AT5G47870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015405
Physical Location & Seq
Reverse (-)
19384368 .. 19385869
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47870.1

Sequence Viewer

Length: 600 bp
ATGGCTTTGCAAGTGCAGCAAACTTCAGCAGCCTTCACAATCTCCTCACCATCCACCGCCGCTGCACGCATCAAACTCTCCCCTTTCAGAACCGTGGCGGTTAACCGCGGAGTTAGATGCAGCGGCGGTGGAGTCGGAGGCGGAGATGCCGGGAAGAAAAAAGCAGTTCCTAATTCGAATTATGTAGTTCCTATTGACAAATTCTCGTCTTCTTCGTCGATTACTAGGCCTTTGATTGAGATACTTCGTGACCTTAATAAGAAGATTCCTGATAACATTGTTAAGAGTCATGATCCTCCTTCTACTTCTGCTGCTACTTCTGGTTTTATCCCTTGGTACCATGCAAATCGGATGCTTAGCTTCTATGCTCCTGGTTGGTGTGGTGAAGTTAGAGATGTTATTTTCTCTGAGAATGGAAATGTTACTGTTGTTTATCGTCTCACTATTCGTGGCTCTGATGGTGAGGCACATCGTGAATCAACTGGGACAGTAACGACGACTGATGATCACATCGAGGATCCAGTTACTGCAGCTGAGGAAATAGCATTCTGCAGAGCATGTGCTCGATTTGGTCTCGGCTTGTATCTATACCACGAATAG

Protein Analysis

199

Amino Acids

21.41

Weight (kDa)

