Rorug06G0507600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0020197
Physical Location & Seq
Reverse (-)
62238191 .. 62240425
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0507600.1

Sequence Viewer

Length: 1443 bp
ATGTTCGTATTATTCCTCCAACGAGGTTCGTATTATTCCTCCAACGATCGAGGTTATTACTATGGGTTCTACAACACCTCAGCAGGACAAAACCCTGACAAAGCCCACGCAATTGGGCTCTGTAGAGGCGATCTTAAGCCCGATCCCTGCAGAAGCTGCCTGGATGGGGTTAGAAATCTTCTCATAGAGGCGTGTCCCTCTGAGAAAGAGGCGATTGGGTGGTACGAGAACTGCATGCTTCGCTTCTCAAACCGCTCCCTTCACGGCTCCACGGAAGTCGTTCCTGCCTTCTCTCTGTGGAAGGCAGAGAGCCTATTGTCCGGTGATGACGTGGCTGCCGGGTTCAACCGGAAGCTCAAGAACTTACTGAAAACCCTAAGGACTGAGGCCGCAGGCGGCGGCAATCTTAGAAAGTTTGCAGCAGGAAGTGCCAGCGTTAGGGTTGCTCGGAATTCCAATCAATTGACGATATATGCGCTTGTCCAATGCACACCCGATTTGTCGGAGACAGACTGCAAAAGGTGCTTGCTTGAGGCCTTTTGGTATATACCAAGATGCTGTGATGGGAAGGATACGGGGAGGCTTGTTATACCTAGCTGCAATTTGAGGTTTGAGCTGTCTCTCTTCTTTGACAAAGCTGCTACTGTGCTGCCTTTGCCTGTCTCTCATAGCTCTCCTCCTCCAATCTCTGCCAATACCACACGTATTTCGCAAGGAATATTGAAAAACCAAAAACTTTGGAATGTGATGATTCTCGTTATGGCAATCGTTGGTGGTGTTTTGTCGCTATTCATGTGCTATTGTTTGAGAGTACTCGGAGTAGATAGGATCTCAAGTGAACAAATTACAACTGCAAGTTCTTCGGTAGTTGAATCACCTAAAACGACGTCCTCGGTATATGTCACTCAGATTAGTTATGACGATGTCATATTGGCCACGGGTGGCTTTGCTGATAAACGGGGACAAGGCGGCTTTGGTCCTGTTTTCAAGGGTCTTTTGAACGGCCAAGATATAGCCGTGAAAATACTCTCGACGGAATACGAACAAGGAGATGTACACTTTTCAACTGAAGTCGCAGTTTTGGGCAACCTTCGACATGGCAATTTAGTCAAGCTCCTGCATTTCAGTGTGGAAGGAGATGAAAGGGTTCTTGTATATGAGTATGTCCCAAATCAAAGTCTTGATCGCTTCATATTTGATCAAAACGAGGGCGAAGGTTTGGATTGGGATAGACGCTACATCATCATAGTTGGCACTGCACGAGGACTCTGTTACCTTCATCATAATGCTTCTCCTAAATTTTTTCATCGTGATGTAAAAACCAGCAACATATTACTAGATGCAATATGGAATCCCAACATATTCCTGCTTGTTCACCTAACTGTATACAGCTGTTTATACAGTTGTTGGTTACTAATTTACAATATAGTGAATGTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

480

Amino Acids

53.37

Weight (kDa)

