AT5G47800

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008724
Physical Location & Seq
Forward (+)
19353532 .. 19356448
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47800.2

Sequence Viewer

Length: 1680 bp
ATGAAGTTCATGAAAATCGGAACAAAGCCTGACACTTTCTACACTCAAGAGGCTTCAAGGATTTTGATAACAGACACACCTAACGATCTTGTTATTAGAATCAACAACACCACTTATCATCTCCACAGGTCTTGTCTTGTTCCAAAATGTGGGCTGTTGCGAAGGCTTTGCACTGATTTAGAGGAGTCTGATACTGTTACCATAGAGCTGAATGACATACCTGGTGGAGCCGATGCTTTTGAGTTGTGTGCTAAGTTCTGCTATGATATCACAATCAACCTCAGTGCTCATAACCTTGTGAATGCTCTCTGTGCCTCCAAGTTTCTTCGGATGTCTGATTCCGTTGACAAGGGAAATCTGTTACCAAAGCTTGAAGCTTTTTTCCACTCCTGCATTCTCCAAGGCTGGAAGGACTCCATTGTCACTTTGCAGTCCACTACCAAATTGCCAGAATGGTGTGAAAATCTTGGAATCGTCAGAAAGTGTATAGATTCAATTGTGGAGAAGATCCTCACTCCAACTTCAGAGGTCTCCTGGTCTCATACATACACCAGACCAGGCTACGCGAAGAGACAGCATCACTCTGTTCCAAGAGACTGGTGGACGGAAGACATATCAGACCTCGACTTGGACTTATTCCGCTGTGTCATCACAGCAGCCAGGTCAACCTTCACGTTGCCACCTCAGCTCATTGGTGAAGCTTTGCATGTCTACACTTGCCGTTGGTTACCATACTTCAAATCAAACAGCCATTCAGGTTTCTCAGTTAAAGAAAACGAAGCAGCACTGGAAAGGCATCGGCGTCTTGTTAACACAGTTGTGAATATGATTCCTGCAGATAAAGGGTCGGTTTCTGAGGGTTTTCTGCTGAGACTTGTTAGCATAGCGAGTTATGTGAGAGCATCTCTCACAACAAAGACTGAGTTGATTAGAAAATCTAGTCTGCAACTCGAGGAGGCAACTCTTGAAGACCTCTTGTTGCCTTCACACTCATCCTCTCATCTCCATCGCTACGATACCGACTTGGTTGCTACAGTTCTTGAGAGTTTTTTAATGCTCTGGAGAAGACAGTCTTCTGCGCATCTTTCTAGTAACAACACTCAATTGCTGCATTCAATCAGGAAGGTGGCAAAGCTTATTGACTCCTATCTTCAGGCAGTCGCACAAGATGTCCATATGCCAGTTTCCAAATTTGTGTCTCTTTCTGAGGCAGTGCCCGACATTGCACGCCAGAGCCATGACAGACTTTACAAAGCGATCAACATATTTCTCAAGGTGCATCCCGAGATAAGCAAAGAAGAGAAAAAACGACTATGCAGAAGTCTTGACTGCCAGAAATTGTCTGCACAAGTACGTGCACACGCTGTGAAAAATGAGAGGATGCCATTAAGAACGGTCGTCCAAGCACTCTTCTTCGACCAAGAGAGCGGTTCCAAGGGAGCATCAAGTCGATCAGAGAGCCAAGAACTCTTCACAAGAGGTAAAGAGACACCCACTGATGAACATAGCATGATGCACAAGCTTCACCTAGGTCCAGCTTCTACAGGGAAAGCTAAGAACGTGCTTGAAGAGGGATGCAAAAGAGGAGAAGAGAAAACCAGATCCAGTACAGATCCTAAGAAGATAGTGTGGAAAGGAACAGGGTCAGAACATAAGCATCATATAAGTAGAGACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

559

Amino Acids

63.3

Weight (kDa)