8.36

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47870
fragaria_vesca FvH4_4g21981
prunus_persica Prupe.1G209900_v2.0.a1 Prupe.1G209900_v2.0.a1 Prupe.1G209900_v2.0.a1
pyrus_communis pycom16g11550
rosa_chinensis RchiOBHm_Chr4g0428171
rosa_laevigata RLG00000007173
rosa_multiflora Rmu_sc0004940.1_g000007 Rmu_sc0009599.1_g000007
rosa_roxburghii Rroxscaffold_5G00369900
rosa_rugosa Rorug04G0223200
rosa_samantha Rh4AG280500 Rh4BG286000 Rh4DG283000
rosa_wichuraiana Rw4G024360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 336
AccII CGCG 1 cut(s) 108
AciI CCGC 8 cut(s) 57, 60, 98, 106, 108, 123, 126, 141
AclWI GGATC 3 cut(s) 287, 512, 525
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 1 cut(s) 338
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 2 cut(s) 360, 533
AluI AGCT 2 cut(s) 360, 533
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 2 cut(s) 443, 578
AlwI GGATC 3 cut(s) 287, 512, 525
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 6 cut(s) 16, 29, 62, 120, 311, 530
ApoI RAATTY 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 336
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 39, 395, 473
AsuII TTCGAA 1 cut(s) 176
BamHI GGATCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 565
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 6 cut(s) 28, 41, 49, 132, 298, 542
BccI CCATC 2 cut(s) 58, 452
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 443, 578
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 2 cut(s) 528, 550
BisI GCNGC 8 cut(s) 17, 30, 60, 63, 121, 124, 312, 531
BlpI GCTNAGC 1 cut(s) 356
BlsI GCNGC 8 cut(s) 18, 31, 61, 64, 122, 125, 313, 532
Bme1390I CCNGG 2 cut(s) 151, 372
BmiI GGNNCC 2 cut(s) 338, 519
BmrFI CCNGG 2 cut(s) 151, 372
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 4 cut(s) 78, 107, 136, 342
BmuI ACTGGG 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 93, 106, 332
Bse1I ACTGG 2 cut(s) 487, 521
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 3 cut(s) 93, 106, 332
BseGI GGATG 2 cut(s) 50, 357
BseMII CTCAG 2 cut(s) 399, 525
BseNI ACTGG 2 cut(s) 487, 521
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 6 cut(s) 28, 41, 49, 132, 298, 542
BsgI GTGCAG 2 cut(s) 35, 48
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 229
BshNI GGYRCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 565
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 499
BsmAI GTCTC 2 cut(s) 443, 578
BsmBI CGTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 499
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 1 cut(s) 229
Bso31I GGTCTC 1 cut(s) 578
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 3 cut(s) 292, 505, 517
Bsp1720I GCTNAGC 1 cut(s) 356
BspACI CCGC 8 cut(s) 57, 60, 98, 106, 108, 123, 126, 141
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 2 cut(s) 400, 526
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 338, 519
BspMAI CTGCAG 2 cut(s) 532, 554
BspPI GGATC 3 cut(s) 287, 512, 525
BspT104I TTCGAA 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 578
BsrI ACTGG 2 cut(s) 487, 521
BssECI CCNNGG 3 cut(s) 93, 106, 332
BssMI GATC 3 cut(s) 292, 505, 517
BssT1I CCWWGG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 94, 427, 490
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 3 cut(s) 356, 408, 534
BstDSI CCRYGG 2 cut(s) 93, 106
BstF5I GGATG 2 cut(s) 50, 357
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 3 cut(s) 295, 508, 520
BstMAI GTCTC 2 cut(s) 443, 578
BstMBI GATC 3 cut(s) 292, 505, 517
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 561
BstSCI CCNGG 2 cut(s) 149, 370
BstSFI CTRYAG 2 cut(s) 528, 550
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 6 cut(s) 28, 41, 49, 132, 298, 542
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 1 cut(s) 229
BtgI CCRYGG 2 cut(s) 93, 106
BtsCI GGATG 2 cut(s) 50, 357
Cac8I GCNNGC 1 cut(s) 67
CaiI CAGNNNCTG 1 cut(s) 527
CciI TCATGA 1 cut(s) 289
Cfr42I CCGCGG 1 cut(s) 109
Csp6I GTAC 1 cut(s) 337
CviAII CATG 3 cut(s) 290, 341, 558
CviJI RGCY 7 cut(s) 5, 32, 229, 360, 453, 533, 579
CviKI_1 RGCY 7 cut(s) 5, 32, 229, 360, 453, 533, 579
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 3 cut(s) 356, 408, 534
DpnI GATC 3 cut(s) 294, 507, 519
DpnII GATC 3 cut(s) 292, 505, 517
DraIII CACNNNGTG 1 cut(s) 473
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 332
Eco147I AGGCCT 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 3 cut(s) 293, 344, 561
FaiI YATR 6 cut(s) 183, 291, 342, 366, 559, 589
FaqI GGGAC 1 cut(s) 499
FatI CATG 3 cut(s) 289, 340, 557
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 8 cut(s) 17, 30, 60, 63, 121, 124, 312, 531
FokI GGATG 2 cut(s) 37, 364
Fsp4HI GCNGC 8 cut(s) 17, 30, 60, 63, 121, 124, 312, 531
FspBI CTAG 1 cut(s) 225
GluI GCNGC 8 cut(s) 17, 30, 60, 63, 121, 124, 312, 531
HaeIII GGCC 1 cut(s) 229
HapII CCGG 1 cut(s) 150
Hin1II CATG 3 cut(s) 293, 344, 561
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 132, 265, 286, 476
HpaI GTTAAC 1 cut(s) 103
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 39, 395, 473
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 89, 137, 351, 409, 457
Hpy188III TCNNGA 4 cut(s) 248, 269, 290, 473
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 2 cut(s) 220, 499
HpyAV CCTTC 2 cut(s) 43, 309
HpyCH4III ACNGT 3 cut(s) 94, 427, 490
HpyCH4V TGCA 7 cut(s) 10, 16, 65, 120, 344, 530, 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 3 cut(s) 356, 408, 534
Hsp92II CATG 3 cut(s) 293, 344, 561
KpnI GGTACC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 505
KspAI GTTAAC 1 cut(s) 103
KspI CCGCGG 1 cut(s) 109
Kzo9I GATC 3 cut(s) 292, 505, 517
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 7 cut(s) 163, 282, 306, 357, 384, 468, 534
Lsp1109I GCAGC 6 cut(s) 28, 41, 49, 132, 298, 542
LweI GCATC 4 cut(s) 78, 107, 136, 342
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 4 cut(s) 248, 421, 490, 523
MalI GATC 3 cut(s) 294, 507, 519
MboI GATC 3 cut(s) 292, 505, 517
MboII GAAGA 4 cut(s) 166, 201, 204, 274
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 3 cut(s) 172, 178, 200
MlyI GAGTC 2 cut(s) 141, 295
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 6 cut(s) 55, 131, 306, 457, 508, 529
MseI TTAA 3 cut(s) 102, 255, 282
MspA1I CMGCKG 4 cut(s) 62, 108, 123, 533
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 151, 372
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 151
NdeII GATC 3 cut(s) 292, 505, 517
NlaIII CATG 3 cut(s) 293, 344, 561
NlaIV GGNNCC 2 cut(s) 338, 519
NmeAIII GCCGAG 1 cut(s) 555
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 1 cut(s) 561
NspV TTCGAA 1 cut(s) 176
PagI TCATGA 1 cut(s) 289
PceI AGGCCT 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 265, 476
PkrI GCNGC 8 cut(s) 18, 31, 61, 64, 122, 125, 313, 532
PleI GAGTC 2 cut(s) 140, 294
PpsI GAGTC 2 cut(s) 140, 294
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 338, 519
PstI CTGCAG 2 cut(s) 532, 554
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SacII CCGCGG 1 cut(s) 109
SaqAI TTAA 3 cut(s) 102, 255, 282
SatI GCNGC 8 cut(s) 17, 30, 60, 63, 121, 124, 312, 531
Sau3AI GATC 3 cut(s) 292, 505, 517
SchI GAGTC 2 cut(s) 141, 295
ScrFI CCNGG 2 cut(s) 151, 372
SduI GDGCHC 1 cut(s) 565
SetI ASST 3 cut(s) 255, 362, 535
SfaNI GCATC 4 cut(s) 78, 107, 136, 342
SfcI CTRYAG 2 cut(s) 528, 550
Sfr303I CCGCGG 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 176
SgrBI CCGCGG 1 cut(s) 109
Sse9I AATT 3 cut(s) 172, 178, 200
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 8 cut(s) 57, 60, 98, 106, 108, 123, 126, 141
SspMI CTAG 1 cut(s) 225
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 149, 370
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 3 cut(s) 94, 427, 490
TaqI TCGA 4 cut(s) 176, 218, 513, 565
TasI AATT 3 cut(s) 172, 178, 200
TauI GCSGC 2 cut(s) 62, 126
TfiI GAWTC 2 cut(s) 265, 476
Tru1I TTAA 3 cut(s) 102, 255, 282
Tru9I TTAA 3 cut(s) 102, 255, 282
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 6 cut(s) 16, 29, 62, 120, 311, 530
Tsp45I GTSAC 1 cut(s) 248
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 561
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.