function) domain. TBL gene family has 46 members, two of which (TBR AT5G06700 and TBL3 AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff Wolf Scheible, 2010, personal communication)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25360 AT4G25360 AT5G51640 |
| fragaria_vesca | FvH4_7g28200 FvH4_7g28200 |
| malus_domestica | MD01G1185900.v1.1 MD07G1258100.v1.1 |
| prunus_persica | Prupe.2G282500_v2.0.a1 Prupe.2G282500_v2.0.a1 Prupe.2G282500_v2.0.a1 |
| pyrus_communis | pycom01g19760 pycom07g23110 |
| rosa_chinensis | RchiOBHm_Chr1g0375151 |
| rosa_laevigata | RLG00000026682 |
| rosa_multiflora | Rmu_co8297061.1_g000001 Rmu_co8308331.1_g000001 Rmu_sc0000554.1_g000023 Rmu_sc0002456.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00282970 |
| rosa_rugosa | Rorug01G0388800 |
| rosa_samantha | Rh1AG399400 Rh1BG365100 Rh1CG378000 Rh1DG395800 |
| rosa_wichuraiana | Rw1G035460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1380 |
| Acc36I | ACCTGC | 1 cut(s) | 673 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 952 |
| AccI | GTMKAC | 1 cut(s) | 461 |
| AccII | CGCG | 2 cut(s) | 574, 1244 |
| AciI | CCGC | 4 cut(s) | 572, 1116, 1160, 1244 |
| AclWI | GGATC | 5 cut(s) | 212, 313, 437, 1028, 1144 |
| AcoI | YGGCCR | 1 cut(s) | 971 |
| AcsI | RAATTY | 4 cut(s) | 28, 590, 877, 1174 |
| AcuI | CTGAAG | 1 cut(s) | 1298 |
| AfaI | GTAC | 2 cut(s) | 894, 1090 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 527, 952 |
| AgsI | TTSAA | 7 cut(s) | 27, 33, 72, 363, 793, 866, 1478 |
| AjnI | CCWGG | 3 cut(s) | 1168, 1327, 1420 |
| Alw26I | GTCTC | 2 cut(s) | 173, 561 |
| AlwI | GGATC | 5 cut(s) | 212, 313, 437, 1028, 1144 |
| Ama87I | CYCGRG | 1 cut(s) | 1256 |
| AoxI | GGCC | 3 cut(s) | 958, 971, 1424 |
| ApoI | RAATTY | 4 cut(s) | 28, 590, 877, 1174 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 64, 870 |
| AspLEI | GCGC | 1 cut(s) | 858 |
| AspS9I | GGNCC | 5 cut(s) | 452, 781, 1331, 1373, 1424 |
| AsuHPI | GGTGA | 6 cut(s) | 194, 249, 347, 760, 1223, 1485 |
| AsuII | TTCGAA | 1 cut(s) | 317 |
| AvaI | CYCGRG | 1 cut(s) | 1256 |
| AvaII | GGWCC | 4 cut(s) | 452, 781, 1331, 1373 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 193, 226 |
| BalI | TGGCCA | 1 cut(s) | 973 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1146, 1178 |
| BauI | CACGAG | 2 cut(s) | 18, 1208 |
| BbsI | GAAGAC | 3 cut(s) | 351, 523, 665 |
| BciT130I | CCWGG | 3 cut(s) | 1170, 1329, 1422 |
| BciVI | GTATCC | 2 cut(s) | 147, 221 |
| BclI | TGATCA | 1 cut(s) | 1102 |
| BcoDI | GTCTC | 2 cut(s) | 173, 561 |
| BfaI | CTAG | 2 cut(s) | 246, 620 |
| BfmI | CTRYAG | 3 cut(s) | 169, 813, 1026 |
| BfuAI | ACCTGC | 1 cut(s) | 673 |
| BfuI | GTATCC | 2 cut(s) | 147, 221 |
| BisI | GCNGC | 1 cut(s) | 1160 |