8.78

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 312 - 563 1.4e-79 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 419
Acc16I TGCGCA 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 149
AccBSI CCGCTC 1 cut(s) 1428
AccI GTMKAC 1 cut(s) 711
AccII CGCG 1 cut(s) 566
AciI CCGC 2 cut(s) 640, 1428
AclWI GGATC 3 cut(s) 502, 1596, 1607
AcsI RAATTY 1 cut(s) 1190
AcuI CTGAAG 2 cut(s) 507, 1136
AcyI GRCGYC 1 cut(s) 802
AdeI CACNNNGTG 1 cut(s) 1366
AfaI GTAC 2 cut(s) 1353, 1609
AfiI CCNNNNNNNGG 2 cut(s) 149, 628
AgsI TTSAA 7 cut(s) 57, 374, 495, 739, 968, 1116, 1568
AjnI CCWGG 4 cut(s) 220, 533, 556, 659
AleI CACNNNNGTG 1 cut(s) 818
AluBI AGCT 9 cut(s) 208, 370, 377, 688, 701, 1135, 1522, 1538, 1553
AluI AGCT 9 cut(s) 208, 370, 377, 688, 701, 1135, 1522, 1538, 1553
Alw21I GWGCWC 2 cut(s) 289, 1360
Alw26I GTCTC 8 cut(s) 535, 543, 565, 588, 865, 1203, 1481, 1665
Alw44I GTGCAC 1 cut(s) 1356
AlwI GGATC 3 cut(s) 502, 1596, 1607
Ama87I CYCGRG 2 cut(s) 950, 1283
ApaLI GTGCAC 1 cut(s) 1356
ApeKI GCWGC 3 cut(s) 656, 782, 1108
ApoI RAATTY 1 cut(s) 1190
AspA2I CCTAGG 1 cut(s) 1528
AspLEI GCGC 1 cut(s) 1081
AspS9I GGNCC 1 cut(s) 1532
AsuHPI GGTGA 2 cut(s) 707, 1517
AvaI CYCGRG 2 cut(s) 950, 1283
AvaII GGWCC 1 cut(s) 1532
AvrII CCTAGG 1 cut(s) 1528
BaeGI GKGCMC 2 cut(s) 1218, 1360
BbsI GAAGAC 4 cut(s) 615, 975, 1065, 1072
Bbv12I GWGCWC 2 cut(s) 289, 1360
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 668, 794, 1095
BccI CCATC 1 cut(s) 1014
BceAI ACGGC 1 cut(s) 705
BcgI CGANNNNNNTGC 4 cut(s) 150, 184, 1010, 1044
BciT130I CCWGG 4 cut(s) 222, 535, 558, 661
BcoDI GTCTC 8 cut(s) 535, 543, 565, 588, 865, 1203, 1481, 1665
BfaI CTAG 3 cut(s) 939, 1089, 1529
BfmI CTRYAG 3 cut(s) 834, 1032, 1542
BisI GCNGC 3 cut(s) 657, 783, 1109
BlnI CCTAGG 1 cut(s) 1528
BlsI GCNGC 3 cut(s) 658, 784, 1110
Bme1390I CCNGG 4 cut(s) 222, 535, 558, 661
Bme18I GGWCC 1 cut(s) 1532
BmeT110I CYCGRG 2 cut(s) 950, 1283
BmgT120I GGNCC 1 cut(s) 1532
BmiI GGNNCC 2 cut(s) 229, 1432
BmrFI CCNGG 4 cut(s) 222, 535, 558, 661
BpiI GAAGAC 4 cut(s) 615, 975, 1065, 1072
BplI GAGNNNNNCTC 4 cut(s) 889, 921, 891, 923
BpmI CTGGAG 1 cut(s) 1081
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 3 cut(s) 30, 1061, 1256
BsaAI YACGTR 1 cut(s) 1355
BsaHI GRCGYC 1 cut(s) 802
BsaI GGTCTC 2 cut(s) 535, 543
BsaJI CCNNGG 3 cut(s) 400, 1434, 1528
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 628
Bse1I ACTGG 4 cut(s) 602, 792, 1181, 1605
Bse3DI GCAATG 1 cut(s) 1221
BseBI CCWGG 4 cut(s) 222, 535, 558, 661
BseDI CCNNGG 3 cut(s) 400, 1434, 1528
BseGI GGATG 5 cut(s) 336, 992, 1279, 1386, 1580
BseLI CCNNNNNNNGG 2 cut(s) 149, 628
BseMI GCAATG 1 cut(s) 1221
BseMII CTCAG 7 cut(s) 295, 698, 777, 846, 860, 912, 1197
BseNI ACTGG 4 cut(s) 602, 792, 1181, 1605
