Rroxscaffold_4G00282970

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
5054540 .. 5058206
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282970.1

Sequence Viewer

Length: 1539 bp
ATGAGTGACAAGGATGCGGTGTCCGAGTCAAGTTCTGATAAGAATGTTGGTTCCGACTCCAATTCAAAAGTTCCCACGAGTTCAAATAGTCCATTGGTTGGGTCAGAAGCTAAAGACCTGCCAGATGTGCCGGTAGTTAATGAGAATGTTGTATCAGTGAAACCGGTTGATCAACCAGTGCCTTCTGGTTCGAGTAGTTCTTCAGTTGATGACAATGTGGAAACGACTCATCAGACTTCGACCAATGATACCAACTCACAAGTGTCCTTGAGTACTATTCACAATGAGAGTGAAGATGTAGCAAAACCTGCTCTTGGATCATCCAATGTTACTGAAATTTCTGTGGGTCCGGAACCAAATGATACTACTACCTCTTCATCTGATTCCAAATCTGGAAGCAATCCAGCTTCTTCTGATCTGTCCAGTGATGCAAGTACTGGTTCACTCGATACAGGCTGTGATCTGTACCATGGAAGTTGGTTTTATGATTCATCAGGACCACAGTATACGAACAATACATGCCCTGTCCTGACTCAGATGCAAAATTGCCAGGGTAATGGGAGGCCTGATAATGAGTATGAAAACTGGCGATGGAAACCCCTTCAGTGTGACCTGCCACGCTTTGATGCCCGGAAATTTCTAGAGTTGATGAGGGGGAAGACAATAGCTTTCATTGGTGATTCTGTTGCTCGAAATCACATGGAATCATTGTTGTGCATTCTCTGGCAGGTAGAAGCCCCAAAAAACAGGGGCAACAAGAAAATGCAAAGATATTATTTCAAGTCTACAAATACTTTTGTAGTACGTATTTGGTCCTCGTGGCTTGTCAAGCAGACATCCGAAGCATTTGATTTTGCCCCAGAGGGTGTGGCCAAGCTCCACCTTGATGCTCCTGATGACCGCTTGATGGATGTCATTCCACAGTTTGATGTGATTATTTTCTCCTCTGGCCATTGGTTTGCTAAGCAGTCTGTTTATATCCTAAACAATGAGATTGTGGGAGGACAGTTGTGGTGGCCAGATAAATCGAAGCAAATGAAGATTAACAATATTGAAGCATTTGGAATATCCGTTGAGACGATTCTCACTGCTCTTGCTACACATCCAAATTATACAGGGATTGCCATTGTTCGTTCCTATTCACCTGATCATTATGAAGGCGGGGCTTGGAATACAGGTGGATCATGCACTGGAAAAGTAAGGCCTCTTGCACCTGGGCAGAGAGTGGAAAATGGCTTTACAAATATAATGCATGAAAAACAGGTTATGGGTTTTAACCGTGCAATAAAGAAATTGACAAACAAGTCGAAGCTGAAGTTGATGGATATCACCGAAGCTTTTGAGTACCGTCATGATGGACATCCCGGTCCATATAGAAGCCCTGACCCGAATAAGCAAACAAAGCGTGGCCCTGATGGAAAGCCACCACCACAGGATTGCTTACATTGGTGCATGCCAGGTCCAGTTGATACTTGGAACGAATTTGTGCTTGAAATCATTAGGAGAGAATATGAGGGCAGCAAGAACTTATCTTCTTGA

Protein Analysis

512

Amino Acids

56.57

Weight (kDa)

