Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308331.1

Orthogroup ID

OG0007153

Physical Location & Seq

Genomic Coordinates Forward (+)

17 .. 739

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgacttgggcctcgcccaaaggctcgatttcgatgaatcaatacccgaaaactgtttcctggattgcggtttcggtgggagggttggctatgtttctgctttttgcttcctgggttttagtttcgttcccaattggttccacggttcgggggtatttctatggtgttgatagtttgcagaaactggagttttccagctcttcagggaatccgattttggttgattcgttggttcctaacaatgtagttatgagtgacaaggatgcggtgtccgagtctagttctgataagaatgttggttccgactccaattcagaaggtcccacgagttcaaacagtccattggttgggtcagaagctaaagacctgccagatgtgccggtagttaatgagaatgttatatcagtgaaaccggttgatcaaccagtgccttctggttcgagtagttcttcagttggtgaaaatgtggaaacaactcctcagactttgtccaatggtaccaactcgcaagtgtccttgagtacaactcacaatgagagtgaagatgcagcaaaacctgctctcggatcatccaatgttactgaaatttctgtggggccggaacaaaatgatgctactacctcttcatctgattccaaatctggaagcaatccagcttcttctgatctgtccaatgatgcaagtactggttcagtcgatacaggtatctttttattttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007568 GO:0008150 GO:0008374 GO:0009987 GO:0010150 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071554 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

240

Amino Acids

24.73

Weight (kDa)