7.83

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 18 - 85 7.7e-17 Salt stress response/antifungal
Stress-antifung PF01657 114 - 205 2.1e-11 Salt stress response/antifungal
PK_Tyr_Ser-Thr PF07714 320 - 447 8.8e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 321 - 447 9.8e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50335
prunus_persica Prupe.5G156000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190871
rosa_roxburghii Rroxscaffold_3G00264240
rosa_rugosa Rorug06G0507600
rosa_wichuraiana Rw7G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 890
AccBSI CCGCTC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 1386
AciI CCGC 5 cut(s) 253, 390, 396, 399, 969
AclWI GGATC 2 cut(s) 137, 836
AcoI YGGCCR 2 cut(s) 933, 1003
AcsI RAATTY 2 cut(s) 451, 1298
AcuI CTGAAG 1 cut(s) 1089
AcyI GRCGYC 1 cut(s) 887
AfaI GTAC 3 cut(s) 224, 813, 1056
AfiI CCNNNNNNNGG 2 cut(s) 166, 438
AflII CTTAAG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 701
AgsI TTSAA 6 cut(s) 346, 724, 872, 988, 1000, 1065
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 8 cut(s) 156, 355, 597, 616, 638, 672, 1114, 1392
AluI AGCT 8 cut(s) 156, 355, 597, 616, 638, 672, 1114, 1392
Alw26I GTCTC 3 cut(s) 500, 624, 667
AlwI GGATC 2 cut(s) 137, 836
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 4 cut(s) 387, 534, 933, 1003
ApeKI GCWGC 6 cut(s) 156, 335, 419, 597, 638, 649
ApoI RAATTY 2 cut(s) 451, 1298
Asp700I GAANNNNTTC 2 cut(s) 279, 1146
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 977
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 3 cut(s) 335, 867, 1367
AvaII GGWCC 1 cut(s) 977
AxyI CCTNAGG 1 cut(s) 377
BalI TGGCCA 1 cut(s) 935
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 1260
BbvCI CCTCAGC 1 cut(s) 79
BbvI GCAGC 6 cut(s) 143, 322, 431, 584, 625, 636
BccI CCATC 2 cut(s) 158, 557
BceAI ACGGC 3 cut(s) 280, 1001, 1018
BcgI CGANNNNNNTGC 2 cut(s) 843, 877
BciT130I CCWGG 1 cut(s) 161
BciVI GTATCC 1 cut(s) 565
BclI TGATCA 1 cut(s) 1198
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 500, 624, 667
BfaI CTAG 2 cut(s) 594, 1337
BfmI CTRYAG 2 cut(s) 121, 148
BfrI CTTAAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 565
BmcAI AGTACT 1 cut(s) 813
Bme1390I CCNGG 2 cut(s) 161, 340
Bme18I GGWCC 1 cut(s) 977
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 977
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 161, 340
BmsI GCATC 2 cut(s) 545, 1330
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 3 cut(s) 341, 551, 817
BpuMI CCSGG 1 cut(s) 340
BsaAI YACGTR 1 cut(s) 704
BsaHI GRCGYC 1 cut(s) 887
BsaJI CCNNGG 3 cut(s) 270, 891, 936
BsaWI WCCGGW 2 cut(s) 320, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 438
Bse21I CCTNAGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 3 cut(s) 270, 891, 936
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 166, 438
BseMII CTCAG 4 cut(s) 93, 192, 375, 920
BseRI GAGGAG 2 cut(s) 666, 669
BseXI GCAGC 6 cut(s) 143, 322, 431, 584, 625, 636
BsgI GTGCAG 1 cut(s) 1242
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 4 cut(s) 389, 536, 935, 1005
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 3 cut(s) 321, 339, 349
BslFI GGGAC 3 cut(s) 180, 975, 1151
BslI CCNNNNNNNGG 2 cut(s) 166, 438
BsmAI GTCTC 3 cut(s) 500, 624, 667
BsmFI GGGAC 3 cut(s) 180, 975, 1151
BsnI GGCC 4 cut(s) 389, 536, 935, 1005
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 1054
Bsp143I GATC 6 cut(s) 46, 130, 142, 828, 1183, 1198
BspACI CCGC 5 cut(s) 253, 390, 396, 399, 969
BspANI GGCC 4 cut(s) 389, 536, 935, 1005
