Prupe.8G004000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017925
Physical Location & Seq
Reverse (-)
318582 .. 318947
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G004000.1

Sequence Viewer

Length: 366 bp
ATGATTTTGTCCAGAACACAAGCAGCTGCAACCACGACGTTCTTGCTGTCTTTCTTGGCATCTCTGTGGGTCCTCCTGTTCTACAACGACCACATCACAGTCCTCTTACTCCCAGTTCTGGGAGCGTTGATGGTACTAGCATTGGTTGTGATCGCGGCACGGACGACCATGATGGCGTGGATCACAGTGCTTGTGCTGCTAACATTTGCCGGGAATCGTCGTCGGGTTTTGGTTCGACGCGGGAAGCTCATCACCGCTGATGTCGCAATCTACTTGTTCCAGGTGATCATGAAAGAGAGAGGCCTCCTTGCCGTTGCTTGTGCAACGGTTCTCAGTCTCATGGCCATGCTTGGCTTCAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.34

Weight (kDa)

11.27

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50175
prunus_persica Prupe.8G004000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0249651
rosa_multiflora Rmu_co8264641.1_g000001 Rmu_sc0000704.1_g000046 Rmu_sc0004691.1_g000002
rosa_rugosa Rorug05G0494300
rosa_samantha Rh6AG004400 Rh6BG005700 Rh6CG003400
rosa_wichuraiana Rw6G000480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 155, 240
AciI CCGC 3 cut(s) 155, 240, 255
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 360
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 118, 119
AgsI TTSAA 1 cut(s) 358
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 2 cut(s) 26, 247
AluI AGCT 2 cut(s) 26, 247
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 1 cut(s) 188
AoxI GGCC 2 cut(s) 301, 342
ApeKI GCWGC 3 cut(s) 23, 26, 196
ApoI RAATTY 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 2 cut(s) 244, 295
AvaII GGWCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 344
BbvI GCAGC 3 cut(s) 13, 35, 183
BccI CCATC 2 cut(s) 124, 166
BceAI ACGGC 1 cut(s) 296
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 1 cut(s) 281
BclI TGATCA 1 cut(s) 285
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 137
BisI GCNGC 4 cut(s) 24, 27, 156, 197
BlsI GCNGC 4 cut(s) 25, 28, 157, 198
Bme1390I CCNGG 2 cut(s) 211, 281
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 211, 281
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 119
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 118, 119
BseMII CTCAG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 13, 35, 183
Bsh1236I CGCG 2 cut(s) 155, 240
BshFI GGCC 2 cut(s) 303, 344
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 118, 119
BsmAI GTCTC 1 cut(s) 341
BsnI GGCC 2 cut(s) 303, 344
Bsp143I GATC 3 cut(s) 150, 180, 285
BspACI CCGC 3 cut(s) 155, 240, 255
BspANI GGCC 2 cut(s) 303, 344
BspCNI CTCAG 1 cut(s) 345
BspFNI CGCG 2 cut(s) 155, 240
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 113
BssMI GATC 3 cut(s) 150, 180, 285
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 3 cut(s) 100, 187, 328
BstDEI CTNAG 1 cut(s) 332
BstFNI CGCG 2 cut(s) 155, 240
BstKTI GATC 3 cut(s) 153, 183, 288
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 150, 180, 285
BstMWI GCNNNNNNNGC 2 cut(s) 196, 263
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 209, 279
BstUI CGCG 2 cut(s) 155, 240
BstV1I GCAGC 3 cut(s) 13, 35, 183
BsuRI GGCC 2 cut(s) 303, 344
BtsIMutI CAGTG 1 cut(s) 192
CciI TCATGA 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 134
CviAII CATG 4 cut(s) 169, 289, 340, 346
CviJI RGCY 5 cut(s) 26, 247, 303, 344, 354
CviKI_1 RGCY 5 cut(s) 26, 247, 303, 344, 354
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 332
DpnI GATC 3 cut(s) 152, 182, 287
DpnII GATC 3 cut(s) 150, 180, 285
EaeI YGGCCR 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 279
FaeI CATG 4 cut(s) 172, 292, 343, 349
FaiI YATR 4 cut(s) 170, 290, 341, 347
FatI CATG 4 cut(s) 168, 288, 339, 345
FauI CCCGC 1 cut(s) 233
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 4 cut(s) 24, 27, 156, 197
Fsp4HI GCNGC 4 cut(s) 24, 27, 156, 197
FspBI CTAG 1 cut(s) 137
GluI GCNGC 4 cut(s) 24, 27, 156, 197
HaeIII GGCC 2 cut(s) 303, 344
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 172, 292, 343, 349
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 244, 295
Hpy188III TCNNGA 2 cut(s) 12, 289
Hpy99I CGWCG 4 cut(s) 40, 222, 225, 240
HpyCH4III ACNGT 3 cut(s) 100, 187, 328
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 29, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 263
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 4 cut(s) 172, 292, 343, 349
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 3 cut(s) 150, 180, 285
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 25, 89, 104, 126, 223, 266, 293
Lsp1109I GCAGC 3 cut(s) 13, 35, 183
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 38
MalI GATC 3 cut(s) 152, 182, 287
MboI GATC 3 cut(s) 150, 180, 285
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 344
MnlI CCTC 4 cut(s) 83, 113, 293, 314
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MslI CAYNNNNRTG 2 cut(s) 64, 344
Msp20I TGGCCA 1 cut(s) 344
MspA1I CMGCKG 2 cut(s) 26, 257
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 211, 281
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 2 cut(s) 155, 240
MwoI GCNNNNNNNGC 2 cut(s) 196, 263
NciI CCSGG 1 cut(s) 211
NdeII GATC 3 cut(s) 150, 180, 285
NlaIII CATG 4 cut(s) 172, 292, 343, 349
NlaIV GGNNCC 1 cut(s) 71
PagI TCATGA 1 cut(s) 288
PceI AGGCCT 1 cut(s) 303
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 25, 28, 157, 198
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 2 cut(s) 64, 344
SatI GCNGC 4 cut(s) 24, 27, 156, 197
Sau3AI GATC 3 cut(s) 150, 180, 285
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 211, 281
SetI ASST 4 cut(s) 28, 41, 249, 285
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 64, 344
Sse9I AATT 1 cut(s) 360
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 3 cut(s) 155, 240, 255
SspMI CTAG 1 cut(s) 137
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 209, 279
TaaI ACNGT 3 cut(s) 100, 187, 328
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 235
TasI AATT 1 cut(s) 360
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 214
TscAI CASTG 1 cut(s) 192
TseI GCWGC 3 cut(s) 23, 26, 196
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 360
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.