Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015405

Physical Location & Seq

Genomic Coordinates Reverse (-)

24922595 .. 24926080

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21981.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTCTCCACACCACCAATGCCCTGCTCCCAAAACCGCTTCTTTGCGTCAACTCGCCGAGGATCGAGGTAGGGAAAGTCGCCGGAGCCGCAATCTGGGGGAGAAATCGAGGTGGGTTGTGGGTGTGTAAGAGCAGCAGCGATGGTGGGAAGAAGGGAGGAGGGGTGCCCAACTCGAATTACGTGGTGCCCTTAGACAAGTCCTTCTCTTATTCCAACTCGTCGTGTATCACTCGCCCTCTGGCTGAGATTCTCAGGGATTTGAATAAGAGGATTCCTGATAACATTATCAGTATACCTCCAGGGAATCAGTCCACCTTCATTCCTTGGTACCATGCGAACCGGATGCTGAGTTTCTATGCTCCTGGATGGTGTGGAGAAATCAGGGATGTAATATTTTCTGACAATGGAAGTGTGACTGTGGTATACCGTGTCACTGTACGAGGATCTGATGGAGAGGCACACCGTGAGTCAACCGGGACAGTATCACCGCGTGATGGCAACAATGTTGATCCAGTTGCTGCAGCAGAGGAAATAGCTTTCTGCAGGGCATGTGCCCGGTTTGGCCTCGGTCTGTATCTGTATCATGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.47

Weight (kDa)