| BlsI | GCNGC | 1 cut(s) | 1161 |
| Bme1390I | CCNGG | 3 cut(s) | 1170, 1329, 1422 |
| Bme18I | GGWCC | 4 cut(s) | 452, 781, 1331, 1373 |
| BmeT110I | CYCGRG | 1 cut(s) | 1256 |
| BmgT120I | GGNCC | 5 cut(s) | 452, 781, 1331, 1373, 1424 |
| BmiI | GGNNCC | 2 cut(s) | 148, 453 |
| BmrFI | CCNGG | 3 cut(s) | 1170, 1329, 1422 |
| BmsI | GCATC | 3 cut(s) | 483, 571, 708 |
| BpiI | GAAGAC | 3 cut(s) | 351, 523, 665 |
| BpmI | CTGGAG | 2 cut(s) | 562, 1475 |
| Bpu14I | TTCGAA | 1 cut(s) | 317 |
| BpuEI | CTTGAG | 2 cut(s) | 617, 818 |
| BsaAI | YACGTR | 2 cut(s) | 135, 1088 |
| BsaBI | GATNNNNATC | 2 cut(s) | 222, 420 |
| BsaI | GGTCTC | 1 cut(s) | 173 |
| BsaJI | CCNNGG | 4 cut(s) | 300, 703, 1169, 1421 |
| BsaWI | WCCGGW | 1 cut(s) | 694 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 527, 952 |
| Bse1I | ACTGG | 8 cut(s) | 196, 263, 437, 545, 914, 961, 1135, 1427 |
| Bse3DI | GCAATG | 2 cut(s) | 517, 1053 |
| Bse8I | GATNNNNATC | 2 cut(s) | 222, 420 |
| BseBI | CCWGG | 3 cut(s) | 1170, 1329, 1422 |
| BseDI | CCNNGG | 4 cut(s) | 300, 703, 1169, 1421 |
| BseGI | GGATG | 3 cut(s) | 768, 1252, 1324 |
| BseJI | GATNNNNATC | 2 cut(s) | 222, 420 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 527, 952 |
| BseMI | GCAATG | 2 cut(s) | 517, 1053 |
| BseMII | CTCAG | 4 cut(s) | 264, 363, 572, 1287 |
| BseNI | ACTGG | 8 cut(s) | 196, 263, 437, 545, 914, 961, 1135, 1427 |
| BseRI | GAGGAG | 1 cut(s) | 1380 |
| Bsh1236I | CGCG | 2 cut(s) | 574, 1244 |
| BshFI | GGCC | 3 cut(s) | 960, 973, 1426 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1256 |
| BsiSI | CCGG | 1 cut(s) | 695 |
| BslFI | GGGAC | 1 cut(s) | 465 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 527, 952 |
| BsmAI | GTCTC | 2 cut(s) | 173, 561 |
| BsmBI | CGTCTC | 1 cut(s) | 561 |
| BsmFI | GGGAC | 1 cut(s) | 465 |
| BsnI | GGCC | 3 cut(s) | 960, 973, 1426 |
| Bso31I | GGTCTC | 1 cut(s) | 173 |
| BsoBI | CYCGRG | 1 cut(s) | 1256 |
| Bsp119I | TTCGAA | 1 cut(s) | 317 |
| BspACI | CCGC | 4 cut(s) | 572, 1116, 1160, 1244 |
| BspANI | GGCC | 3 cut(s) | 960, 973, 1426 |
| BspCNI | CTCAG | 4 cut(s) | 263, 362, 571, 1288 |
| BspFNI | CGCG | 2 cut(s) | 574, 1244 |
| BspHI | TCATGA | 1 cut(s) | 310 |
| BspLI | GGNNCC | 2 cut(s) | 148, 453 |
| BspMI | ACCTGC | 1 cut(s) | 673 |
| BspPI | GGATC | 5 cut(s) | 212, 313, 437, 1028, 1144 |
| BspQI | GCTCTTC | 1 cut(s) | 876 |
| BspT104I | TTCGAA | 1 cut(s) | 317 |
| BspTNI | GGTCTC | 1 cut(s) | 173 |
| BsrDI | GCAATG | 2 cut(s) | 517, 1053 |
| BsrI | ACTGG | 8 cut(s) | 196, 263, 437, 545, 914, 961, 1135, 1427 |
| BssECI | CCNNGG | 4 cut(s) | 300, 703, 1169, 1421 |
| BssNAI | GTATAC | 1 cut(s) | 462 |
| BssSI | CACGAG | 2 cut(s) | 18, 1208 |
| BssT1I | CCWWGG | 1 cut(s) | 300 |