5.46

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 152 - 204 7.3e-20 PMR5 N terminal Domain
PC-Esterase PF13839 205 - 498 2.5e-80 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1303, 1365
Acc36I ACCTGC 4 cut(s) 126, 316, 621, 718
AccB7I CCANNNNNTGG 1 cut(s) 98
AccI GTMKAC 2 cut(s) 506, 785
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 3 cut(s) 17, 901, 1161
AclWI GGATC 2 cut(s) 325, 1189
AcoI YGGCCR 3 cut(s) 870, 949, 1016
AcsI RAATTY 3 cut(s) 336, 635, 1481
AcuI CTGAAG 3 cut(s) 186, 587, 1334
AfaI GTAC 5 cut(s) 274, 436, 467, 804, 1346
AfiI CCNNNNNNNGG 3 cut(s) 98, 314, 907
AgeI ACCGGT 1 cut(s) 163
AgsI TTSAA 5 cut(s) 66, 84, 781, 1055, 1493
AjnI CCWGG 3 cut(s) 549, 1213, 1456
AluBI AGCT 6 cut(s) 110, 407, 668, 877, 1312, 1337
AluI AGCT 6 cut(s) 110, 407, 668, 877, 1312, 1337
Alw26I GTCTC 1 cut(s) 1070
AlwI GGATC 2 cut(s) 325, 1189
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 6 cut(s) 563, 870, 949, 1016, 1202, 1408
ApeKI GCWGC 1 cut(s) 1518
ApoI RAATTY 3 cut(s) 336, 635, 1481
AsiGI ACCGGT 1 cut(s) 163
AspS9I GGNCC 6 cut(s) 347, 497, 813, 1367, 1409, 1460
AsuC2I CCSGG 2 cut(s) 631, 1365
AsuHPI GGTGA 3 cut(s) 689, 1134, 1321
AvaII GGWCC 5 cut(s) 347, 497, 813, 1367, 1460
BalI TGGCCA 3 cut(s) 872, 951, 1018
BauI CACGAG 2 cut(s) 76, 817
BbsI GAAGAC 1 cut(s) 665
BbvI GCAGC 1 cut(s) 1530
BccI CCATC 5 cut(s) 585, 901, 1315, 1349, 1409
BciT130I CCWGG 3 cut(s) 551, 1215, 1458
BclI TGATCA 2 cut(s) 169, 1147
BcnI CCSGG 2 cut(s) 631, 1365
BcoDI GTCTC 1 cut(s) 1070
BfaI CTAG 1 cut(s) 641
BfuAI ACCTGC 4 cut(s) 126, 316, 621, 718
BisI GCNGC 1 cut(s) 1519
BlpI GCTNAGC 1 cut(s) 963
BlsI GCNGC 1 cut(s) 1520
BmcAI AGTACT 2 cut(s) 274, 436
Bme1390I CCNGG 5 cut(s) 551, 631, 1215, 1365, 1458
Bme18I GGWCC 5 cut(s) 347, 497, 813, 1367, 1460
BmgT120I GGNCC 6 cut(s) 347, 497, 813, 1367, 1409, 1460
BmiI GGNNCC 3 cut(s) 52, 348, 354
BmrFI CCNGG 5 cut(s) 551, 631, 1215, 1365, 1458
BmsI GCATC 5 cut(s) 4, 418, 528, 616, 877
BpiI GAAGAC 1 cut(s) 665
Bpu1102I GCTNAGC 1 cut(s) 963
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 2 cut(s) 631, 1365
BsaAI YACGTR 1 cut(s) 806
BsaBI GATNNNNATC 2 cut(s) 1325, 1359
BsaJI CCNNGG 3 cut(s) 469, 550, 1214
BsaWI WCCGGW 2 cut(s) 163, 349
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 314, 907
Bse118I RCCGGY 2 cut(s) 130, 163
Bse1I ACTGG 6 cut(s) 176, 423, 442, 590, 1195, 1463
Bse8I GATNNNNATC 2 cut(s) 1325, 1359
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 3 cut(s) 551, 1215, 1458
BseDI CCNNGG 3 cut(s) 469, 550, 1214
BseGI GGATG 6 cut(s) 19, 320, 836, 916, 1102, 1360
BseJI GATNNNNATC 2 cut(s) 1325, 1359
BseLI CCNNNNNNNGG 3 cut(s) 98, 314, 907
BseMII CTCAG 1 cut(s) 548
BseNI ACTGG 6 cut(s) 176, 423, 442, 590, 1195, 1463
BseRI GAGGAG 1 cut(s) 934
BseXI GCAGC 1 cut(s) 1530
