Rh6CG003400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017925
Physical Location & Seq
Reverse (-)
517696 .. 518061
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG003400.1

Sequence Viewer

Length: 366 bp
ATGATTTTGGCTGCAACGAAATCAGCAACGACGACATTCCTGCTGTCCATATCGTTGTCATCTCTCCTAGTACTATTTTACAGCGAGTACCATATCACAATGTCATGCTTGTTACTCATCGGAGCGTCCCTGGTTTTCGCATTGGTCGTGATCACGGCCCGTGCCACCATGATCGCCTGGATCACGGTGTTGGTGATGCTCACCTTCGCCGGAAATCGACGTCGGGTTTTGGTTCGAAGGGGAAGCCTCATCACCTCCGATGTCGCCGTCCACTTGTTCAGGGTCGTCATCAAAGAGAGAGGGCTTCTCGCCGTCGCTTGTGCCGCACTTCTCAGTCTCACCGCCATGCTCGGCTTAACGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.05

Weight (kDa)

10.85

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50175
prunus_persica Prupe.8G004000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249651
rosa_multiflora Rmu_co8264641.1_g000001 Rmu_sc0000704.1_g000046 Rmu_sc0004691.1_g000002
rosa_rugosa Rorug05G0494300
rosa_samantha Rh6AG004400 Rh6BG005700 Rh6CG003400
rosa_wichuraiana Rw6G000480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 223
AciI CCGC 2 cut(s) 324, 342
AclWI GGATC 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 220
AfaI GTAC 2 cut(s) 72, 89
AjnI CCWGG 2 cut(s) 129, 176
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 1 cut(s) 188
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 4 cut(s) 193, 205, 244, 331
AsuII TTCGAA 1 cut(s) 235
BceAI ACGGC 3 cut(s) 171, 251, 296
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 2 cut(s) 131, 178
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 68
BisI GCNGC 2 cut(s) 12, 324
BlsI GCNGC 2 cut(s) 13, 325
BmcAI AGTACT 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 131, 178
BmgT120I GGNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 131, 178
BmsI GCATC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 291, 323
Bpu14I TTCGAA 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 131, 178
BseDI CCNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 346
BshFI GGCC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 235
Bsp143I GATC 3 cut(s) 150, 171, 180
BspACI CCGC 2 cut(s) 324, 342
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 345
BspPI GGATC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 150, 171, 180
BssNI GRCGYC 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 131, 178
Bst4CI ACNGT 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 332
BstKTI GATC 3 cut(s) 153, 174, 183
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 150, 171, 180
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 2 cut(s) 131, 178
BstSCI CCNGG 2 cut(s) 129, 176
BsuRI GGCC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 71, 88
CviAII CATG 3 cut(s) 105, 169, 346
CviJI RGCY 5 cut(s) 11, 158, 246, 304, 354
CviKI_1 RGCY 5 cut(s) 11, 158, 246, 304, 354
CviQI GTAC 2 cut(s) 71, 88
DdeI CTNAG 1 cut(s) 332
DpnI GATC 3 cut(s) 152, 173, 182
DpnII GATC 3 cut(s) 150, 171, 180
EcoRII CCWGG 2 cut(s) 129, 176
FaeI CATG 3 cut(s) 108, 172, 349
FaiI YATR 5 cut(s) 50, 93, 106, 170, 347
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 104, 168, 345
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 12, 324
Fsp4HI GCNGC 2 cut(s) 12, 324
FspBI CTAG 1 cut(s) 68
GluI GCNGC 2 cut(s) 12, 324
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 3 cut(s) 108, 172, 349
HpaII CCGG 1 cut(s) 210
HphI GGTGA 4 cut(s) 193, 205, 244, 331
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 122, 259, 365
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 4 cut(s) 34, 222, 225, 317
HpyAV CCTTC 2 cut(s) 214, 231
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 3 cut(s) 108, 172, 349
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 3 cut(s) 150, 171, 180
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 53, 116, 143, 163, 190, 223, 265
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 111
MalI GATC 3 cut(s) 152, 173, 182
MboI GATC 3 cut(s) 150, 171, 180
MnlI CCTC 3 cut(s) 257, 265, 293
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 131, 178
MvaI CCWGG 2 cut(s) 131, 178
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 3 cut(s) 150, 171, 180
NlaIII CATG 3 cut(s) 108, 172, 349
NmeAIII GCCGAG 1 cut(s) 330
NspV TTCGAA 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PkrI GCNGC 2 cut(s) 13, 325
Psp6I CCWGG 2 cut(s) 129, 176
PspGI CCWGG 2 cut(s) 129, 176
PspPI GGNCC 1 cut(s) 157
RsaI GTAC 2 cut(s) 72, 89
RsaNI GTAC 2 cut(s) 71, 88
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 2 cut(s) 12, 324
Sau3AI GATC 3 cut(s) 150, 171, 180
Sau96I GGNCC 1 cut(s) 157
ScaI AGTACT 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 131, 178
SetI ASST 3 cut(s) 206, 223, 257
SfaNI GCATC 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 344
SsiI CCGC 2 cut(s) 324, 342
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 129, 176
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 217, 235
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseI GCWGC 1 cut(s) 11
XspI CTAG 1 cut(s) 68
ZraI GACGTC 1 cut(s) 221
ZrmI AGTACT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.