| Bst1107I | GTATAC | 1 cut(s) | 462 |
| Bst2BI | CACGAG | 2 cut(s) | 18, 1208 |
| Bst2UI | CCWGG | 3 cut(s) | 1170, 1329, 1422 |
| Bst6I | CTCTTC | 1 cut(s) | 876 |
| BstBAI | YACGTR | 2 cut(s) | 135, 1088 |
| BstBI | TTCGAA | 1 cut(s) | 317 |
| BstC8I | GCNNGC | 2 cut(s) | 1218, 1418 |
| BstDEI | CTNAG | 5 cut(s) | 250, 349, 558, 585, 1296 |
| BstDSI | CCRYGG | 1 cut(s) | 703 |
| BstF5I | GGATG | 3 cut(s) | 768, 1252, 1324 |
| BstFNI | CGCG | 2 cut(s) | 574, 1244 |
| BstHHI | GCGC | 1 cut(s) | 858 |
| BstMAI | GTCTC | 2 cut(s) | 173, 561 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1213 |
| BstNI | CCWGG | 3 cut(s) | 1170, 1329, 1422 |
| BstNSI | RCATGY | 1 cut(s) | 1420 |
| BstSCI | CCNGG | 3 cut(s) | 1168, 1327, 1420 |
| BstSFI | CTRYAG | 3 cut(s) | 169, 813, 1026 |
| BstSNI | TACGTA | 1 cut(s) | 1088 |
| BstUI | CGCG | 2 cut(s) | 574, 1244 |
| BstV2I | GAAGAC | 3 cut(s) | 351, 523, 665 |
| BstX2I | RGATCY | 2 cut(s) | 305, 1020 |
| BstYI | RGATCY | 2 cut(s) | 305, 1020 |
| BstZ17I | GTATAC | 1 cut(s) | 462 |
| BsuI | GTATCC | 2 cut(s) | 147, 221 |
| BsuRI | GGCC | 3 cut(s) | 960, 973, 1426 |
| BtgI | CCRYGG | 1 cut(s) | 703 |
| BtsCI | GGATG | 3 cut(s) | 768, 1252, 1324 |
| BtsIMutI | CAGTG | 5 cut(s) | 566, 907, 1128, 1293, 1434 |
| BveI | ACCTGC | 1 cut(s) | 673 |
| Cac8I | GCNNGC | 2 cut(s) | 1218, 1418 |
| CciI | TCATGA | 1 cut(s) | 310 |
| CfoI | GCGC | 1 cut(s) | 858 |
| Cfr13I | GGNCC | 5 cut(s) | 452, 781, 1331, 1373, 1424 |
| Csp6I | GTAC | 2 cut(s) | 893, 1089 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 249, 284 |
| CviAII | CATG | 8 cut(s) | 215, 311, 398, 425, 664, 1140, 1417, 1437 |
| CviQI | GTAC | 2 cut(s) | 893, 1089 |
| DdeI | CTNAG | 5 cut(s) | 250, 349, 558, 585, 1296 |
| DraI | TTTAAA | 1 cut(s) | 939 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1380 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1380 |
| EaeI | YGGCCR | 1 cut(s) | 971 |
| Eam1104I | CTCTTC | 1 cut(s) | 876 |
| EarI | CTCTTC | 1 cut(s) | 876 |
| Eco105I | TACGTA | 1 cut(s) | 1088 |
| Eco130I | CCWWGG | 1 cut(s) | 300 |
| Eco31I | GGTCTC | 1 cut(s) | 173 |
| Eco32I | GATATC | 1 cut(s) | 1291 |
| Eco47I | GGWCC | 4 cut(s) | 452, 781, 1331, 1373 |
| Eco57I | CTGAAG | 1 cut(s) | 1298 |
| Eco88I | CYCGRG | 1 cut(s) | 1256 |
| EcoRII | CCWGG | 3 cut(s) | 1168, 1327, 1420 |
| EcoRV | GATATC | 1 cut(s) | 1291 |
| EcoT14I | CCWWGG | 1 cut(s) | 300 |
| ErhI | CCWWGG | 1 cut(s) | 300 |
| Esp3I | CGTCTC | 1 cut(s) | 561 |
| FaeI | CATG | 8 cut(s) | 218, 314, 401, 428, 667, 1143, 1420, 1440 |
| FaqI | GGGAC | 1 cut(s) | 465 |
| FatI | CATG | 8 cut(s) | 214, 310, 397, 424, 663, 1139, 1416, 1436 |
| FbaI | TGATCA | 1 cut(s) | 1102 |
| FblI | GTMKAC | 1 cut(s) | 461 |
