Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006706

Physical Location & Seq

Genomic Coordinates Reverse (-)

409789 .. 411622

Gene Structure 1834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGAGATCAGTTGGGTTTGCTAAAGGTTACTGTTGTGCAAGGAAAAAGACTGGTAATTCGCGACTTCAAGAGTAGCGATCCTTACGTTGTTGTCAAGTTGGGCAATCAGATGGCAAAAACCAAGGTTATCAACAGTTGCCTTAATCCTGTTTGGAATGAAGAGCTAAGCTTCTATCCTACAGAACCCGTCGGAGTTCTAAATCTGGAAGTGTTTGACAAAGACTTCCTCAAGACGGATGATAAGATGGGACATGCTCACCTGAGCCTTCAGCCAATAGTCTCGGCTGCTAGATTGGGGCAAATATTACAAGTTTCTTCTTCTGGTGAGACAACATTAAGGAAGGTTGTCCCAGATAGTGACAACTGCCTAGTTAGGGAAAGCACCATAAATTGTGTAGATGGCGAGGTGGTGCAGAGTGTTTGGTTGAGGCTTTGTGATGTCGAGTCTGGGGAAATAGAATTGAAAATCAAGTTGTCTGGTGCGCCTGTTGCTCCCTCACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0007275 GO:0008047 GO:0008150 GO:0008289 GO:0009555 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

168

Amino Acids

18.45

Weight (kDa)

5.71

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 98	2.7e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47710 AT5G47710 AT5G47710 AT5G47710
fragaria_vesca	FvH4_3g00301 FvH4_3g00301 FvH4_3g00301
malus_domestica	MD05G1361900.v1.1 MD10G1339400.v1.1
prunus_persica	Prupe.4G003500_v2.0.a1 Prupe.4G003500_v2.0.a1
pyrus_communis	pycom05g32840
rosa_chinensis	RchiOBHm_Chr5g0000471
rosa_laevigata	RLG00000030870
rosa_multiflora	Rmu_sc0003949.1_g000007
rosa_rugosa	Rorug04G0383900 Rorug04G0384000 Rorug04G0384100 Rorug04G0384200 Rorug04G0384200 Rorug04G0384200
rosa_samantha	Rh5AG003900 Rh5BG005100 Rh5CG004200 Rh5DG004100
rosa_wichuraiana	Rw5G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	63
AclWI	GGATC	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	235, 376
AgsI	TTSAA	2 cut(s)	70, 466
AluBI	AGCT	2 cut(s)	166, 171
AluI	AGCT	2 cut(s)	166, 171
Alw26I	GTCTC	2 cut(s)	286, 323
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	1 cut(s)	487
AsuHPI	GGTGA	2 cut(s)	251, 338
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	3 cut(s)	106, 241, 395
BcoDI	GTCTC	2 cut(s)	286, 323
BfaI	CTAG	2 cut(s)	291, 371
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	288
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 376
Bse1I	ACTGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	235, 376
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	264, 335
BslI	CCNNNNNNNGG	2 cut(s)	235, 376
BsmAI	GTCTC	2 cut(s)	286, 323
BsmFI	GGGAC	2 cut(s)	264, 335
Bsp143I	GATC	2 cut(s)	7, 79
Bsp1720I	GCTNAGC	1 cut(s)	167
Bsp68I	TCGCGA	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	7, 79
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	34, 137, 504
Bst6I	CTCTTC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	167, 263
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	2 cut(s)	10, 82
BstMAI	GTCTC	2 cut(s)	286, 323
BstMBI	GATC	2 cut(s)	7, 79
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	244
BtuMI	TCGCGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	487
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	6 cut(s)	166, 171, 267, 274, 287, 433
CviKI_1	RGCY	6 cut(s)	166, 171, 267, 274, 287, 433
DdeI	CTNAG	2 cut(s)	167, 263
DpnI	GATC	2 cut(s)	9, 81
DpnII	GATC	2 cut(s)	7, 79
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	257
FaiI	YATR	2 cut(s)	255, 389
FaqI	GGGAC	2 cut(s)	264, 335
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	291, 371
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HindIII	AAGCTT	1 cut(s)	169
HinfI	GANTC	1 cut(s)	446
HphI	GGTGA	2 cut(s)	251, 338
Hpy188I	TCNGA	2 cut(s)	111, 194
Hpy188III	TCNNGA	4 cut(s)	62, 70, 206, 232
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	278, 337
HpyCH4III	ACNGT	3 cut(s)	34, 137, 504
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	40, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	2 cut(s)	167, 263
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	485
Kzo9I	GATC	2 cut(s)	7, 79
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	9 cut(s)	38, 162, 191, 275, 309, 366, 435, 465, 501
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	291, 371
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	28, 359
MalI	GATC	2 cut(s)	9, 81
MboI	GATC	2 cut(s)	7, 79
MboII	GAAGA	3 cut(s)	173, 309, 312
MluCI	AATT	3 cut(s)	57, 391, 461
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	239, 400, 423
MseI	TTAA	2 cut(s)	144, 338
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	491
NdeII	GATC	2 cut(s)	7, 79
NlaIII	CATG	1 cut(s)	257
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	359
NruI	TCGCGA	1 cut(s)	63
NspI	RCATGY	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
RruI	TCGCGA	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	144, 338
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	7, 79
SchI	GAGTC	1 cut(s)	455
SetI	ASST	8 cut(s)	30, 90, 129, 168, 173, 264, 348, 411
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	57, 391, 461
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	2 cut(s)	291, 371
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	34, 137, 504
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	444
TasI	AATT	3 cut(s)	57, 391, 461
Tru1I	TTAA	2 cut(s)	144, 338
Tru9I	TTAA	2 cut(s)	144, 338
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	251
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	2 cut(s)	291, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.