Prupe.5G156000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
13927891 .. 13928440
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G156000.1

Sequence Viewer

Length: 219 bp
ATGGTGTCTAAAGTGGAAGAAGCAATGAAAAGAAGGCAGCAACAACAAGAACAGAAGCAGCAATATCATCACCAGCAGCAGCAGCAGCAGAAGCAAATACAGTGTAACAAAAGCAAAGTTTGCAAATTCAAGAGGAGCACCTCCAATGTCGAAGAAGATGGAGCTTCCACTGCCATTCTCTTGCTTGCTTGCATCGTCTGCGCTCCTTCGTATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.35

Weight (kDa)

9.24

Isoelectric Point (pI)

95.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50335
prunus_persica Prupe.5G156000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190871
rosa_roxburghii Rroxscaffold_3G00264240
rosa_rugosa Rorug06G0507600
rosa_wichuraiana Rw7G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 125
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 140
ApeKI GCWGC 6 cut(s) 37, 58, 76, 79, 82, 85
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 6 cut(s) 49, 70, 88, 91, 94, 97
BccI CCATC 1 cut(s) 152
BisI GCNGC 6 cut(s) 38, 59, 77, 80, 83, 86
BlsI GCNGC 6 cut(s) 39, 60, 78, 81, 84, 87
BmsI GCATC 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 6 cut(s) 49, 70, 88, 91, 94, 97
BsiHKAI GWGCWC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 102
BstAPI GCANNNNNTGC 2 cut(s) 120, 198
BstC8I GCNNGC 2 cut(s) 186, 190
BstHHI GCGC 1 cut(s) 203
BstMWI GCNNNNNNNGC 6 cut(s) 82, 85, 91, 120, 170, 198
BstV1I GCAGC 6 cut(s) 49, 70, 88, 91, 94, 97
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 107, 168
Cac8I GCNNGC 2 cut(s) 186, 190
CfoI GCGC 1 cut(s) 203
CviJI RGCY 1 cut(s) 164
CviKI_1 RGCY 1 cut(s) 164
FaiI YATR 1 cut(s) 217
Fnu4HI GCNGC 6 cut(s) 38, 59, 77, 80, 83, 86
Fsp4HI GCNGC 6 cut(s) 38, 59, 77, 80, 83, 86
FspEI CC 8 cut(s) 19, 86, 118, 144, 154, 157, 181, 187
GlaI GCGC 1 cut(s) 202
GluI GCNGC 6 cut(s) 38, 59, 77, 80, 83, 86
HhaI GCGC 1 cut(s) 203
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HphI GGTGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 27, 216
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 123, 192
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 85, 91, 120, 170, 198
HspAI GCGC 1 cut(s) 201
LmnI GCTCC 3 cut(s) 135, 161, 208
LpnPI CCDG 1 cut(s) 86
Lsp1109I GCAGC 6 cut(s) 49, 70, 88, 91, 94, 97
LweI GCATC 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 3 cut(s) 29, 164, 167
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 1 cut(s) 125
MnlI CCTC 2 cut(s) 126, 151
MwoI GCNNNNNNNGC 6 cut(s) 82, 85, 91, 120, 170, 198
PkrI GCNGC 6 cut(s) 39, 60, 78, 81, 84, 87
SatI GCNGC 6 cut(s) 38, 59, 77, 80, 83, 86
SduI GDGCHC 1 cut(s) 140
SetI ASST 2 cut(s) 143, 166
SfaNI GCATC 1 cut(s) 201
SgeI CNNG 6 cut(s) 59, 85, 142, 193, 197, 201
Sse9I AATT 1 cut(s) 125
TaaI ACNGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 125
TscAI CASTG 2 cut(s) 107, 175
TseI GCWGC 6 cut(s) 37, 58, 76, 79, 82, 85
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 2 cut(s) 107, 175
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.