AT5G52340

Exocyst complex component EXO70A1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
21250646 .. 21254137
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52340.1

Sequence Viewer

Length: 1896 bp
ATGGGGGTGGCTCAAGCAATGGAAGCCCTAACCGAGCGAGCAAGTTTGATGAAAGAGTCTTTGCATAAGAGCCAGACCATCACCGATAACATGGTCGGAATCTTAGGTTCTTTCGATCATCGTCTCTCGGCTCTTGAAACCGCAATGCGTCCCACACAGATAAGAACACATTCTATAAGGAGAGCTCATGAGAATATTGACAAGGCATTGAAAGCAGCTGAGGTTATATTGGATCAATTTGATATCTCTAGAAAGGCGGAAGCTAAAATATTGAGAGGACCACATGAGGATCTTGAAAGCTATCTGGAAGCAATTGATCAACTAAGAGGCACTATCAAATTCTTCAGCAACAACAAAATGTTCAAAAGTGCTAGTGGAGTTATTAGTCATGCTCACGGTTTACTTTCTAAAGCTCTATCAAAGCTAGAAGATGAGTTCAGACAGATACTGCAAAACTACAGTAAGCCAATGGAACCTGATCGCCTTTTCGAATGTCTTCCGAGTAATCTTCGACCATCATCAGAAGGTGAAGGTGGTGGTGGAAAGACTCATGATCCCCATCACAAGAGCTTAGAAAACGCTATTTTTACTGTCCCAACTGTCATTCCTCCAAGGGTTCTGCCTCTGCTTCATGACTTAGCTCAACAAATGGTTCAAGCTGGTCATCAGCAACAACTTTTCAAATCTTACAGGGATACTCGAGCTGCGGTGTTGGAACAGAGTTTGAGGAAATTAGGAGTGGAGAGGCTTAGCAAAGATGATGTTCAGAGAATGCAATGGGAGGTATTAGAGGCCAAGATTGGGAATTGGATACATTACATGAGAATATCCGTGAAACTGTTATTCGCCGCGGAAAAGAAAATCTGCGACCAAATTCTTGATGGTGTTGAGTCTCTCAGAGATCAATGTTTTGGTGAGGTCACTGTAAATAGTGTAGCTGTGCTGCTTAGTTTCGGGGAGGCTATTGCTAAAAGCAAGAGATCACCTGAAAAACTGTTTGTTCTGTTAGATATGTATGAAATAATGAGAGAGCTTCAGCCTGAGATTGAGTTGCTCTTTGGAAGCAAACCATGTGCTGAGATGAAAGAATCCGCGCTGAATCTGACAAAGCGGTTAGCTCAGACAGCTCAAGAAACTTTTGCTGATTTTGAAGAAGCGGTTGAAAAGGATGCTACGAAAACCGCGGTTATGGATGGAACCGTTCATCCACTTACTAGCTACGTTATAAATTATGTCAAGTTCTTGTTCGATTACCAAACGACGTTGAGGCTACTTTTTCAAGAGTTTGATAGTAAAGATCCTGATAGCGAGCTTGGAGCTGTAACAACGAGGATCATGCACGCTTTACAGAATAATCTGGATGGTAAATCGAAGCAGTACAAAGATGTAGCATTAACTCAACTTTTCCTAATGAACAATGTTCACTATATAGTGAGATCTGTTAGGAGGTCAGAAGCAAAAGATTTATTAGGTGATGATTGGGTTCAAATACATCGAAGAATTGTACAACAACATGCAAATCAGTACAAGAGAGTTTCTTGGGCAAAGATTTTGCAGTGTCTCACGGTTCAGTCGAGTGGGAGCGGTCCGATAGAAAACTCAAATATATCAAGAGCATCAGTAAAAGACAGATTCAAGACTTTCAATTCTCAGTTTGAAGAGCTTCACCAAAGACAATGCCAATGGACAGTTCCGGACAGCGAGTTGCGTGAATCTCTTAGACTTGCTGTTGCGGAAGTTCTTTTACCTGCTTTCAGATCGTTTCTTAAACGTTTTGGGCCGATGATAGAGAGTGGTAAGAACCCCCAGAAGTATATAAGGTTTAGTCCTGAAGATCTTGAGAGAATGCTTAACGAGTTCTTTGAAGGCAAGACATGGAGTGAGCCAAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

631

Amino Acids

72.08

Weight (kDa)