| Fnu4HI | GCNGC | 1 cut(s) | 1160 |
| FokI | GGATG | 3 cut(s) | 775, 1259, 1311 |
| Fsp4HI | GCNGC | 1 cut(s) | 1160 |
| FspBI | CTAG | 2 cut(s) | 246, 620 |
| GlaI | GCGC | 1 cut(s) | 857 |
| GluI | GCNGC | 1 cut(s) | 1160 |
| GsuI | CTGGAG | 2 cut(s) | 562, 1475 |
| HaeIII | GGCC | 3 cut(s) | 960, 973, 1426 |
| HapII | CCGG | 1 cut(s) | 695 |
| HhaI | GCGC | 1 cut(s) | 858 |
| Hin1II | CATG | 8 cut(s) | 218, 314, 401, 428, 667, 1143, 1420, 1440 |
| Hin6I | GCGC | 1 cut(s) | 856 |
| HinP1I | GCGC | 1 cut(s) | 856 |
| HincII | GTYRAC | 1 cut(s) | 700 |
| HindII | GTYRAC | 1 cut(s) | 700 |
| HindIII | AAGCTT | 1 cut(s) | 836 |
| HinfI | GANTC | 5 cut(s) | 254, 314, 635, 659, 1342 |
| HpaI | GTTAAC | 1 cut(s) | 700 |
| HpaII | CCGG | 1 cut(s) | 695 |
| HphI | GGTGA | 6 cut(s) | 194, 249, 347, 760, 1223, 1485 |
| Hpy166II | GTNNAC | 6 cut(s) | 462, 700, 1194, 1373, 1432, 1493 |
| Hpy188I | TCNGA | 6 cut(s) | 253, 447, 654, 762, 876, 1077 |
| Hpy188III | TCNNGA | 7 cut(s) | 221, 311, 596, 1258, 1346, 1454, 1503 |
| Hpy8I | GTNNAC | 6 cut(s) | 462, 700, 1194, 1373, 1432, 1493 |
| Hpy99I | CGWCG | 2 cut(s) | 1010, 1322 |
| HpyAV | CCTTC | 2 cut(s) | 1106, 1472 |
| HpyCH4IV | ACGT | 5 cut(s) | 134, 192, 1005, 1087, 1369 |
| HpyCH4V | TGCA | 8 cut(s) | 77, 496, 721, 917, 1143, 1207, 1408, 1416 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1213 |
| HpyF3I | CTNAG | 5 cut(s) | 250, 349, 558, 585, 1296 |
| HpySE526I | ACGT | 5 cut(s) | 134, 192, 1005, 1087, 1369 |
| Hsp92II | CATG | 8 cut(s) | 218, 314, 401, 428, 667, 1143, 1420, 1440 |
| HspAI | GCGC | 1 cut(s) | 856 |
| Ksp22I | TGATCA | 1 cut(s) | 1102 |
| KspAI | GTTAAC | 1 cut(s) | 700 |
| LguI | GCTCTTC | 1 cut(s) | 876 |
| LweI | GCATC | 3 cut(s) | 483, 571, 708 |
| MaeI | CTAG | 2 cut(s) | 246, 620 |
| MaeII | ACGT | 5 cut(s) | 134, 192, 1005, 1087, 1369 |
| MaeIII | GTNAC | 7 cut(s) | 154, 227, 255, 428, 823, 905, 1180 |
| MfeI | CAATTG | 1 cut(s) | 72 |
| MflI | RGATCY | 2 cut(s) | 305, 1020 |
| MlsI | TGGCCA | 1 cut(s) | 973 |
| MluCI | AATT | 6 cut(s) | 28, 72, 590, 861, 877, 1174 |
| MluNI | TGGCCA | 1 cut(s) | 973 |
| MlyI | GAGTC | 3 cut(s) | 263, 668, 1351 |
| MnlI | CCTC | 9 cut(s) | 66, 160, 489, 602, 950, 1176, 1291, 1398, 1401 |
| Mox20I | TGGCCA | 1 cut(s) | 973 |
| MroXI | GAANNNNTTC | 2 cut(s) | 64, 870 |
| MscI | TGGCCA | 1 cut(s) | 973 |
| MseI | TTAA | 4 cut(s) | 95, 699, 938, 999 |
| Msp20I | TGGCCA | 1 cut(s) | 973 |
| MspI | CCGG | 1 cut(s) | 695 |
| MspR9I | CCNGG | 3 cut(s) | 1170, 1329, 1422 |
| MunI | CAATTG | 1 cut(s) | 72 |
| MvaI | CCWGG | 3 cut(s) | 1170, 1329, 1422 |
| MvnI | CGCG | 2 cut(s) | 574, 1244 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1213 |
| NlaIII | CATG | 8 cut(s) | 218, 314, 401, 428, 667, 1143, 1420, 1440 |
