AT5G51550

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014954
Physical Location & Seq
Reverse (-)
20939363 .. 20940895
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51550.1

Sequence Viewer

Length: 1014 bp
ATGCATTCACTTCCGGTGAATCTCGTCCTCACCGTACTTACGGTGTTCCTAACATCACCGGCGCAAGTTATCGGATACCGTCCATATCCACCAAAAACCAACGGCTCCGATCAAATCTTCGACGCTTCAAAAAAATTCGAAGGCTCATCGAATCTCGTCCGCCTCCGTTACCACATGGGTCCAGTCTTAACCAACAACATCACCGTTCACCCAATCTGGTACGGCACGTGGCAAAAATCCCAGAAGAAAATCATCCGTGAGTTCATTAACTCAATCTCAGCCGTTGGATCTAAACACCCTTCAGTCTCCGGTTGGTGGAAAACCGTACAGCTTTACACTGACCAAACTGGATCTAACATTACCGGTACGGTTCGTCTCGGTGAAGAGAAAAACGACCGGTTTTATTCTCATGGTAAATCACTTACCCGGTTATCGATTCAATCCGTGATAAAATCCGCCGTCACTTCTAGGTCTCGCCCGTTGCCGGTTAATCCCAAAAGCGGTTTATATCTTCTCCTCACCGCCGATGATGTCTACGTGCAAGATTTTTGCGGCCAGGTTTGTGGATTTCACTATTTCACGTTTCCGTCGATTGTTGGATTCACGTTACCGTACGCTTGGGTTGGAAACTCGGCGAAGCTTTGTCCCGGAGTTTGTGCTTATCCGTTCGCCGTACCGGCGTTTATACCGGGATTAAAACCGGTTAAATCGCCTAACGGAGATGTTGGAGTAGATGGGATGATAAGTGTGATAGCTCACGAGATTGCTGAGCTGGCGACGAATCCGTTGGTTAATGCTTGGTACGCAGGACCCGACCCGGTAGCTCCGGTTGAGATAGCGGATCTTTGTGAGGGTATTTATGGAACAGGAGGTGGTGGTTCGTACACAGGACAGATGTTGAACGATCATAGTGGTGCCACGTATAATGTTAATGGGATCCGACGGCGGTATTTGATCCAGTGGTTATGGAGCCACGTTGTTAGTTACTGTACCGGACCCAATGCGCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009628 GO:0030054 GO:0030312 GO:0044464 GO:0050896 GO:0055044 GO:0071944 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

337

Amino Acids

36.85

Weight (kDa)

