AT5G50175

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017925
Physical Location & Seq
Forward (+)
20427749 .. 20428719
971 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G50175.1

Sequence Viewer

Length: 339 bp
ATGGATCTTTGCAAAAGTAGAGCAACAACCACCATTACTCTCTCATGTCTCATCTTCTTTGTTTCTTCATTCTACACAATCTCCACCGCTAAATCTGTCACGAATCCGCTCTATCAACTCCTTCTGTTCATCGGCTTCTTCCTCGCTGCAGCCTTGTCGCTTGTTTTACTGGTGGCAGCAGCACGAGCCACCATGGTTGCGTGGATAACGGTCCTCGTCTTACTGGCCTTTTCGGGTACACGTCGCCGTGTTTTAGCGCGGAGGGGGAAGACGATCACGGCGGACGTGGCGATGAGCTTGTTCAGGGTTCTGATTAGAGAAGCAAATCCTCGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.28

Weight (kDa)

11.45

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50175
prunus_persica Prupe.8G004000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249651
rosa_multiflora Rmu_co8264641.1_g000001 Rmu_sc0000704.1_g000046 Rmu_sc0004691.1_g000002
rosa_rugosa Rorug05G0494300
rosa_samantha Rh6AG004400 Rh6BG005700 Rh6CG003400
rosa_wichuraiana Rw6G000480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AccII CGCG 1 cut(s) 259
AciI CCGC 4 cut(s) 87, 107, 259, 281
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 239
AjiI CACGTC 2 cut(s) 242, 286
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 4 cut(s) 146, 149, 176, 179
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 211
AvaII GGWCC 1 cut(s) 211
BauI CACGAG 2 cut(s) 183, 330
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 4 cut(s) 133, 161, 188, 191
BceAI ACGGC 2 cut(s) 231, 294
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BcoDI GTCTC 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 4 cut(s) 147, 150, 177, 180
BlsI GCNGC 4 cut(s) 148, 151, 178, 181
Bme18I GGWCC 1 cut(s) 211
BmgBI CACGTC 2 cut(s) 242, 286
BmgT120I GGNCC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bse1I ACTGG 2 cut(s) 174, 228
BseDI CCNNGG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 174, 228
BseXI GCAGC 4 cut(s) 133, 161, 188, 191
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 2 cut(s) 4, 273
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 4 cut(s) 87, 107, 259, 281
BspANI GGCC 1 cut(s) 227
BspFNI CGCG 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 109
BsrI ACTGG 2 cut(s) 174, 228
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 4, 273
BssSI CACGAG 2 cut(s) 183, 330
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 2 cut(s) 183, 330
Bst4CI ACNGT 1 cut(s) 211
BstDSI CCRYGG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 259
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 2 cut(s) 7, 276
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 4, 273
BstMWI GCNNNNNNNGC 2 cut(s) 185, 287
BstSFI CTRYAG 1 cut(s) 147
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 4 cut(s) 133, 161, 188, 191
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 2 cut(s) 242, 286
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 237
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 2 cut(s) 45, 193
CviJI RGCY 5 cut(s) 135, 152, 188, 227, 297
CviKI_1 RGCY 5 cut(s) 135, 152, 188, 227, 297
CviQI GTAC 1 cut(s) 237
DpnI GATC 2 cut(s) 6, 275
DpnII GATC 2 cut(s) 4, 273
EciI GGCGGA 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 48, 196
FaiI YATR 2 cut(s) 46, 194
FatI CATG 2 cut(s) 44, 192
Fnu4HI GCNGC 4 cut(s) 147, 150, 177, 180
Fsp4HI GCNGC 4 cut(s) 147, 150, 177, 180
GlaI GCGC 1 cut(s) 258
GluI GCNGC 4 cut(s) 147, 150, 177, 180
HaeIII GGCC 1 cut(s) 227
HhaI GCGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 48, 196
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 241, 285
HpyCH4V TGCA 2 cut(s) 12, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 287
HpySE526I ACGT 2 cut(s) 241, 285
Hsp92II CATG 2 cut(s) 48, 196
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 2 cut(s) 4, 273
LpnPI CCDG 3 cut(s) 155, 209, 289
Lsp1109I GCAGC 4 cut(s) 133, 161, 188, 191
MaeII ACGT 2 cut(s) 241, 285
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 6, 275
MbiI CCGCTC 1 cut(s) 109
MboI GATC 2 cut(s) 4, 273
MboII GAAGA 4 cut(s) 46, 57, 130, 280
MflI RGATCY 1 cut(s) 4
MnlI CCTC 4 cut(s) 152, 224, 255, 339
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 185, 287
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 4, 273
NlaIII CATG 2 cut(s) 48, 196
NmuCI GTSAC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 4 cut(s) 148, 151, 178, 181
PspPI GGNCC 1 cut(s) 211
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SatI GCNGC 4 cut(s) 147, 150, 177, 180
Sau3AI GATC 2 cut(s) 4, 273
Sau96I GGNCC 1 cut(s) 211
SetI ASST 3 cut(s) 244, 288, 299
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 211
SsiI CCGC 4 cut(s) 87, 107, 259, 281
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 2 cut(s) 244, 288
TfiI GAWTC 1 cut(s) 103
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 4 cut(s) 146, 149, 176, 179
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 57, 118
VpaK11BI GGWCC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.