7.7

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_N PF20669 69 - 151 3.1e-22 Exocyst complex component Exo70 N-terminal
Exo70_C PF03081 269 - 619 1.8e-125 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1226
Acc36I ACCTGC 1 cut(s) 1756
AccBSI CCGCTC 1 cut(s) 1584
AccII CGCG 3 cut(s) 851, 1094, 1184
AccIII TCCGGA 1 cut(s) 1693
AclI AACGTT 1 cut(s) 1771
AclWI GGATC 5 cut(s) 240, 297, 548, 1292, 1340
AcsI RAATTY 2 cut(s) 338, 873
AcuI CTGAAG 3 cut(s) 328, 1019, 1851
AfaI GTAC 3 cut(s) 1379, 1506, 1526
AfiI CCNNNNNNNGG 1 cut(s) 801
AjuI GAANNNNNNNTTGG 2 cut(s) 1674, 1706
AloI GAACNNNNNNTCC 2 cut(s) 1189, 1221
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 3 cut(s) 128, 897, 1565
AlwI GGATC 5 cut(s) 240, 297, 548, 1292, 1340
AlwNI CAGNNNCTG 1 cut(s) 448
Ama87I CYCGRG 1 cut(s) 699
Aor13HI TCCGGA 1 cut(s) 1693
AoxI GGCC 2 cut(s) 792, 1778
ApeKI GCWGC 3 cut(s) 215, 704, 943
ApoI RAATTY 2 cut(s) 338, 873
Asp700I GAANNNNTTC 3 cut(s) 169, 495, 1662
AspLEI GCGC 1 cut(s) 1096
AspS9I GGNCC 3 cut(s) 278, 1586, 1778
AsuHPI GGTGA 6 cut(s) 73, 539, 926, 975, 1484, 1658
AsuII TTCGAA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 699
AvaII GGWCC 2 cut(s) 278, 1586
BanII GRGCYC 1 cut(s) 187
BarI GAAGNNNNNNTAC 2 cut(s) 1728, 1760
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 187
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 3 cut(s) 227, 691, 930
BccI CCATC 6 cut(s) 86, 523, 567, 875, 1187, 1355
BcgI CGANNNNNNTGC 2 cut(s) 1318, 1352
BciVI GTATCC 2 cut(s) 688, 804
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 3 cut(s) 128, 897, 1565
BfaI CTAG 4 cut(s) 249, 372, 425, 1215
BfmI CTRYAG 1 cut(s) 457
BfuAI ACCTGC 1 cut(s) 1756
BfuI GTATCC 2 cut(s) 688, 804
BglII AGATCT 2 cut(s) 1436, 1834
BisI GCNGC 4 cut(s) 216, 705, 849, 944
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 4 cut(s) 217, 706, 850, 945
Bme18I GGWCC 2 cut(s) 278, 1586
BmeT110I CYCGRG 1 cut(s) 699
BmgT120I GGNCC 3 cut(s) 278, 1586, 1778
BmiI GGNNCC 2 cut(s) 474, 1198
BmsI GCATC 2 cut(s) 1159, 1625
BpiI GAAGAC 1 cut(s) 488
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 749
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 2 cut(s) 1113, 1859
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 3 cut(s) 611, 849, 1182
BsaWI WCCGGW 1 cut(s) 1693
Bsc4I CCNNNNNNNGG 1 cut(s) 801
Bse3DI GCAATG 3 cut(s) 24, 150, 782
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 1693
BseDI CCNNGG 3 cut(s) 611, 849, 1182
BseGI GGATG 4 cut(s) 1174, 1198, 1204, 1366
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 801
BseMI GCAATG 3 cut(s) 24, 150, 782
BseMII CTCAG 6 cut(s) 210, 910, 1032, 1068, 1133, 1664
BseXI GCAGC 3 cut(s) 227, 691, 930
Bsh1236I CGCG 3 cut(s) 851, 1094, 1184
BshFI GGCC 2 cut(s) 794, 1780
BsiHKAI GWGCWC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 699
BsiSI CCGG 1 cut(s) 1694