8.9

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 55 - 332 1e-100 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014954)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51550
fragaria_vesca FvH4_7g27970
malus_domestica MD01G1184600.v1.1
prunus_persica Prupe.2G280800_v2.0.a1
pyrus_communis pycom01g19620 pycom07g22950
rosa_chinensis RchiOBHm_Chr1g0374921
rosa_laevigata RLG00000026706
rosa_multiflora Rmu_sc0003145.1_g000010
rosa_roxburghii Rroxscaffold_4G00283170
rosa_rugosa Rorug01G0386000
rosa_samantha Rh1AG397500 Rh1BG361400 Rh1CG375000 Rh1DG392400
rosa_wichuraiana Rw1G035250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 914
AccI GTMKAC 1 cut(s) 534
AciI CCGC 7 cut(s) 160, 456, 501, 522, 552, 839, 946
AclWI GGATC 6 cut(s) 295, 358, 849, 931, 944, 949
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 285
AcvI CACGTG 1 cut(s) 228
AfaI GTAC 9 cut(s) 36, 221, 327, 367, 614, 675, 803, 884, 991
AfiI CCNNNNNNNGG 3 cut(s) 315, 484, 500
AgeI ACCGGT 3 cut(s) 362, 396, 700
AgsI TTSAA 3 cut(s) 129, 440, 901
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 5 cut(s) 331, 640, 755, 772, 824
AluI AGCT 5 cut(s) 331, 640, 755, 772, 824
Alw26I GTCTC 3 cut(s) 310, 380, 477
AlwI GGATC 6 cut(s) 295, 358, 849, 931, 944, 949
AoxI GGCC 1 cut(s) 553
ApoI RAATTY 1 cut(s) 134
AsiGI ACCGGT 3 cut(s) 362, 396, 700
AspLEI GCGC 2 cut(s) 64, 1006
AspS9I GGNCC 3 cut(s) 179, 809, 995
AsuC2I CCSGG 4 cut(s) 427, 648, 690, 818
AsuHPI GGTGA 7 cut(s) 22, 28, 48, 193, 200, 392, 511
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 3 cut(s) 179, 809, 995
BamHI GGATCC 1 cut(s) 936
BanI GGYRCC 1 cut(s) 914
BauI CACGAG 1 cut(s) 758
BbrPI CACGTG 1 cut(s) 228
BccI CCATC 1 cut(s) 728
BceAI ACGGC 6 cut(s) 118, 238, 266, 443, 656, 959
BciT130I CCWGG 1 cut(s) 557
BciVI GTATCC 1 cut(s) 68
BcnI CCSGG 4 cut(s) 427, 648, 690, 818
BcoDI GTCTC 3 cut(s) 310, 380, 477
BfaI CTAG 1 cut(s) 468
BfuI GTATCC 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 1 cut(s) 553
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 554
Bme1390I CCNGG 5 cut(s) 427, 557, 648, 690, 818
Bme18I GGWCC 3 cut(s) 179, 809, 995
BmgT120I GGNCC 3 cut(s) 179, 809, 995
BmiI GGNNCC 7 cut(s) 106, 180, 811, 916, 938, 971, 997
BmrFI CCNGG 5 cut(s) 427, 557, 648, 690, 818
Bpu1102I GCTNAGC 1 cut(s) 768
Bpu14I TTCGAA 1 cut(s) 138
BpuMI CCSGG 4 cut(s) 427, 648, 690, 818
Bsa29I ATCGAT 1 cut(s) 434
BsaAI YACGTR 3 cut(s) 228, 538, 921
BsaI GGTCTC 1 cut(s) 477
BsaWI WCCGGW 7 cut(s) 13, 308, 362, 396, 700, 826, 992
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 484, 500
Bse118I RCCGGY 6 cut(s) 58, 362, 396, 484, 676, 700
Bse1I ACTGG 3 cut(s) 182, 352, 958
BseBI CCWGG 1 cut(s) 557
BseCI ATCGAT 1 cut(s) 434
BseGI GGATG 2 cut(s) 252, 744
BseLI CCNNNNNNNGG 3 cut(s) 315, 484, 500
BseMII CTCAG 2 cut(s) 291, 759
BseNI ACTGG 3 cut(s) 182, 352, 958
BseRI GAGGAG 1 cut(s) 506
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 1 cut(s) 555
BshNI GGYRCC 1 cut(s) 914
BshTI ACCGGT 3 cut(s) 362, 396, 700
BshVI ATCGAT 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 397
BsiWI CGTACG 1 cut(s) 612
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 3 cut(s) 315, 484, 500
BsmAI GTCTC 3 cut(s) 310, 380, 477
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 630
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 555