BseRI GAGGAG 3 cut(s) 197, 968, 1599
BseSI GKGCMC 2 cut(s) 1218, 1360
BseXI GCAGC 3 cut(s) 668, 794, 1095
BsgI GTGCAG 1 cut(s) 1329
Bsh1236I CGCG 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 1398
BsiEI CGRYCG 1 cut(s) 1398
BsiHKAI GWGCWC 2 cut(s) 289, 1360
BsiHKCI CYCGRG 2 cut(s) 950, 1283
BslI CCNNNNNNNGG 2 cut(s) 149, 628
BsmAI GTCTC 8 cut(s) 535, 543, 565, 588, 865, 1203, 1481, 1665
BsmI GAATGC 3 cut(s) 307, 393, 1111
Bso31I GGTCTC 2 cut(s) 535, 543
BsoBI CYCGRG 2 cut(s) 950, 1283
Bsp1286I GDGCHC 3 cut(s) 289, 1218, 1360
Bsp143I GATC 6 cut(s) 85, 507, 1257, 1451, 1601, 1612
BspACI CCGC 2 cut(s) 640, 1428
BspCNI CTCAG 7 cut(s) 294, 697, 776, 847, 861, 913, 1198
BspFNI CGCG 1 cut(s) 566
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 229, 1432
BspMAI CTGCAG 1 cut(s) 838
BspPI GGATC 3 cut(s) 502, 1596, 1607
BspTNI GGTCTC 2 cut(s) 535, 543
BsrBI CCGCTC 1 cut(s) 1428
BsrDI GCAATG 1 cut(s) 1221
BsrI ACTGG 4 cut(s) 602, 792, 1181, 1605
BssECI CCNNGG 3 cut(s) 400, 1434, 1528
BssMI GATC 6 cut(s) 85, 507, 1257, 1451, 1601, 1612
BssNI GRCGYC 1 cut(s) 802
BssT1I CCWWGG 3 cut(s) 400, 1434, 1528
Bst2UI CCWGG 4 cut(s) 222, 535, 558, 661
Bst4CI ACNGT 5 cut(s) 196, 817, 1036, 1071, 1396
Bst6I CTCTTC 6 cut(s) 563, 1293, 1415, 1475, 1563, 1584
BstACI GRCGYC 1 cut(s) 802
BstBAI YACGTR 1 cut(s) 1355
BstC8I GCNNGC 1 cut(s) 1228
BstEII GGTNACC 1 cut(s) 726
BstF5I GGATG 5 cut(s) 336, 992, 1279, 1386, 1580
BstFNI CGCG 1 cut(s) 566
BstHHI GCGC 1 cut(s) 1081
BstKTI GATC 6 cut(s) 88, 510, 1260, 1454, 1604, 1615
BstMAI GTCTC 8 cut(s) 535, 543, 565, 588, 865, 1203, 1481, 1665
BstMBI GATC 6 cut(s) 85, 507, 1257, 1451, 1601, 1612
BstMCI CGRYCG 1 cut(s) 1398
BstMWI GCNNNNNNNGC 2 cut(s) 311, 685
BstNI CCWGG 4 cut(s) 222, 535, 558, 661
BstNSI RCATGY 1 cut(s) 710
BstPI GGTNACC 1 cut(s) 726
BstSCI CCNGG 4 cut(s) 220, 533, 556, 659
BstSFI CTRYAG 3 cut(s) 834, 1032, 1542
BstSLI GKGCMC 2 cut(s) 1218, 1360
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 3 cut(s) 668, 794, 1095
BstV2I GAAGAC 4 cut(s) 615, 975, 1065, 1072
BstX2I RGATCY 3 cut(s) 507, 1601, 1612
BstXI CCANNNNNNTGG 1 cut(s) 597
BstYI RGATCY 3 cut(s) 507, 1601, 1612
BtgZI GCGATG 1 cut(s) 992
BtsCI GGATG 5 cut(s) 336, 992, 1279, 1386, 1580
BtsI GCAGTG 1 cut(s) 1218
BtsIMutI CAGTG 5 cut(s) 171, 289, 785, 1218, 1494
Cac8I GCNNGC 1 cut(s) 1228
CciI TCATGA 1 cut(s) 9
CfoI GCGC 1 cut(s) 1081
Cfr13I GGNCC 1 cut(s) 1532
CseI GACGC 1 cut(s) 791
CsiI ACCWGGT 1 cut(s) 220
Csp6I GTAC 2 cut(s) 1352, 1608
CspCI CAANNNNNGTGG 2 cut(s) 113, 148
CviAII CATG 4 cut(s) 10, 707, 1238, 1510
CviQI GTAC 2 cut(s) 1352, 1608
DpnI GATC 6 cut(s) 87, 509, 1259, 1453, 1603, 1614
DpnII GATC 6 cut(s) 85, 507, 1257, 1451, 1601, 1612
DraIII CACNNNGTG 1 cut(s) 1366
DrdI GACNNNNNNGTC 1 cut(s) 419