BshFI GGCC 6 cut(s) 565, 872, 951, 1018, 1204, 1410
BshTI ACCGGT 1 cut(s) 163
BsiSI CCGG 5 cut(s) 131, 164, 350, 631, 1365
BslI CCNNNNNNNGG 3 cut(s) 98, 314, 907
BsmAI GTCTC 1 cut(s) 1070
BsmBI CGTCTC 1 cut(s) 1070
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 6 cut(s) 565, 872, 951, 1018, 1204, 1410
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 6 cut(s) 169, 317, 415, 460, 1147, 1181
Bsp1720I GCTNAGC 1 cut(s) 963
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 3 cut(s) 17, 901, 1161
BspANI GGCC 6 cut(s) 565, 872, 951, 1018, 1204, 1410
BspCNI CTCAG 1 cut(s) 547
BspEI TCCGGA 1 cut(s) 349
BspHI TCATGA 1 cut(s) 1351
BspLI GGNNCC 3 cut(s) 52, 348, 354
BspMI ACCTGC 4 cut(s) 126, 316, 621, 718
BspPI GGATC 2 cut(s) 325, 1189
BsrFI RCCGGY 2 cut(s) 130, 163
BsrI ACTGG 6 cut(s) 176, 423, 442, 590, 1195, 1463
BssAI RCCGGY 2 cut(s) 130, 163
BssECI CCNNGG 3 cut(s) 469, 550, 1214
BssMI GATC 6 cut(s) 169, 317, 415, 460, 1147, 1181
BssNAI GTATAC 1 cut(s) 507
BssSI CACGAG 2 cut(s) 76, 817
BssT1I CCWWGG 1 cut(s) 469
Bst1107I GTATAC 1 cut(s) 507
Bst2BI CACGAG 2 cut(s) 76, 817
Bst2UI CCWGG 3 cut(s) 551, 1215, 1458
Bst4CI ACNGT 5 cut(s) 504, 924, 1008, 1280, 1349
Bst6I CTCTTC 1 cut(s) 379
BstAPI GCANNNNNTGC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 806
BstC8I GCNNGC 1 cut(s) 1454
BstDEI CTNAG 2 cut(s) 534, 963
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 6 cut(s) 19, 320, 836, 916, 1102, 1360
BstKTI GATC 6 cut(s) 172, 320, 418, 463, 1150, 1184
BstMAI GTCTC 1 cut(s) 1070
BstMBI GATC 6 cut(s) 169, 317, 415, 460, 1147, 1181
BstMWI GCNNNNNNNGC 4 cut(s) 127, 308, 829, 1402
BstNI CCWGG 3 cut(s) 551, 1215, 1458
BstNSI RCATGY 2 cut(s) 522, 1456
BstSCI CCNGG 5 cut(s) 549, 629, 1213, 1363, 1456
BstSNI TACGTA 1 cut(s) 806
BstV1I GCAGC 1 cut(s) 1530
BstV2I GAAGAC 1 cut(s) 665
BstXI CCANNNNNNTGG 1 cut(s) 557
BstZ17I GTATAC 1 cut(s) 507
BsuRI GGCC 6 cut(s) 565, 872, 951, 1018, 1204, 1410
BtgI CCRYGG 1 cut(s) 469
BtgZI GCGATG 1 cut(s) 604
BtsCI GGATG 6 cut(s) 19, 320, 836, 916, 1102, 1360
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 6 cut(s) 162, 183, 430, 611, 1086, 1188
BveI ACCTGC 4 cut(s) 126, 316, 621, 718
Cac8I GCNNGC 1 cut(s) 1454
CciI TCATGA 1 cut(s) 1351
Cfr10I RCCGGY 2 cut(s) 130, 163
Cfr13I GGNCC 6 cut(s) 347, 497, 813, 1367, 1409, 1460
Csp6I GTAC 5 cut(s) 273, 435, 466, 803, 1345
CspAI ACCGGT 1 cut(s) 163
CviAII CATG 7 cut(s) 470, 519, 700, 1185, 1253, 1352, 1453
CviQI GTAC 5 cut(s) 273, 435, 466, 803, 1345
DdeI CTNAG 2 cut(s) 534, 963
DpnI GATC 6 cut(s) 171, 319, 417, 462, 1149, 1183
DpnII GATC 6 cut(s) 169, 317, 415, 460, 1147, 1181
DrdI GACNNNNNNGTC 2 cut(s) 1303, 1365
DseDI GACNNNNNNGTC 2 cut(s) 1303, 1365
EaeI YGGCCR 3 cut(s) 870, 949, 1016