Bso31I GGTCTC 1 cut(s) 477
Bsp119I TTCGAA 1 cut(s) 138
Bsp143I GATC 7 cut(s) 109, 287, 350, 841, 904, 936, 954
Bsp1720I GCTNAGC 1 cut(s) 768
BspACI CCGC 7 cut(s) 160, 456, 501, 522, 552, 839, 946
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 2 cut(s) 290, 760
BspDI ATCGAT 1 cut(s) 434
BspLI GGNNCC 7 cut(s) 106, 180, 811, 916, 938, 971, 997
BspPI GGATC 6 cut(s) 295, 358, 849, 931, 944, 949
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 914
BspTNI GGTCTC 1 cut(s) 477
BsrFI RCCGGY 6 cut(s) 58, 362, 396, 484, 676, 700
BsrI ACTGG 3 cut(s) 182, 352, 958
BssAI RCCGGY 6 cut(s) 58, 362, 396, 484, 676, 700
BssMI GATC 7 cut(s) 109, 287, 350, 841, 904, 936, 954
BssSI CACGAG 1 cut(s) 758
Bst2BI CACGAG 1 cut(s) 758
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 8 cut(s) 34, 43, 80, 205, 325, 370, 612, 989
Bst6I CTCTTC 1 cut(s) 378
BstBAI YACGTR 3 cut(s) 228, 538, 921
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 2 cut(s) 277, 768
BstF5I GGATG 2 cut(s) 252, 744
BstHHI GCGC 2 cut(s) 64, 1006
BstKTI GATC 7 cut(s) 112, 290, 353, 844, 907, 939, 957
BstMAI GTCTC 3 cut(s) 310, 380, 477
BstMBI GATC 7 cut(s) 109, 287, 350, 841, 904, 936, 954
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 3 cut(s) 677, 773, 803
BstNI CCWGG 1 cut(s) 557
BstSCI CCNGG 5 cut(s) 425, 555, 646, 688, 816
BstX2I RGATCY 4 cut(s) 287, 350, 841, 936
BstXI CCANNNNNNTGG 1 cut(s) 563
BstYI RGATCY 4 cut(s) 287, 350, 841, 936
Bsu15I ATCGAT 1 cut(s) 434
BsuI GTATCC 1 cut(s) 68
BsuRI GGCC 1 cut(s) 555
BsuTUI ATCGAT 1 cut(s) 434
BtsCI GGATG 2 cut(s) 252, 744
BtsIMutI CAGTG 2 cut(s) 336, 965
Cac8I GCNNGC 1 cut(s) 774
CfoI GCGC 2 cut(s) 64, 1006
Cfr10I RCCGGY 6 cut(s) 58, 362, 396, 484, 676, 700
Cfr13I GGNCC 3 cut(s) 179, 809, 995
ClaI ATCGAT 1 cut(s) 434
CseI GACGC 1 cut(s) 131
Csp6I GTAC 9 cut(s) 35, 220, 326, 366, 613, 674, 802, 883, 990
CspAI ACCGGT 3 cut(s) 362, 396, 700
CviAII CATG 2 cut(s) 175, 410
CviQI GTAC 9 cut(s) 35, 220, 326, 366, 613, 674, 802, 883, 990
DdeI CTNAG 2 cut(s) 277, 768
DpnI GATC 7 cut(s) 111, 289, 352, 843, 906, 938, 956
DpnII GATC 7 cut(s) 109, 287, 350, 841, 904, 936, 954
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 2 cut(s) 149, 445
Eco31I GGTCTC 1 cut(s) 477
Eco47I GGWCC 3 cut(s) 179, 809, 995
Eco57I CTGAAG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 2 cut(s) 178, 413
FaiI YATR 9 cut(s) 85, 176, 411, 508, 686, 861, 909, 924, 967
FaqI GGGAC 1 cut(s) 630
FatI CATG 2 cut(s) 174, 409
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 1 cut(s) 553
FokI GGATG 2 cut(s) 239, 751
Fsp4HI GCNGC 1 cut(s) 553
FspBI CTAG 1 cut(s) 468
GlaI GCGC 2 cut(s) 63, 1005
GluI GCNGC 1 cut(s) 553
HaeIII GGCC 1 cut(s) 555
HgaI GACGC 1 cut(s) 131
HhaI GCGC 2 cut(s) 64, 1006
Hin1II CATG 2 cut(s) 178, 413
Hin6I GCGC 2 cut(s) 62, 1004
HinP1I GCGC 2 cut(s) 62, 1004
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 5 cut(s) 19, 151, 436, 600, 781
HphI GGTGA 7 cut(s) 22, 28, 48, 193, 200, 392, 511
Hpy166II GTNNAC 3 cut(s) 208, 535, 885
Hpy188I TCNGA 3 cut(s) 74, 109, 941
Hpy188III TCNNGA 1 cut(s) 758
Hpy8I GTNNAC 3 cut(s) 208, 535, 885
Hpy99I CGWCG 4 cut(s) 125, 592, 781, 945
HpyAV CCTTC 2 cut(s) 134, 309
HpyCH4III ACNGT 8 cut(s) 34, 43, 80, 205, 325, 370, 612, 989
HpyCH4IV ACGT 6 cut(s) 227, 537, 581, 605, 920, 975