8.55

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47870
fragaria_vesca	FvH4_4g21981
prunus_persica	Prupe.1G209900_v2.0.a1 Prupe.1G209900_v2.0.a1 Prupe.1G209900_v2.0.a1
pyrus_communis	pycom16g11550
rosa_chinensis	RchiOBHm_Chr4g0428171
rosa_laevigata	RLG00000007173
rosa_multiflora	Rmu_sc0004940.1_g000007 Rmu_sc0009599.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369900
rosa_rugosa	Rorug04G0223200
rosa_samantha	Rh4AG280500 Rh4BG286000 Rh4DG283000
rosa_wichuraiana	Rw4G024360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	3 cut(s)	166, 187, 330
AccI	GTMKAC	2 cut(s)	295, 426
AccII	CGCG	1 cut(s)	493
AciI	CCGC	3 cut(s)	38, 90, 491
AclWI	GGATC	3 cut(s)	71, 454, 506
AdeI	CACNNNGTG	2 cut(s)	467, 494
AfaI	GTAC	2 cut(s)	332, 441
AfiI	CCNNNNNNNGG	2 cut(s)	96, 497
AgsI	TTSAA	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	301, 364
AluBI	AGCT	1 cut(s)	539
AluI	AGCT	1 cut(s)	539
AlwI	GGATC	3 cut(s)	71, 454, 506
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	565
ApeKI	GCWGC	4 cut(s)	135, 138, 521, 524
Asp718I	GGTACC	1 cut(s)	330
AsuC2I	CCSGG	2 cut(s)	478, 559
AsuHPI	GGTGA	1 cut(s)	480
BaeGI	GKGCMC	3 cut(s)	171, 192, 559
BanI	GGYRCC	3 cut(s)	166, 187, 330
BbvI	GCAGC	4 cut(s)	147, 150, 508, 536
BccI	CCATC	4 cut(s)	137, 363, 446, 491
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	2 cut(s)	303, 366
BcnI	CCSGG	2 cut(s)	478, 559
BfmI	CTRYAG	2 cut(s)	522, 544
BisI	GCNGC	5 cut(s)	90, 136, 139, 522, 525
BlsI	GCNGC	5 cut(s)	91, 137, 140, 523, 526
Bme1390I	CCNGG	4 cut(s)	303, 366, 478, 559
BmiI	GGNNCC	4 cut(s)	88, 168, 189, 332
BmrFI	CCNGG	4 cut(s)	303, 366, 478, 559
BmsI	GCATC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	478, 559
BsaAI	YACGTR	1 cut(s)	184
BsaJI	CCNNGG	4 cut(s)	59, 302, 326, 568
BsaWI	WCCGGW	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 497
Bse1I	ACTGG	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	303, 366
BseDI	CCNNGG	4 cut(s)	59, 302, 326, 568
BseGI	GGATG	3 cut(s)	351, 374, 394
BseLI	CCNNNNNNNGG	2 cut(s)	96, 497
BseMII	CTCAG	3 cut(s)	237, 268, 341
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	3 cut(s)	171, 192, 559
BseXI	GCAGC	4 cut(s)	147, 150, 508, 536
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	1 cut(s)	567
BshNI	GGYRCC	3 cut(s)	166, 187, 330
BsiSI	CCGG	4 cut(s)	84, 343, 477, 559
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	2 cut(s)	96, 497
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	567
Bsp1286I	GDGCHC	3 cut(s)	171, 192, 559
Bsp143I	GATC	3 cut(s)	63, 446, 511
BspACI	CCGC	3 cut(s)	38, 90, 491
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	3 cut(s)	238, 267, 342
BspFNI	CGCG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	88, 168, 189, 332
BspMAI	CTGCAG	2 cut(s)	526, 548
BspPI	GGATC	3 cut(s)	71, 454, 506
BspT107I	GGYRCC	3 cut(s)	166, 187, 330
BsrI	ACTGG	1 cut(s)	515
BssECI	CCNNGG	4 cut(s)	59, 302, 326, 568
BssMI	GATC	3 cut(s)	63, 446, 511
BssNAI	GTATAC	2 cut(s)	296, 427
BssT1I	CCWWGG	1 cut(s)	326
Bst1107I	GTATAC	2 cut(s)	296, 427
Bst2UI	CCWGG	2 cut(s)	303, 366
Bst4CI	ACNGT	5 cut(s)	421, 431, 439, 467, 484
BstBAI	YACGTR	1 cut(s)	184
BstDEI	CTNAG	4 cut(s)	193, 246, 254, 350
BstF5I	GGATG	3 cut(s)	351, 374, 394
BstFNI	CGCG	1 cut(s)	493
BstKTI	GATC	3 cut(s)	66, 449, 514
BstMBI	GATC	3 cut(s)	63, 446, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	303, 366
BstNSI	RCATGY	1 cut(s)	555
BstSCI	CCNGG	4 cut(s)	301, 364, 476, 557
BstSFI	CTRYAG	2 cut(s)	522, 544
BstSLI	GKGCMC	3 cut(s)	171, 192, 559
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	4 cut(s)	147, 150, 508, 536
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BstZ17I	GTATAC	2 cut(s)	296, 427
BsuRI	GGCC	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	351, 374, 394
BtsIMutI	CAGTG	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	586
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	331, 440
CviAII	CATG	3 cut(s)	335, 552, 587
CviJI	RGCY	5 cut(s)	5, 89, 245, 539, 567
CviKI_1	RGCY	5 cut(s)	5, 89, 245, 539, 567
CviQI	GTAC	2 cut(s)	331, 440
DdeI	CTNAG	4 cut(s)	193, 246, 254, 350
DpnI	GATC	3 cut(s)	65, 448, 513
DpnII	GATC	3 cut(s)	63, 446, 511
DraIII	CACNNNGTG	2 cut(s)	467, 494
Eco130I	CCWWGG	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	301, 364
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	3 cut(s)	338, 555, 590
FaiI	YATR	6 cut(s)	296, 336, 360, 427, 553, 588
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	3 cut(s)	334, 551, 586
FblI	GTMKAC	2 cut(s)	295, 426
Fnu4HI	GCNGC	5 cut(s)	90, 136, 139, 522, 525
FokI	GGATG	3 cut(s)	358, 381, 401
Fsp4HI	GCNGC	5 cut(s)	90, 136, 139, 522, 525
GluI	GCNGC	5 cut(s)	90, 136, 139, 522, 525
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	4 cut(s)	84, 343, 477, 559
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	338, 555, 590
HincII	GTYRAC	2 cut(s)	52, 474
HindII	GTYRAC	2 cut(s)	52, 474
HinfI	GANTC	4 cut(s)	250, 274, 307, 470
HpaII	CCGG	4 cut(s)	84, 343, 477, 559
HphI	GGTGA	1 cut(s)	480
Hpy166II	GTNNAC	5 cut(s)	52, 296, 315, 427, 474
Hpy188I	TCNGA	2 cut(s)	403, 451
Hpy188III	TCNNGA	2 cut(s)	278, 587
Hpy8I	GTNNAC	5 cut(s)	52, 296, 315, 427, 474
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	148, 214, 328
HpyCH4III	ACNGT	5 cut(s)	421, 431, 439, 467, 484
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	524, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	4 cut(s)	193, 246, 254, 350
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	338, 555, 590
KpnI	GGTACC	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	63, 446, 511
LmnI	GCTCC	3 cut(s)	33, 86, 367
Lsp1109I	GCAGC	4 cut(s)	147, 150, 508, 536
LweI	GCATC	1 cut(s)	336
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	415, 433
MalI	GATC	3 cut(s)	65, 448, 513
MboI	GATC	3 cut(s)	63, 446, 511
MboII	GAAGA	1 cut(s)	163
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	3 cut(s)	171, 192, 559
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	240
MspI	CCGG	4 cut(s)	84, 343, 477, 559
MspR9I	CCNGG	4 cut(s)	303, 366, 478, 559
MvaI	CCWGG	2 cut(s)	303, 366
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	2 cut(s)	478, 559
NdeII	GATC	3 cut(s)	63, 446, 511
NlaIII	CATG	3 cut(s)	338, 555, 590
NlaIV	GGNNCC	4 cut(s)	88, 168, 189, 332
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	415, 433
NspI	RCATGY	1 cut(s)	555
PagI	TCATGA	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	250, 274, 307
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	91, 137, 140, 523, 526
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Ppu21I	YACGTR	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	301, 364
PspGI	CCWGG	2 cut(s)	301, 364
PspN4I	GGNNCC	4 cut(s)	88, 168, 189, 332
PstI	CTGCAG	2 cut(s)	526, 548
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	2 cut(s)	332, 441
RsaNI	GTAC	2 cut(s)	331, 440
SatI	GCNGC	5 cut(s)	90, 136, 139, 522, 525
Sau3AI	GATC	3 cut(s)	63, 446, 511
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	4 cut(s)	303, 366, 478, 559
SduI	GDGCHC	3 cut(s)	171, 192, 559
SetI	ASST	6 cut(s)	72, 115, 186, 301, 320, 541
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	2 cut(s)	522, 544
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	3 cut(s)	38, 90, 491
SspI	AATATT	1 cut(s)	396
StyD4I	CCNGG	4 cut(s)	301, 364, 476, 557
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	5 cut(s)	421, 431, 439, 467, 484
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	66, 109, 176
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	1 cut(s)	178
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	250, 274, 307
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	2 cut(s)	415, 433
TseI	GCWGC	4 cut(s)	135, 138, 521, 524
Tsp45I	GTSAC	2 cut(s)	415, 433
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	442
XceI	RCATGY	1 cut(s)	555
XmiI	GTMKAC	2 cut(s)	295, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.