BslFI GGGAC 2 cut(s) 135, 578
BslI CCNNNNNNNGG 1 cut(s) 801
BsmAI GTCTC 3 cut(s) 128, 897, 1565
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 2 cut(s) 135, 578
BsmI GAATGC 2 cut(s) 777, 1851
BsnI GGCC 2 cut(s) 794, 1780
BsoBI CYCGRG 1 cut(s) 699
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 1693
Bsp1407I TGTACA 1 cut(s) 1504
Bsp1720I GCTNAGC 1 cut(s) 749
BspANI GGCC 2 cut(s) 794, 1780
BspCNI CTCAG 6 cut(s) 211, 909, 1033, 1069, 1132, 1663
BspEI TCCGGA 1 cut(s) 1693
BspFNI CGCG 3 cut(s) 851, 1094, 1184
BspHI TCATGA 3 cut(s) 187, 550, 631
BspLI GGNNCC 2 cut(s) 474, 1198
BspMI ACCTGC 1 cut(s) 1756
BspPI GGATC 5 cut(s) 240, 297, 548, 1292, 1340
BspQI GCTCTTC 1 cut(s) 1653
BspT104I TTCGAA 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 1584
BsrDI GCAATG 3 cut(s) 24, 150, 782
BsrGI TGTACA 1 cut(s) 1504
BssECI CCNNGG 3 cut(s) 611, 849, 1182
BssT1I CCWWGG 1 cut(s) 611
Bst6I CTCTTC 1 cut(s) 1653
BstAUI TGTACA 1 cut(s) 1504
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 39, 1310, 1341
BstDSI CCRYGG 2 cut(s) 849, 1182
BstF5I GGATG 4 cut(s) 1174, 1198, 1204, 1366
BstFNI CGCG 3 cut(s) 851, 1094, 1184
BstHHI GCGC 1 cut(s) 1096
BstMAI GTCTC 3 cut(s) 128, 897, 1565
BstMWI GCNNNNNNNGC 3 cut(s) 23, 212, 1124
BstNSI RCATGY 1 cut(s) 1517
BstSFI CTRYAG 1 cut(s) 457
BstUI CGCG 3 cut(s) 851, 1094, 1184
BstV1I GCAGC 3 cut(s) 227, 691, 930
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 4 cut(s) 289, 1297, 1436, 1834
BstYI RGATCY 4 cut(s) 289, 1297, 1436, 1834
BsuI GTATCC 2 cut(s) 688, 804
BsuRI GGCC 2 cut(s) 794, 1780
BtgI CCRYGG 2 cut(s) 849, 1182
BtsCI GGATG 4 cut(s) 1174, 1198, 1204, 1366
BtsI GCAGTG 1 cut(s) 1562
BtsIMutI CAGTG 2 cut(s) 921, 1562
BveI ACCTGC 1 cut(s) 1756
Cac8I GCNNGC 3 cut(s) 39, 1310, 1341
CaiI CAGNNNCTG 1 cut(s) 448
CciI TCATGA 3 cut(s) 187, 550, 631
CfoI GCGC 1 cut(s) 1096
Cfr13I GGNCC 3 cut(s) 278, 1586, 1778
Cfr42I CCGCGG 2 cut(s) 852, 1185
CpoI CGGWCCG 1 cut(s) 1586
CseI GACGC 1 cut(s) 137
Csp6I GTAC 3 cut(s) 1378, 1505, 1525
CspI CGGWCCG 1 cut(s) 1586
CviQI GTAC 3 cut(s) 1378, 1505, 1525
Eam1104I CTCTTC 1 cut(s) 1653
EarI CTCTTC 1 cut(s) 1653
EciI GGCGGA 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 187
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 278, 1586
Eco53kI GAGCTC 1 cut(s) 185
Eco57I CTGAAG 3 cut(s) 328, 1019, 1851
Eco88I CYCGRG 1 cut(s) 699
EcoICRI GAGCTC 1 cut(s) 185
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 611
Esp3I CGTCTC 1 cut(s) 128
FaqI GGGAC 2 cut(s) 135, 578
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 4 cut(s) 216, 705, 849, 944
FokI GGATG 4 cut(s) 1181, 1191, 1205, 1373
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 4 cut(s) 216, 705, 849, 944
FspBI CTAG 4 cut(s) 249, 372, 425, 1215
GlaI GCGC 1 cut(s) 1095
GluI GCNGC 4 cut(s) 216, 705, 849, 944
HaeIII GGCC 2 cut(s) 794, 1780