DseDI GACNNNNNNGTC 1 cut(s) 419
Eam1104I CTCTTC 6 cut(s) 563, 1293, 1415, 1475, 1563, 1584
EarI CTCTTC 6 cut(s) 563, 1293, 1415, 1475, 1563, 1584
Eco130I CCWWGG 3 cut(s) 400, 1434, 1528
Eco31I GGTCTC 2 cut(s) 535, 543
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 1532
Eco57I CTGAAG 2 cut(s) 507, 1136
Eco88I CYCGRG 2 cut(s) 950, 1283
Eco91I GGTNACC 1 cut(s) 726
EcoO65I GGTNACC 1 cut(s) 726
EcoRII CCWGG 4 cut(s) 220, 533, 556, 659
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 3 cut(s) 400, 1434, 1528
ErhI CCWWGG 3 cut(s) 400, 1434, 1528
FaeI CATG 4 cut(s) 13, 710, 1241, 1513
FalI AAGNNNNNCTT 2 cut(s) 1057, 1089
FatI CATG 4 cut(s) 9, 706, 1237, 1509
FauNDI CATATG 1 cut(s) 1176
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 3 cut(s) 657, 783, 1109
FokI GGATG 5 cut(s) 343, 979, 1266, 1393, 1587
Fsp4HI GCNGC 3 cut(s) 657, 783, 1109
FspBI CTAG 3 cut(s) 939, 1089, 1529
FspI TGCGCA 1 cut(s) 1080
GlaI GCGC 1 cut(s) 1080
GluI GCNGC 3 cut(s) 657, 783, 1109
GsuI CTGGAG 1 cut(s) 1081
HgaI GACGC 1 cut(s) 791
HhaI GCGC 1 cut(s) 1081
Hin1I GRCGYC 1 cut(s) 802
Hin1II CATG 4 cut(s) 13, 710, 1241, 1513
Hin6I GCGC 1 cut(s) 1079
HinP1I GCGC 1 cut(s) 1079
HincII GTYRAC 3 cut(s) 346, 666, 811
HindII GTYRAC 3 cut(s) 346, 666, 811
HindIII AAGCTT 5 cut(s) 368, 375, 699, 1133, 1520
HinfI GANTC 8 cut(s) 99, 185, 338, 413, 471, 491, 829, 1142
HpaI GTTAAC 1 cut(s) 811
HphI GGTGA 2 cut(s) 707, 1517
Hpy166II GTNNAC 7 cut(s) 346, 435, 603, 666, 712, 811, 1358
Hpy188III TCNNGA 8 cut(s) 10, 47, 965, 1040, 1060, 1120, 1283, 1325
Hpy8I GTNNAC 7 cut(s) 346, 435, 603, 666, 712, 811, 1358
HpyAV CCTTC 5 cut(s) 156, 403, 679, 993, 1117
HpyCH4III ACNGT 5 cut(s) 196, 817, 1036, 1071, 1396
HpyCH4IV ACGT 3 cut(s) 674, 1354, 1560
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 685
HpySE526I ACGT 3 cut(s) 674, 1354, 1560
Hsp92I GRCGYC 1 cut(s) 802
Hsp92II CATG 4 cut(s) 13, 710, 1241, 1513
HspAI GCGC 1 cut(s) 1079
KspAI GTTAAC 1 cut(s) 811
Kzo9I GATC 6 cut(s) 85, 507, 1257, 1451, 1601, 1612
LmnI GCTCC 2 cut(s) 227, 1439
Lsp1109I GCAGC 3 cut(s) 668, 794, 1095
MabI ACCWGGT 1 cut(s) 220
MaeI CTAG 3 cut(s) 939, 1089, 1529
MaeII ACGT 3 cut(s) 674, 1354, 1560
MaeIII GTNAC 5 cut(s) 196, 360, 421, 726, 1091
MalI GATC 6 cut(s) 87, 509, 1259, 1453, 1603, 1614
MbiI CCGCTC 1 cut(s) 1428
MboI GATC 6 cut(s) 85, 507, 1257, 1451, 1601, 1612
MfeI CAATTG 2 cut(s) 495, 1103
MflI RGATCY 3 cut(s) 507, 1601, 1612
MhlI GDGCHC 3 cut(s) 289, 1218, 1360
MluCI AATT 5 cut(s) 443, 495, 1103, 1190, 1337
MlyI GAGTC 3 cut(s) 194, 407, 1136
MmeI TCCRAC 1 cut(s) 542
MseI TTAA 4 cut(s) 768, 810, 1052, 1388
MslI CAYNNNNRTG 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 642
MspR9I CCNGG 4 cut(s) 222, 535, 558, 661
MunI CAATTG 2 cut(s) 495, 1103