| NlaIV | GGNNCC | 2 cut(s) | 148, 453 |
| NmuCI | GTSAC | 2 cut(s) | 255, 905 |
| NspI | RCATGY | 1 cut(s) | 1420 |
| NspV | TTCGAA | 1 cut(s) | 317 |
| PaeI | GCATGC | 1 cut(s) | 1420 |
| PagI | TCATGA | 1 cut(s) | 310 |
| PciSI | GCTCTTC | 1 cut(s) | 876 |
| PdmI | GAANNNNTTC | 2 cut(s) | 64, 870 |
| PfeI | GAWTC | 2 cut(s) | 314, 635 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 952 |
| PkrI | GCNGC | 1 cut(s) | 1161 |
| PleI | GAGTC | 3 cut(s) | 262, 667, 1350 |
| PpsI | GAGTC | 3 cut(s) | 262, 667, 1350 |
| Ppu21I | YACGTR | 2 cut(s) | 135, 1088 |
| Psp6I | CCWGG | 3 cut(s) | 1168, 1327, 1420 |
| PspGI | CCWGG | 3 cut(s) | 1168, 1327, 1420 |
| PspN4I | GGNNCC | 2 cut(s) | 148, 453 |
| PspPI | GGNCC | 5 cut(s) | 452, 781, 1331, 1373, 1424 |
| PsuI | RGATCY | 2 cut(s) | 305, 1020 |
| RsaI | GTAC | 2 cut(s) | 894, 1090 |
| RsaNI | GTAC | 2 cut(s) | 893, 1089 |
| SapI | GCTCTTC | 1 cut(s) | 876 |
| SaqAI | TTAA | 4 cut(s) | 95, 699, 938, 999 |
| SatI | GCNGC | 1 cut(s) | 1160 |
| Sau96I | GGNCC | 5 cut(s) | 452, 781, 1331, 1373, 1424 |
| SchI | GAGTC | 3 cut(s) | 263, 668, 1351 |
| ScrFI | CCNGG | 3 cut(s) | 1170, 1329, 1422 |
| SfaNI | GCATC | 3 cut(s) | 483, 571, 708 |
| SfcI | CTRYAG | 3 cut(s) | 169, 813, 1026 |
| SfuI | TTCGAA | 1 cut(s) | 317 |
| SinI | GGWCC | 4 cut(s) | 452, 781, 1331, 1373 |
| SmlI | CTYRAG | 2 cut(s) | 596, 833 |
| SmoI | CTYRAG | 2 cut(s) | 596, 833 |
| SnaBI | TACGTA | 1 cut(s) | 1088 |
| SphI | GCATGC | 1 cut(s) | 1420 |
| Sse9I | AATT | 6 cut(s) | 28, 72, 590, 861, 877, 1174 |
| SsiI | CCGC | 4 cut(s) | 572, 1116, 1160, 1244 |
| SspMI | CTAG | 2 cut(s) | 246, 620 |
| StyD4I | CCNGG | 3 cut(s) | 1168, 1327, 1420 |
| StyI | CCWWGG | 1 cut(s) | 300 |
| TaiI | ACGT | 5 cut(s) | 137, 195, 1008, 1090, 1372 |
| TaqI | TCGA | 5 cut(s) | 58, 317, 882, 1008, 1268 |
| TasI | AATT | 6 cut(s) | 28, 72, 590, 861, 877, 1174 |
| TatI | WGTACW | 1 cut(s) | 892 |
| TauI | GCSGC | 1 cut(s) | 1162 |
| TfiI | GAWTC | 2 cut(s) | 314, 635 |
| Tru1I | TTAA | 4 cut(s) | 95, 699, 938, 999 |
| Tru9I | TTAA | 4 cut(s) | 95, 699, 938, 999 |
| TscAI | CASTG | 5 cut(s) | 566, 914, 1135, 1300, 1434 |
| TseFI | GTSAC | 2 cut(s) | 255, 905 |
| Tsp45I | GTSAC | 2 cut(s) | 255, 905 |
| TspDTI | ATGAA | 5 cut(s) | 393, 549, 810, 888, 1125 |
| TspRI | CASTG | 5 cut(s) | 566, 914, 1135, 1300, 1434 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 952 |
| VpaK11BI | GGWCC | 4 cut(s) | 452, 781, 1331, 1373 |
| XapI | RAATTY | 4 cut(s) | 28, 590, 877, 1174 |
| XceI | RCATGY | 1 cut(s) | 1420 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1434 |
| XmiI | GTMKAC | 1 cut(s) | 461 |
| XmnI | GAANNNNTTC | 2 cut(s) | 64, 870 |
| XspI | CTAG | 2 cut(s) | 246, 620 |