HpyCH4V TGCA 2 cut(s) 4, 541
HpyF10VI GCNNNNNNNGC 3 cut(s) 677, 773, 803
HpyF3I CTNAG 2 cut(s) 277, 768
HpySE526I ACGT 6 cut(s) 227, 537, 581, 605, 920, 975
Hsp92II CATG 2 cut(s) 178, 413
HspAI GCGC 2 cut(s) 62, 1004
Kzo9I GATC 7 cut(s) 109, 287, 350, 841, 904, 936, 954
LmnI GCTCC 3 cut(s) 110, 829, 969
MaeI CTAG 1 cut(s) 468
MaeII ACGT 6 cut(s) 227, 537, 581, 605, 920, 975
MaeIII GTNAC 4 cut(s) 167, 460, 606, 983
MalI GATC 7 cut(s) 111, 289, 352, 843, 906, 938, 956
MboI GATC 7 cut(s) 109, 287, 350, 841, 904, 936, 954
MboII GAAGA 4 cut(s) 109, 256, 395, 503
MflI RGATCY 4 cut(s) 287, 350, 841, 936
MluCI AATT 1 cut(s) 134
MmeI TCCRAC 5 cut(s) 265, 577, 604, 706, 964
MnlI CCTC 5 cut(s) 38, 173, 527, 844, 863
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 7 cut(s) 188, 267, 489, 695, 705, 792, 930
MslI CAYNNNNRTG 1 cut(s) 912
MspR9I CCNGG 5 cut(s) 427, 557, 648, 690, 818
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 677, 773, 803
NciI CCSGG 4 cut(s) 427, 648, 690, 818
NdeII GATC 7 cut(s) 109, 287, 350, 841, 904, 936, 954
NlaIII CATG 2 cut(s) 178, 413
NlaIV GGNNCC 7 cut(s) 106, 180, 811, 916, 938, 971, 997
NmeAIII GCCGAG 1 cut(s) 611
NmuCI GTSAC 1 cut(s) 460
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 138
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 587, 810
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 5 cut(s) 19, 151, 436, 600, 781
Pfl23II CGTACG 1 cut(s) 612
PfoI TCCNGGA 1 cut(s) 646
PinAI ACCGGT 3 cut(s) 362, 396, 700
PkrI GCNGC 1 cut(s) 554
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
Ppu21I YACGTR 3 cut(s) 228, 538, 921
PpuMI RGGWCCY 1 cut(s) 809
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 1 cut(s) 555
PspCI CACGTG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 555
PspLI CGTACG 1 cut(s) 612
PspN4I GGNNCC 7 cut(s) 106, 180, 811, 916, 938, 971, 997
PspPI GGNCC 3 cut(s) 179, 809, 995
PspPPI RGGWCCY 1 cut(s) 809
PsuI RGATCY 4 cut(s) 287, 350, 841, 936
RsaI GTAC 9 cut(s) 36, 221, 327, 367, 614, 675, 803, 884, 991
RsaNI GTAC 9 cut(s) 35, 220, 326, 366, 613, 674, 802, 883, 990
RseI CAYNNNNRTG 1 cut(s) 912
SaqAI TTAA 7 cut(s) 188, 267, 489, 695, 705, 792, 930
SatI GCNGC 1 cut(s) 553
Sau3AI GATC 7 cut(s) 109, 287, 350, 841, 904, 936, 954
Sau96I GGNCC 3 cut(s) 179, 809, 995
ScrFI CCNGG 5 cut(s) 427, 557, 648, 690, 818
SfuI TTCGAA 1 cut(s) 138
SgrAI CRCCGGYG 1 cut(s) 58
SinI GGWCC 3 cut(s) 179, 809, 995
SmiMI CAYNNNNRTG 1 cut(s) 912
Sse9I AATT 1 cut(s) 134
SsiI CCGC 7 cut(s) 160, 456, 501, 522, 552, 839, 946
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 5 cut(s) 425, 555, 646, 688, 816
TaaI ACNGT 8 cut(s) 34, 43, 80, 205, 325, 370, 612, 989
TaiI ACGT 6 cut(s) 230, 540, 584, 608, 923, 978
TaqI TCGA 5 cut(s) 120, 138, 149, 434, 590
TasI AATT 1 cut(s) 134
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 5 cut(s) 19, 151, 436, 600, 781
Tru1I TTAA 7 cut(s) 188, 267, 489, 695, 705, 792, 930
Tru9I TTAA 7 cut(s) 188, 267, 489, 695, 705, 792, 930
TscAI CASTG 2 cut(s) 343, 965
TseFI GTSAC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 7 cut(s) 155, 245, 433, 576, 654, 732, 774
TspRI CASTG 2 cut(s) 343, 965
VpaK11BI GGWCC 3 cut(s) 179, 809, 995
XapI RAATTY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 534
XspI CTAG 1 cut(s) 468
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.