BspCNI CTCAG 4 cut(s) 92, 193, 376, 919
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 152
BspPI GGATC 2 cut(s) 137, 836
BspTI CTTAAG 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 255
BsrGI TGTACA 1 cut(s) 1054
BssECI CCNNGG 3 cut(s) 270, 891, 936
BssMI GATC 6 cut(s) 46, 130, 142, 828, 1183, 1198
BssNAI GTATAC 1 cut(s) 1387
BssNI GRCGYC 1 cut(s) 887
BssSI CACGAG 1 cut(s) 1260
Bst1107I GTATAC 1 cut(s) 1387
Bst2BI CACGAG 1 cut(s) 1260
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 646, 1384, 1403
Bst6I CTCTTC 1 cut(s) 629
BstACI GRCGYC 1 cut(s) 887
BstAFI CTTAAG 1 cut(s) 134
BstAPI GCANNNNNTGC 3 cut(s) 156, 428, 522
BstAUI TGTACA 1 cut(s) 1054
BstBAI YACGTR 1 cut(s) 704
BstC8I GCNNGC 4 cut(s) 236, 394, 433, 527
BstDEI CTNAG 6 cut(s) 79, 201, 377, 384, 407, 906
BstDSI CCRYGG 2 cut(s) 270, 936
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 6 cut(s) 49, 133, 145, 831, 1186, 1201
BstMAI GTCTC 3 cut(s) 500, 624, 667
BstMBI GATC 6 cut(s) 46, 130, 142, 828, 1183, 1198
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 5 cut(s) 156, 240, 428, 522, 655
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 159, 338
BstSFI CTRYAG 2 cut(s) 121, 148
BstV1I GCAGC 6 cut(s) 143, 322, 431, 584, 625, 636
BstX2I RGATCY 1 cut(s) 828
BstXI CCANNNNNNTGG 1 cut(s) 113
BstYI RGATCY 1 cut(s) 828
BstZ17I GTATAC 1 cut(s) 1387
Bsu36I CCTNAGG 1 cut(s) 377
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 4 cut(s) 389, 536, 935, 1005
BtgI CCRYGG 2 cut(s) 270, 936
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 1254
BtsIMutI CAGTG 2 cut(s) 1132, 1254
Cac8I GCNNGC 4 cut(s) 236, 394, 433, 527
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 977
CseI GACGC 1 cut(s) 1242
Csp6I GTAC 3 cut(s) 223, 812, 1055
CviAII CATG 3 cut(s) 235, 793, 1097
CviQI GTAC 3 cut(s) 223, 812, 1055
DdeI CTNAG 6 cut(s) 79, 201, 377, 384, 407, 906
DpnI GATC 6 cut(s) 48, 132, 144, 830, 1185, 1200
DpnII GATC 6 cut(s) 46, 130, 142, 828, 1183, 1198
EaeI YGGCCR 2 cut(s) 933, 1003
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Eco147I AGGCCT 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 977
Eco57I CTGAAG 1 cut(s) 1089
Eco81I CCTNAGG 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 3 cut(s) 238, 796, 1100
FaqI GGGAC 3 cut(s) 180, 975, 1151
FatI CATG 3 cut(s) 234, 792, 1096
FbaI TGATCA 1 cut(s) 1198
FblI GTMKAC 1 cut(s) 1386
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 120
FspBI CTAG 2 cut(s) 594, 1337
GlaI GCGC 1 cut(s) 477
HaeIII GGCC 4 cut(s) 389, 536, 935, 1005
HapII CCGG 3 cut(s) 321, 339, 349
HgaI GACGC 1 cut(s) 1242
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 887
Hin1II CATG 3 cut(s) 238, 796, 1100
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HinfI GANTC 4 cut(s) 751, 872, 1266, 1351
HpaII CCGG 3 cut(s) 321, 339, 349
HphI GGTGA 3 cut(s) 335, 867, 1367
Hpy166II GTNNAC 4 cut(s) 839, 1057, 1375, 1387
Hpy188I TCNGA 5 cut(s) 202, 450, 505, 818, 909
Hpy188III TCNNGA 4 cut(s) 358, 1030, 1181, 1310
Hpy8I GTNNAC 4 cut(s) 839, 1057, 1375, 1387
Hpy99I CGWCG 2 cut(s) 889, 1036
HpyAV CCTTC 8 cut(s) 269, 295, 298, 562, 1100, 1127, 1208, 1286
HpyCH4III ACNGT 3 cut(s) 646, 1384, 1403
HpyCH4IV ACGT 3 cut(s) 330, 703, 887
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 240, 428, 522, 655
HpyF3I CTNAG 6 cut(s) 79, 201, 377, 384, 407, 906
HpySE526I ACGT 3 cut(s) 330, 703, 887
Hsp92I GRCGYC 1 cut(s) 887
Hsp92II CATG 3 cut(s) 238, 796, 1100
HspAI GCGC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 1198