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco105I TACGTA 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 469
Eco147I AGGCCT 2 cut(s) 565, 1204
Eco32I GATATC 1 cut(s) 1327
Eco47I GGWCC 5 cut(s) 347, 497, 813, 1367, 1460
Eco57I CTGAAG 3 cut(s) 186, 587, 1334
EcoRII CCWGG 3 cut(s) 549, 1213, 1456
EcoRV GATATC 1 cut(s) 1327
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 1254
ErhI CCWWGG 1 cut(s) 469
Esp3I CGTCTC 1 cut(s) 1070
FaeI CATG 7 cut(s) 473, 522, 703, 1188, 1256, 1355, 1456
FatI CATG 7 cut(s) 469, 518, 699, 1184, 1252, 1351, 1452
FauI CCCGC 1 cut(s) 1154
FbaI TGATCA 2 cut(s) 169, 1147
FblI GTMKAC 2 cut(s) 506, 785
Fnu4HI GCNGC 1 cut(s) 1519
FokI GGATG 6 cut(s) 26, 307, 823, 923, 1089, 1347
Fsp4HI GCNGC 1 cut(s) 1519
FspBI CTAG 1 cut(s) 641
GluI GCNGC 1 cut(s) 1519
HaeIII GGCC 6 cut(s) 565, 872, 951, 1018, 1204, 1410
HapII CCGG 5 cut(s) 131, 164, 350, 631, 1365
Hin1II CATG 7 cut(s) 473, 522, 703, 1188, 1256, 1355, 1456
HindIII AAGCTT 1 cut(s) 1335
HinfI GANTC 9 cut(s) 26, 56, 226, 383, 488, 532, 680, 704, 1081
HpaII CCGG 5 cut(s) 131, 164, 350, 631, 1365
HphI GGTGA 3 cut(s) 689, 1134, 1321
Hpy166II GTNNAC 3 cut(s) 443, 507, 786
Hpy188I TCNGA 9 cut(s) 25, 37, 55, 106, 234, 382, 415, 537, 841
Hpy188III TCNNGA 8 cut(s) 350, 393, 495, 529, 641, 893, 1352, 1536
Hpy8I GTNNAC 3 cut(s) 443, 507, 786
HpyAV CCTTC 3 cut(s) 192, 611, 1151
HpyCH4III ACNGT 5 cut(s) 504, 924, 1008, 1280, 1349
HpyCH4IV ACGT 1 cut(s) 805
HpyCH4V TGCA 9 cut(s) 431, 541, 717, 766, 1188, 1211, 1252, 1283, 1452
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 308, 829, 1402
HpyF3I CTNAG 2 cut(s) 534, 963
HpySE526I ACGT 1 cut(s) 805
Hsp92II CATG 7 cut(s) 473, 522, 703, 1188, 1256, 1355, 1456
Kpn2I TCCGGA 1 cut(s) 349
Ksp22I TGATCA 2 cut(s) 169, 1147
Kzo9I GATC 6 cut(s) 169, 317, 415, 460, 1147, 1181
LmnI GCTCC 2 cut(s) 882, 895
Lsp1109I GCAGC 1 cut(s) 1530
LweI GCATC 5 cut(s) 4, 418, 528, 616, 877
MaeI CTAG 1 cut(s) 641
MaeII ACGT 1 cut(s) 805
MaeIII GTNAC 3 cut(s) 5, 328, 608
MalI GATC 6 cut(s) 171, 319, 417, 462, 1149, 1183
MboI GATC 6 cut(s) 169, 317, 415, 460, 1147, 1181
MboII GAAGA 7 cut(s) 192, 305, 366, 402, 670, 1051, 1524
MlsI TGGCCA 3 cut(s) 872, 951, 1018
MluCI AATT 7 cut(s) 61, 336, 544, 635, 1108, 1292, 1481
MluNI TGGCCA 3 cut(s) 872, 951, 1018
MlyI GAGTC 4 cut(s) 35, 50, 220, 526
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 9 cut(s) 382, 555, 645, 826, 856, 955, 995, 1215, 1507
Mox20I TGGCCA 3 cut(s) 872, 951, 1018
Mph1103I ATGCAT 1 cut(s) 1254
MroI TCCGGA 1 cut(s) 349
MscI TGGCCA 3 cut(s) 872, 951, 1018
MseI TTAA 3 cut(s) 138, 1044, 1275
MslI CAYNNNNRTG 2 cut(s) 712, 885
Msp20I TGGCCA 3 cut(s) 872, 951, 1018
MspI CCGG 5 cut(s) 131, 164, 350, 631, 1365
MspR9I CCNGG 5 cut(s) 551, 631, 1215, 1365, 1458
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 3 cut(s) 551, 1215, 1458
