AT5G50335

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
20489033 .. 20489727
695 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G50335.1

Sequence Viewer

Length: 225 bp
ATGGTGTGCAGAGCAGAAGAAGCAATGAAGCAGAGAGGGATCATAAAGAGATGTAAAGAAGATGATCGTCATCAGAAGAAGAAGATGCAATCAATCACAAATTGCAACAAAGAAAAAAGTTGCAGATTCAAGCGAAGCACTAGTAATCTCGATAACGATGGAGCTTCCTCAGCCATCTTCCTCCTAGCTTGCATCGCCTGCTCATCCTTCTCTTATCATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.46

Weight (kDa)

9.35

Isoelectric Point (pI)

63.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50335
prunus_persica Prupe.5G156000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190871
rosa_roxburghii Rroxscaffold_3G00264240
rosa_rugosa Rorug06G0507600
rosa_wichuraiana Rw7G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 47
AgsI TTSAA 1 cut(s) 130
AhlI ACTAGT 1 cut(s) 140
AluBI AGCT 2 cut(s) 164, 188
AluI AGCT 2 cut(s) 164, 188
AlwI GGATC 1 cut(s) 47
BbvCI CCTCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 152, 182
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 2 cut(s) 141, 185
BmsI GCATC 2 cut(s) 75, 201
Bpu10I CCTNAGC 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 69
BseGI GGATG 1 cut(s) 203
BseJI GATNNNNATC 1 cut(s) 69
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 28
Bsp143I GATC 2 cut(s) 39, 64
BspCNI CTCAG 1 cut(s) 182
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 30
BssMI GATC 2 cut(s) 39, 64
BstAPI GCANNNNNTGC 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 190, 199
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 203
BstKTI GATC 2 cut(s) 42, 67
BstMBI GATC 2 cut(s) 39, 64
BstMWI GCNNNNNNNGC 4 cut(s) 20, 170, 194, 198
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 190, 199
CviJI RGCY 3 cut(s) 164, 173, 188
CviKI_1 RGCY 3 cut(s) 164, 173, 188
DdeI CTNAG 1 cut(s) 169
DpnI GATC 2 cut(s) 41, 66
DpnII GATC 2 cut(s) 39, 64
FaiI YATR 1 cut(s) 44
FokI GGATG 1 cut(s) 190
FspBI CTAG 2 cut(s) 141, 185
FspEI CC 9 cut(s) 21, 22, 144, 181, 187, 194, 197, 211, 220
HinfI GANTC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 5 cut(s) 9, 88, 105, 123, 192
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 170, 194, 198
HpyF3I CTNAG 1 cut(s) 169
Kzo9I GATC 2 cut(s) 39, 64
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 1 cut(s) 211
LweI GCATC 2 cut(s) 75, 201
MaeI CTAG 2 cut(s) 141, 185
MalI GATC 2 cut(s) 41, 66
MboI GATC 2 cut(s) 39, 64
MboII GAAGA 6 cut(s) 29, 71, 88, 91, 94, 169
MluCI AATT 1 cut(s) 100
MnlI CCTC 3 cut(s) 29, 178, 191
MwoI GCNNNNNNNGC 4 cut(s) 20, 170, 194, 198
NdeII GATC 2 cut(s) 39, 64
PfeI GAWTC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 39, 64
SetI ASST 2 cut(s) 166, 190
SfaNI GCATC 2 cut(s) 75, 201
SgeI CNNG 6 cut(s) 142, 153, 161, 197, 201, 210
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 141, 185
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 100
TfiI GAWTC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 41
XspI CTAG 2 cut(s) 141, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.