Mva1269I GAATGC 3 cut(s) 307, 393, 1111
MvaI CCWGG 4 cut(s) 222, 535, 558, 661
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 311, 685
NdeI CATATG 1 cut(s) 1176
NdeII GATC 6 cut(s) 85, 507, 1257, 1451, 1601, 1612
NlaIII CATG 4 cut(s) 13, 710, 1241, 1513
NlaIV GGNNCC 2 cut(s) 229, 1432
NmuCI GTSAC 1 cut(s) 421
NsbI TGCGCA 1 cut(s) 1080
NspI RCATGY 1 cut(s) 710
OliI CACNNNNGTG 1 cut(s) 818
PaeR7I CTCGAG 1 cut(s) 950
PagI TCATGA 1 cut(s) 9
PctI GAATGC 3 cut(s) 307, 393, 1111
PfeI GAWTC 5 cut(s) 99, 338, 471, 491, 829
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 3 cut(s) 658, 784, 1110
PleI GAGTC 3 cut(s) 193, 407, 1136
PpsI GAGTC 3 cut(s) 193, 407, 1136
Ppu21I YACGTR 1 cut(s) 1355
Psp6I CCWGG 4 cut(s) 220, 533, 556, 659
PspEI GGTNACC 1 cut(s) 726
PspGI CCWGG 4 cut(s) 220, 533, 556, 659
PspN4I GGNNCC 2 cut(s) 229, 1432
PspPI GGNCC 1 cut(s) 1532
PspXI VCTCGAGB 1 cut(s) 950
PstI CTGCAG 1 cut(s) 838
PsuI RGATCY 3 cut(s) 507, 1601, 1612
RsaI GTAC 2 cut(s) 1353, 1609
RsaNI GTAC 2 cut(s) 1352, 1608
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 4 cut(s) 768, 810, 1052, 1388
SatI GCNGC 3 cut(s) 657, 783, 1109
Sau3AI GATC 6 cut(s) 85, 507, 1257, 1451, 1601, 1612
Sau96I GGNCC 1 cut(s) 1532
SchI GAGTC 3 cut(s) 194, 407, 1136
ScrFI CCNGG 4 cut(s) 222, 535, 558, 661
SduI GDGCHC 3 cut(s) 289, 1218, 1360
SexAI ACCWGGT 1 cut(s) 220
SfcI CTRYAG 3 cut(s) 834, 1032, 1542
Sfr274I CTCGAG 1 cut(s) 950
SinI GGWCC 1 cut(s) 1532
SlaI CTCGAG 1 cut(s) 950
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 4 cut(s) 45, 950, 1040, 1271
SmoI CTYRAG 4 cut(s) 45, 950, 1040, 1271
Sse9I AATT 5 cut(s) 443, 495, 1103, 1190, 1337
SsiI CCGC 2 cut(s) 640, 1428
SspMI CTAG 3 cut(s) 939, 1089, 1529
StyD4I CCNGG 4 cut(s) 220, 533, 556, 659
StyI CCWWGG 3 cut(s) 400, 1434, 1528
TaaI ACNGT 5 cut(s) 196, 817, 1036, 1071, 1396
TaiI ACGT 3 cut(s) 677, 1357, 1563
TaqI TCGA 4 cut(s) 624, 951, 1416, 1450
TasI AATT 5 cut(s) 443, 495, 1103, 1190, 1337
TatI WGTACW 1 cut(s) 1607
TfiI GAWTC 5 cut(s) 99, 338, 471, 491, 829
Tru1I TTAA 4 cut(s) 768, 810, 1052, 1388
Tru9I TTAA 4 cut(s) 768, 810, 1052, 1388
TscAI CASTG 5 cut(s) 178, 289, 792, 1218, 1501
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 3 cut(s) 656, 782, 1108
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 3 cut(s) 17, 26, 1515
TspGWI ACGGA 2 cut(s) 331, 620
TspRI CASTG 5 cut(s) 178, 289, 792, 1218, 1501
Van91I CCANNNNNTGG 1 cut(s) 149
VneI GTGCAC 1 cut(s) 1356
VpaK11BI GGWCC 1 cut(s) 1532
XapI RAATTY 1 cut(s) 1190
XceI RCATGY 1 cut(s) 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XhoI CTCGAG 1 cut(s) 950
XmaJI CCTAGG 1 cut(s) 1528
XmiI GTMKAC 1 cut(s) 711
XspI CTAG 3 cut(s) 939, 1089, 1529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.