MwoI GCNNNNNNNGC 4 cut(s) 127, 308, 829, 1402
NciI CCSGG 2 cut(s) 631, 1365
NcoI CCATGG 1 cut(s) 469
NdeII GATC 6 cut(s) 169, 317, 415, 460, 1147, 1181
NlaIII CATG 7 cut(s) 473, 522, 703, 1188, 1256, 1355, 1456
NlaIV GGNNCC 3 cut(s) 52, 348, 354
NmuCI GTSAC 2 cut(s) 5, 608
NsiI ATGCAT 1 cut(s) 1254
NspI RCATGY 2 cut(s) 522, 1456
PaeI GCATGC 1 cut(s) 1456
PagI TCATGA 1 cut(s) 1351
PceI AGGCCT 2 cut(s) 565, 1204
PctI GAATGC 1 cut(s) 717
PfeI GAWTC 5 cut(s) 383, 488, 680, 704, 1081
PflMI CCANNNNNTGG 1 cut(s) 98
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 1 cut(s) 1520
PleI GAGTC 4 cut(s) 34, 50, 220, 526
PpsI GAGTC 4 cut(s) 34, 50, 220, 526
Ppu21I YACGTR 1 cut(s) 806
Psp6I CCWGG 3 cut(s) 549, 1213, 1456
PspGI CCWGG 3 cut(s) 549, 1213, 1456
PspN4I GGNNCC 3 cut(s) 52, 348, 354
PspPI GGNCC 6 cut(s) 347, 497, 813, 1367, 1409, 1460
RsaI GTAC 5 cut(s) 274, 436, 467, 804, 1346
RsaNI GTAC 5 cut(s) 273, 435, 466, 803, 1345
RseI CAYNNNNRTG 2 cut(s) 712, 885
SaqAI TTAA 3 cut(s) 138, 1044, 1275
SatI GCNGC 1 cut(s) 1519
Sau3AI GATC 6 cut(s) 169, 317, 415, 460, 1147, 1181
Sau96I GGNCC 6 cut(s) 347, 497, 813, 1367, 1409, 1460
ScaI AGTACT 2 cut(s) 274, 436
SchI GAGTC 4 cut(s) 35, 50, 220, 526
ScrFI CCNGG 5 cut(s) 551, 631, 1215, 1365, 1458
SfaNI GCATC 5 cut(s) 4, 418, 528, 616, 877
SinI GGWCC 5 cut(s) 347, 497, 813, 1367, 1460
SmiMI CAYNNNNRTG 2 cut(s) 712, 885
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SnaBI TACGTA 1 cut(s) 806
SphI GCATGC 1 cut(s) 1456
Sse9I AATT 7 cut(s) 61, 336, 544, 635, 1108, 1292, 1481
SseBI AGGCCT 2 cut(s) 565, 1204
SsiI CCGC 3 cut(s) 17, 901, 1161
SspI AATATT 1 cut(s) 1051
SspMI CTAG 1 cut(s) 641
StuI AGGCCT 2 cut(s) 565, 1204
StyD4I CCNGG 5 cut(s) 549, 629, 1213, 1363, 1456
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 5 cut(s) 504, 924, 1008, 1280, 1349
TaiI ACGT 1 cut(s) 808
TaqI TCGA 6 cut(s) 191, 239, 447, 691, 1028, 1307
TasI AATT 7 cut(s) 61, 336, 544, 635, 1108, 1292, 1481
TatI WGTACW 2 cut(s) 272, 434
TfiI GAWTC 5 cut(s) 383, 488, 680, 704, 1081
Tru1I TTAA 3 cut(s) 138, 1044, 1275
Tru9I TTAA 3 cut(s) 138, 1044, 1275
TscAI CASTG 6 cut(s) 162, 183, 430, 611, 1093, 1195
TseFI GTSAC 2 cut(s) 5, 608
TseI GCWGC 1 cut(s) 1518
Tsp45I GTSAC 2 cut(s) 5, 608
TspDTI ATGAA 7 cut(s) 366, 480, 594, 661, 1052, 1170, 1269
TspGWI ACGGA 1 cut(s) 1060
TspRI CASTG 6 cut(s) 162, 183, 430, 611, 1093, 1195
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 5 cut(s) 347, 497, 813, 1367, 1460
XapI RAATTY 3 cut(s) 336, 635, 1481
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 2 cut(s) 522, 1456
XcmI CCANNNNNNNNNTGG 1 cut(s) 1470
XmiI GTMKAC 2 cut(s) 506, 785
XspI CTAG 1 cut(s) 641
ZrmI AGTACT 2 cut(s) 274, 436
Zsp2I ATGCAT 1 cut(s) 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.