Kzo9I GATC 6 cut(s) 46, 130, 142, 828, 1183, 1198
LmnI GCTCC 3 cut(s) 260, 272, 1119
Lsp1109I GCAGC 6 cut(s) 143, 322, 431, 584, 625, 636
LweI GCATC 2 cut(s) 545, 1330
MaeI CTAG 2 cut(s) 594, 1337
MaeII ACGT 3 cut(s) 330, 703, 887
MaeIII GTNAC 3 cut(s) 901, 1271, 1410
MalI GATC 6 cut(s) 48, 132, 144, 830, 1185, 1200
MbiI CCGCTC 1 cut(s) 255
MboI GATC 6 cut(s) 46, 130, 142, 828, 1183, 1198
MboII GAAGA 3 cut(s) 170, 616, 852
MfeI CAATTG 2 cut(s) 111, 461
MflI RGATCY 1 cut(s) 828
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 8 cut(s) 111, 451, 461, 601, 843, 1102, 1298, 1416
MluNI TGGCCA 1 cut(s) 935
MlyI GAGTC 1 cut(s) 1260
MmeI TCCRAC 3 cut(s) 43, 66, 483
Mox20I TGGCCA 1 cut(s) 935
MroXI GAANNNNTTC 2 cut(s) 279, 1146
MscI TGGCCA 1 cut(s) 935
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 3 cut(s) 1125, 1284, 1311
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 1392
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 3 cut(s) 321, 339, 349
MspR9I CCNGG 2 cut(s) 161, 340
MunI CAATTG 2 cut(s) 111, 461
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 5 cut(s) 156, 240, 428, 522, 655
NciI CCSGG 1 cut(s) 340
NdeII GATC 6 cut(s) 46, 130, 142, 828, 1183, 1198
NlaIII CATG 3 cut(s) 238, 796, 1100
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 901
NspI RCATGY 1 cut(s) 238
PaeI GCATGC 1 cut(s) 238
PceI AGGCCT 1 cut(s) 536
PdmI GAANNNNTTC 2 cut(s) 279, 1146
PfeI GAWTC 3 cut(s) 751, 872, 1351
PflFI GACNNNGTC 1 cut(s) 923
Ple19I CGATCG 1 cut(s) 49
PleI GAGTC 1 cut(s) 1260
PpsI GAGTC 1 cut(s) 1260
Ppu21I YACGTR 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 977
PstI CTGCAG 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 828
PsyI GACNNNGTC 1 cut(s) 923
PvuI CGATCG 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 1392
RsaI GTAC 3 cut(s) 224, 813, 1056
RsaNI GTAC 3 cut(s) 223, 812, 1055
RseI CAYNNNNRTG 3 cut(s) 1125, 1284, 1311
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 6 cut(s) 46, 130, 142, 828, 1183, 1198
Sau96I GGNCC 1 cut(s) 977
ScaI AGTACT 1 cut(s) 813
SchI GAGTC 1 cut(s) 1260
ScrFI CCNGG 2 cut(s) 161, 340
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 2 cut(s) 545, 1330
SfcI CTRYAG 2 cut(s) 121, 148
SinI GGWCC 1 cut(s) 977
SmiMI CAYNNNNRTG 3 cut(s) 1125, 1284, 1311
SmlI CTYRAG 4 cut(s) 134, 356, 530, 832
SmoI CTYRAG 4 cut(s) 134, 356, 530, 832
SphI GCATGC 1 cut(s) 238
Sse9I AATT 8 cut(s) 111, 451, 461, 601, 843, 1102, 1298, 1416
SseBI AGGCCT 1 cut(s) 536
SsiI CCGC 5 cut(s) 253, 390, 396, 399, 969
SspI AATATT 1 cut(s) 720
SspMI CTAG 2 cut(s) 594, 1337
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 159, 338
TaaI ACNGT 3 cut(s) 646, 1384, 1403
TaiI ACGT 3 cut(s) 333, 706, 890
TaqI TCGA 3 cut(s) 49, 1031, 1093
TasI AATT 8 cut(s) 111, 451, 461, 601, 843, 1102, 1298, 1416
TatI WGTACW 2 cut(s) 811, 1054
TauI GCSGC 4 cut(s) 392, 399, 402, 972
TfiI GAWTC 3 cut(s) 751, 872, 1351
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 1132, 1261
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 6 cut(s) 156, 335, 419, 597, 638, 649
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 5 cut(s) 781, 1155, 1180, 1268, 1295
TspGWI ACGGA 2 cut(s) 287, 1049
TspRI CASTG 2 cut(s) 1132, 1261
Tth111I GACNNNGTC 1 cut(s) 923
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 977
XapI RAATTY 2 cut(s) 451, 1298
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 1386
XmnI GAANNNNTTC 2 cut(s) 279, 1146
XspI CTAG 2 cut(s) 594, 1337
ZraI GACGTC 1 cut(s) 888
ZrmI AGTACT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.