4.09

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25360 AT4G25360 AT5G51640
fragaria_vesca	FvH4_7g28200 FvH4_7g28200
malus_domestica	MD01G1185900.v1.1 MD07G1258100.v1.1
prunus_persica	Prupe.2G282500_v2.0.a1 Prupe.2G282500_v2.0.a1 Prupe.2G282500_v2.0.a1
pyrus_communis	pycom01g19760 pycom07g23110
rosa_chinensis	RchiOBHm_Chr1g0375151
rosa_laevigata	RLG00000026682
rosa_multiflora	Rmu_co8297061.1_g000001 Rmu_co8308331.1_g000001 Rmu_sc0000554.1_g000023 Rmu_sc0002456.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282970
rosa_rugosa	Rorug01G0388800
rosa_samantha	Rh1AG399400 Rh1BG365100 Rh1CG378000 Rh1DG395800
rosa_wichuraiana	Rw1G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	375, 565
Acc65I	GGTACC	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	347
AciI	CCGC	2 cut(s)	68, 266
AclWI	GGATC	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	585
AcuI	CTGAAG	2 cut(s)	186, 435
AfaI	GTAC	3 cut(s)	499, 523, 685
AfiI	CCNNNNNNNGG	3 cut(s)	147, 347, 563
AgeI	ACCGGT	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	333
AjnI	CCWGG	2 cut(s)	59, 110
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	3 cut(s)	198, 359, 656
AluI	AGCT	3 cut(s)	198, 359, 656
AlwI	GGATC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	9, 596
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	585
AsiGI	ACCGGT	1 cut(s)	412
Asp718I	GGTACC	1 cut(s)	497
AspS9I	GGNCC	3 cut(s)	9, 320, 596
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	560
BciT130I	CCWGG	2 cut(s)	61, 112
BclI	TGATCA	1 cut(s)	418
BfaI	CTAG	1 cut(s)	279
BfuAI	ACCTGC	2 cut(s)	375, 565
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	61, 112
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	3 cut(s)	9, 320, 596
BmiI	GGNNCC	6 cut(s)	139, 234, 301, 322, 499, 597
BmrFI	CCNGG	2 cut(s)	61, 112
BmsI	GCATC	4 cut(s)	253, 535, 601, 667
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	111, 141
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 347, 563
Bse118I	RCCGGY	2 cut(s)	379, 412
Bse1I	ACTGG	3 cut(s)	189, 425, 691
BseBI	CCWGG	2 cut(s)	61, 112
BseDI	CCNNGG	2 cut(s)	111, 141
BseGI	GGATG	2 cut(s)	268, 569
BseLI	CCNNNNNNNGG	3 cut(s)	147, 347, 563
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	3 cut(s)	189, 425, 691
BseRI	GAGGAG	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	560
BshFI	GGCC	2 cut(s)	11, 598
BshNI	GGYRCC	1 cut(s)	497
BshTI	ACCGGT	1 cut(s)	412
BsiSI	CCGG	3 cut(s)	380, 413, 599
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	3 cut(s)	147, 347, 563
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	11, 598
Bsp143I	GATC	3 cut(s)	418, 566, 664
BspACI	CCGC	2 cut(s)	68, 266
BspANI	GGCC	2 cut(s)	11, 598
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	6 cut(s)	139, 234, 301, 322, 499, 597
BspMI	ACCTGC	2 cut(s)	375, 565
BspPI	GGATC	1 cut(s)	574
BspQI	GCTCTTC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	497
BsrFI	RCCGGY	2 cut(s)	379, 412
BsrI	ACTGG	3 cut(s)	189, 425, 691
BssAI	RCCGGY	2 cut(s)	379, 412
BssECI	CCNNGG	2 cut(s)	111, 141
BssMI	GATC	3 cut(s)	418, 566, 664
BssSI	CACGAG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	61, 112
Bst4CI	ACNGT	3 cut(s)	55, 145, 338
Bst6I	CTCTTC	2 cut(s)	205, 628
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	268, 569
BstKTI	GATC	3 cut(s)	421, 569, 667
BstMBI	GATC	3 cut(s)	418, 566, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 557
BstNI	CCWGG	2 cut(s)	61, 112
BstSCI	CCNGG	2 cut(s)	59, 110
BstV1I	GCAGC	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	11, 598
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	268, 569
BtsIMutI	CAGTG	2 cut(s)	411, 432
BveI	ACCTGC	2 cut(s)	375, 565
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	379, 412
Cfr13I	GGNCC	3 cut(s)	9, 320, 596
Csp6I	GTAC	3 cut(s)	498, 522, 684
CspAI	ACCGGT	1 cut(s)	412
CviJI	RGCY	7 cut(s)	11, 24, 89, 198, 359, 598, 656
CviKI_1	RGCY	7 cut(s)	11, 24, 89, 198, 359, 598, 656
CviQI	GTAC	3 cut(s)	498, 522, 684
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	3 cut(s)	420, 568, 666
DpnII	GATC	3 cut(s)	418, 566, 664
Eam1104I	CTCTTC	2 cut(s)	205, 628
EarI	CTCTTC	2 cut(s)	205, 628
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	2 cut(s)	186, 435
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	59, 110
FaiI	YATR	4 cut(s)	92, 162, 251, 401
FaqI	GGGAC	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	2 cut(s)	275, 556
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	11, 598
HapII	CCGG	3 cut(s)	380, 413, 599
HinfI	GANTC	6 cut(s)	37, 208, 224, 275, 305, 632
HpaII	CCGG	3 cut(s)	380, 413, 599
HphI	GGTGA	1 cut(s)	470
Hpy188III	TCNNGA	1 cut(s)	642
HpyAV	CCTTC	2 cut(s)	311, 441
HpyCH4III	ACNGT	3 cut(s)	55, 145, 338
HpyCH4V	TGCA	3 cut(s)	178, 548, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 557
HpyF3I	CTNAG	1 cut(s)	480
KpnI	GGTACC	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	418, 566, 664
LguI	GCTCTTC	1 cut(s)	205
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	4 cut(s)	253, 535, 601, 667
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	254, 577
MalI	GATC	3 cut(s)	420, 568, 666
MboI	GATC	3 cut(s)	418, 566, 664
MboII	GAAGA	5 cut(s)	192, 441, 554, 615, 651
MfeI	CAATTG	1 cut(s)	132
MluCI	AATT	3 cut(s)	132, 310, 585
MlyI	GAGTC	2 cut(s)	284, 299
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	4 cut(s)	22, 74, 489, 631
MseI	TTAA	2 cut(s)	387, 721
MspI	CCGG	3 cut(s)	380, 413, 599
MspR9I	CCNGG	2 cut(s)	61, 112
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	2 cut(s)	61, 112
MwoI	GCNNNNNNNGC	2 cut(s)	376, 557
NdeII	GATC	3 cut(s)	418, 566, 664
NlaIV	GGNNCC	6 cut(s)	139, 234, 301, 322, 499, 597
NmuCI	GTSAC	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	205
PfeI	GAWTC	4 cut(s)	37, 208, 224, 632
PflFI	GACNNNGTC	1 cut(s)	487
PflMI	CCANNNNNTGG	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	2 cut(s)	283, 299
PpsI	GAGTC	2 cut(s)	283, 299
PpuMI	RGGWCCY	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	59, 110
PspGI	CCWGG	2 cut(s)	59, 110
PspN4I	GGNNCC	6 cut(s)	139, 234, 301, 322, 499, 597
PspPI	GGNCC	3 cut(s)	9, 320, 596
PspPPI	RGGWCCY	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	487
RsaI	GTAC	3 cut(s)	499, 523, 685
RsaNI	GTAC	3 cut(s)	498, 522, 684
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	387, 721
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	3 cut(s)	418, 566, 664
Sau96I	GGNCC	3 cut(s)	9, 320, 596
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	2 cut(s)	284, 299
ScrFI	CCNGG	2 cut(s)	61, 112
SetI	ASST	8 cut(s)	200, 322, 361, 369, 559, 623, 658, 706
SfaNI	GCATC	4 cut(s)	253, 535, 601, 667
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	3 cut(s)	132, 310, 585
SsiI	CCGC	2 cut(s)	68, 266
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	59, 110
TaaI	ACNGT	3 cut(s)	55, 145, 338
TaqI	TCGA	4 cut(s)	26, 32, 440, 696
TasI	AATT	3 cut(s)	132, 310, 585
TatI	WGTACW	2 cut(s)	521, 683
TfiI	GAWTC	4 cut(s)	37, 208, 224, 632
Tru1I	TTAA	2 cut(s)	387, 721
Tru9I	TTAA	2 cut(s)	387, 721
TscAI	CASTG	2 cut(s)	411, 432
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	50, 615
TspRI	CASTG	2 cut(s)	411, 432
Tth111I	GACNNNGTC	1 cut(s)	487
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	585
XspI	CTAG	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.