
HphI	GGTGA	4 cut(s)	251, 335, 368, 413
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	278, 334
HpyCH4III	ACNGT	4 cut(s)	34, 137, 356, 401
HpyCH4V	TGCA	2 cut(s)	40, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	3 cut(s)	167, 200, 263
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	2 cut(s)	184, 386
LpnPI	CCDG	8 cut(s)	38, 74, 95, 162, 306, 314, 363, 432
Lsp1109I	GCAGC	2 cut(s)	87, 274
MaeI	CTAG	2 cut(s)	291, 368
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	166, 173, 244, 309
MflI	RGATCY	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	4 cut(s)	152, 272, 397, 420
MseI	TTAA	3 cut(s)	180, 335, 372
MspA1I	CMGCKG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	2 cut(s)	61, 485
MspR9I	CCNGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	186
NspI	RCATGY	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	77, 289
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	180, 335, 372
SatI	GCNGC	2 cut(s)	76, 288
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	9 cut(s)	114, 129, 168, 173, 264, 325, 345, 383, 408
SfcI	CTRYAG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	2 cut(s)	291, 368
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	4 cut(s)	34, 137, 356, 401
TaqI	TCGA	2 cut(s)	216, 456
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	180, 335, 372
Tru9I	TTAA	3 cut(s)	180, 335, 372
TseI	GCWGC	2 cut(s)	75, 287
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	251
Vha464I	CTTAAG	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	371
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	2 cut(s)	291, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.