Rmu_co8264641.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8264641.1
Physical Location & Seq
Reverse (-)
363 .. 629
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8264641.1_g000001.1.cds

Sequence Viewer

Length: 267 bp
atgtcatgcttgttactcatcggagcgtccctggttttcgcattggtcgtgatcgcggcccgtgccaccatgatcgcctggatcacggtgctggtgatgcttaccttcgccggaaatcgacgtcgggttttggttcgacggggaagcctcatcacctccgatgtcgccgtccacttgttcagggtcgtcatcaaagagagagggcttctcgccgtcgcttgtgccgcacttctcagtctcaccgccatgctcggcttaacgctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.41

Weight (kDa)

11.78

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017925)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 124
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 56, 225, 243
AclWI GGATC 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 121
AjnI CCWGG 2 cut(s) 30, 77
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 106, 145, 232
BceAI ACGGC 2 cut(s) 152, 197
BciT130I CCWGG 2 cut(s) 32, 79
BcoDI GTCTC 1 cut(s) 242
BisI GCNGC 2 cut(s) 57, 225
BlsI GCNGC 2 cut(s) 58, 226
Bme1390I CCNGG 2 cut(s) 32, 79
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 32, 79
BmsI GCATC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 30
BseBI CCWGG 2 cut(s) 32, 79
BseDI CCNNGG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 51, 72, 81
BspACI CCGC 3 cut(s) 56, 225, 243
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 1 cut(s) 56
BspPI GGATC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 3 cut(s) 51, 72, 81
BssNI GRCGYC 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 32, 79
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 3 cut(s) 54, 75, 84
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 51, 72, 81
BstMWI GCNNNNNNNGC 3 cut(s) 62, 97, 224
BstNI CCWGG 2 cut(s) 32, 79
BstSCI CCNGG 2 cut(s) 30, 77
BstUI CGCG 1 cut(s) 56
BsuRI GGCC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 58
CseI GACGC 1 cut(s) 15
CviAII CATG 3 cut(s) 6, 70, 247
CviJI RGCY 4 cut(s) 59, 147, 205, 255
CviKI_1 RGCY 4 cut(s) 59, 147, 205, 255
DdeI CTNAG 1 cut(s) 233
DpnI GATC 3 cut(s) 53, 74, 83
DpnII GATC 3 cut(s) 51, 72, 81
EcoRII CCWGG 2 cut(s) 30, 77
FaeI CATG 3 cut(s) 9, 73, 250
FaiI YATR 3 cut(s) 7, 71, 248
FaqI GGGAC 1 cut(s) 13
FatI CATG 3 cut(s) 5, 69, 246
Fnu4HI GCNGC 2 cut(s) 57, 225
Fsp4HI GCNGC 2 cut(s) 57, 225
GluI GCNGC 2 cut(s) 57, 225
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 3 cut(s) 9, 73, 250
HpaII CCGG 1 cut(s) 111
HphI GGTGA 3 cut(s) 106, 145, 232
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 23, 160, 266
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 4 cut(s) 123, 126, 141, 218
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 97, 224
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 3 cut(s) 9, 73, 250
Kzo9I GATC 3 cut(s) 51, 72, 81
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 7 cut(s) 17, 44, 64, 77, 91, 124, 166
LweI GCATC 1 cut(s) 87
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 12
MalI GATC 3 cut(s) 53, 74, 83
MboI GATC 3 cut(s) 51, 72, 81
MnlI CCTC 3 cut(s) 158, 166, 194
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 32, 79
MvaI CCWGG 2 cut(s) 32, 79
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 62, 97, 224
NdeII GATC 3 cut(s) 51, 72, 81
NlaIII CATG 3 cut(s) 9, 73, 250
NmeAIII GCCGAG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PkrI GCNGC 2 cut(s) 58, 226
Psp6I CCWGG 2 cut(s) 30, 77
PspGI CCWGG 2 cut(s) 30, 77
PspPI GGNCC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 2 cut(s) 57, 225
Sau3AI GATC 3 cut(s) 51, 72, 81
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 32, 79
SetI ASST 3 cut(s) 107, 124, 158
SfaNI GCATC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 245
SsiI CCGC 3 cut(s) 56, 225, 243
StyD4I CCNGG 2 cut(s) 30, 77
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 124
TaqI TCGA 2 cut(s) 118, 136
TauI GCSGC 2 cut(s) 59, 227
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
ZraI GACGTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.