Rroxscaffold_3G00264240

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
57958231 .. 57958836
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264240.1

Sequence Viewer

Length: 201 bp
ATGGTTTCTAAAGTGGAAGAAGGAATGAAGAGAAGGCAAGAACAGCAGCAGCAGCAGAAGCAGATACAGTACAACTGCAATATCAACAAAGCAAAGGTCTGCAAATTCAAGAGGAGCAGCTCCAATCTCGAAGAGGACGGCGCTTCCACCGCCATTCTCTTGCTGGCTTGTATTGTCTGCACTCCCTCCTCGTATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.48

Weight (kDa)

9.05

Isoelectric Point (pI)

101.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50335
prunus_persica Prupe.5G156000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190871
rosa_roxburghii Rroxscaffold_3G00264240
rosa_rugosa Rorug06G0507600
rosa_wichuraiana Rw7G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
ApeKI GCWGC 4 cut(s) 46, 49, 52, 117
ApoI RAATTY 1 cut(s) 104
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspLEI GCGC 1 cut(s) 143
BbvI GCAGC 4 cut(s) 58, 61, 64, 129
BceAI ACGGC 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 4 cut(s) 47, 50, 53, 118
BlsI GCNGC 4 cut(s) 48, 51, 54, 119
BseRI GAGGAG 2 cut(s) 127, 178
BseXI GCAGC 4 cut(s) 58, 61, 64, 129
BsgI GTGCAG 1 cut(s) 163
BspACI CCGC 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 23, 126
BstC8I GCNNGC 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstMWI GCNNNNNNNGC 4 cut(s) 43, 52, 58, 149
BstV1I GCAGC 4 cut(s) 58, 61, 64, 129
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 70
CviJI RGCY 2 cut(s) 120, 167
CviKI_1 RGCY 2 cut(s) 120, 167
CviQI GTAC 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 23, 126
EarI CTCTTC 2 cut(s) 23, 126
FaiI YATR 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 47, 50, 53, 118
Fsp4HI GCNGC 4 cut(s) 47, 50, 53, 118
GlaI GCGC 1 cut(s) 142
GluI GCNGC 4 cut(s) 47, 50, 53, 118
HaeII RGCGCY 1 cut(s) 144
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
Hpy188III TCNNGA 2 cut(s) 109, 128
HpyAV CCTTC 2 cut(s) 14, 27
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 78, 102, 180
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 52, 58, 149
HspAI GCGC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 114, 125
LpnPI CCDG 1 cut(s) 149
Lsp1109I GCAGC 4 cut(s) 58, 61, 64, 129
MboII GAAGA 3 cut(s) 29, 40, 143
MluCI AATT 1 cut(s) 104
MnlI CCTC 4 cut(s) 105, 127, 196, 199
MwoI GCNNNNNNNGC 4 cut(s) 43, 52, 58, 149
PkrI GCNGC 4 cut(s) 48, 51, 54, 119
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SatI GCNGC 4 cut(s) 47, 50, 53, 118
SetI ASST 2 cut(s) 99, 122
SgeI CNNG 6 cut(s) 50, 121, 140, 172, 176, 180
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 150
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 104
TatI WGTACW 1 cut(s) 69
TseI GCWGC 4 cut(s) 46, 49, 52, 117
TspDTI ATGAA 1 cut(s) 41
XapI RAATTY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.