Rw7G009970

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
9219978 .. 9220443
466 bp
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UTR
Exon/CDS
Intron
Rw7G009970.1

Sequence Viewer

Length: 210 bp
ATGGTTTCTAAAGTGGAAGAAGGAATGAAGAGAAGGCAAGAACAGCAGCAGCAGCAGCAGCAGCAGAAGCAGATACAGTACAACTGCAATATCAACAAAGCAAAGGTCTGCAAATTCAAGAGGAGCAGCTCCAATCTCGAAGAGGACGGCGCTTCCACCGCCATTCTCTTGCTGGCTTGTATTGTCTGCACTCCCTCCTCGTATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.86

Weight (kDa)

9.05

Isoelectric Point (pI)

105.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50335
prunus_persica Prupe.5G156000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190871
rosa_roxburghii Rroxscaffold_3G00264240
rosa_rugosa Rorug06G0507600
rosa_wichuraiana Rw7G009970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 113
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
ApeKI GCWGC 7 cut(s) 46, 49, 52, 55, 58, 61, 126
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspLEI GCGC 1 cut(s) 152
BbvI GCAGC 7 cut(s) 58, 61, 64, 67, 70, 73, 138
BceAI ACGGC 1 cut(s) 163
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 7 cut(s) 47, 50, 53, 56, 59, 62, 127
BlsI GCNGC 7 cut(s) 48, 51, 54, 57, 60, 63, 128
BseRI GAGGAG 2 cut(s) 136, 187
BseXI GCAGC 7 cut(s) 58, 61, 64, 67, 70, 73, 138
BsgI GTGCAG 1 cut(s) 172
BspACI CCGC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 23, 135
BstC8I GCNNGC 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstMWI GCNNNNNNNGC 7 cut(s) 43, 52, 55, 58, 61, 67, 158
BstV1I GCAGC 7 cut(s) 58, 61, 64, 67, 70, 73, 138
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 2 cut(s) 129, 176
CviKI_1 RGCY 2 cut(s) 129, 176
CviQI GTAC 1 cut(s) 79
Eam1104I CTCTTC 2 cut(s) 23, 135
EarI CTCTTC 2 cut(s) 23, 135
FaiI YATR 1 cut(s) 208
Fnu4HI GCNGC 7 cut(s) 47, 50, 53, 56, 59, 62, 127
Fsp4HI GCNGC 7 cut(s) 47, 50, 53, 56, 59, 62, 127
GlaI GCGC 1 cut(s) 151
GluI GCNGC 7 cut(s) 47, 50, 53, 56, 59, 62, 127
HaeII RGCGCY 1 cut(s) 153
HhaI GCGC 1 cut(s) 152
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 118, 137
HpyAV CCTTC 2 cut(s) 14, 27
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 87, 111, 189
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 52, 55, 58, 61, 67, 158
HspAI GCGC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 123, 134
LpnPI CCDG 1 cut(s) 158
Lsp1109I GCAGC 7 cut(s) 58, 61, 64, 67, 70, 73, 138
MboII GAAGA 3 cut(s) 29, 40, 152
MluCI AATT 1 cut(s) 113
MnlI CCTC 4 cut(s) 114, 136, 205, 208
MwoI GCNNNNNNNGC 7 cut(s) 43, 52, 55, 58, 61, 67, 158
PkrI GCNGC 7 cut(s) 48, 51, 54, 57, 60, 63, 128
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SatI GCNGC 7 cut(s) 47, 50, 53, 56, 59, 62, 127
SetI ASST 2 cut(s) 108, 131
SgeI CNNG 6 cut(s) 50, 130, 149, 181, 185, 189
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 159
TaaI ACNGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 78
TseI GCWGC 7 cut(s) 46, 49, 52, 55, 58, 61, 126
TspDTI ATGAA 1 cut(s) 41
XapI RAATTY 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.