HapII CCGG 1 cut(s) 1694
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 1096
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HinfI GANTC 8 cut(s) 56, 99, 547, 890, 1088, 1099, 1632, 1712
HpaII CCGG 1 cut(s) 1694
HphI GGTGA 6 cut(s) 73, 539, 926, 975, 1484, 1658
Hpy166II GTNNAC 2 cut(s) 401, 1423
Hpy8I GTNNAC 2 cut(s) 401, 1423
Hpy99I CGWCG 1 cut(s) 1264
HpyAV CCTTC 3 cut(s) 518, 524, 1859
HpyCH4IV ACGT 3 cut(s) 1221, 1262, 1771
HpyCH4V TGCA 6 cut(s) 64, 451, 775, 1339, 1517, 1555
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 212, 1124
HpySE526I ACGT 3 cut(s) 1221, 1262, 1771
HspAI GCGC 1 cut(s) 1094
Kpn2I TCCGGA 1 cut(s) 1693
Ksp22I TGATCA 1 cut(s) 316
KspI CCGCGG 2 cut(s) 852, 1185
LguI GCTCTTC 1 cut(s) 1653
LmnI GCTCC 2 cut(s) 1316, 1581
Lsp1109I GCAGC 3 cut(s) 227, 691, 930
LweI GCATC 2 cut(s) 1159, 1625
MaeI CTAG 4 cut(s) 249, 372, 425, 1215
MaeII ACGT 3 cut(s) 1221, 1262, 1771
MaeIII GTNAC 2 cut(s) 919, 1321
MbiI CCGCTC 1 cut(s) 1584
MboII GAAGA 8 cut(s) 334, 440, 488, 500, 1163, 1509, 1670, 1844
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 4 cut(s) 289, 1297, 1436, 1834
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 9 cut(s) 236, 312, 338, 731, 805, 873, 1228, 1500, 1645
MlyI GAGTC 3 cut(s) 65, 541, 899
MmeI TCCRAC 2 cut(s) 76, 693
MroI TCCGGA 1 cut(s) 1693
MroXI GAANNNNTTC 3 cut(s) 169, 495, 1662
MseI TTAA 3 cut(s) 1394, 1767, 1851
MspA1I CMGCKG 3 cut(s) 218, 851, 1184
MspI CCGG 1 cut(s) 1694
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 2 cut(s) 777, 1851
MvnI CGCG 3 cut(s) 851, 1094, 1184
MwoI GCNNNNNNNGC 3 cut(s) 23, 212, 1124
NlaIV GGNNCC 2 cut(s) 474, 1198
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 919
NspI RCATGY 1 cut(s) 1517
NspV TTCGAA 1 cut(s) 489
PaeR7I CTCGAG 1 cut(s) 699
PagI TCATGA 3 cut(s) 187, 550, 631
PciSI GCTCTTC 1 cut(s) 1653
PcsI WCGNNNNNNNCGW 1 cut(s) 1571
PctI GAATGC 2 cut(s) 777, 1851
PdmI GAANNNNTTC 3 cut(s) 169, 495, 1662
PfeI GAWTC 5 cut(s) 99, 1088, 1099, 1632, 1712
PkrI GCNGC 4 cut(s) 217, 706, 850, 945
PleI GAGTC 3 cut(s) 64, 541, 898
PpsI GAGTC 3 cut(s) 64, 541, 898
PsiI TTATAA 1 cut(s) 1226
Psp124BI GAGCTC 1 cut(s) 187
Psp1406I AACGTT 1 cut(s) 1771
PspN4I GGNNCC 2 cut(s) 474, 1198
PspPI GGNCC 3 cut(s) 278, 1586, 1778
PspXI VCTCGAGB 1 cut(s) 699
PstNI CAGNNNCTG 1 cut(s) 448
PsuI RGATCY 4 cut(s) 289, 1297, 1436, 1834
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 1379, 1506, 1526
RsaNI GTAC 3 cut(s) 1378, 1505, 1525
Rsr2I CGGWCCG 1 cut(s) 1586
RsrII CGGWCCG 1 cut(s) 1586
SacI GAGCTC 1 cut(s) 187
SacII CCGCGG 2 cut(s) 852, 1185
SapI GCTCTTC 1 cut(s) 1653
SaqAI TTAA 3 cut(s) 1394, 1767, 1851
SatI GCNGC 4 cut(s) 216, 705, 849, 944
Sau96I GGNCC 3 cut(s) 278, 1586, 1778
SchI GAGTC 3 cut(s) 65, 541, 899
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 2 cut(s) 1159, 1625
SfcI CTRYAG 1 cut(s) 457
Sfr274I CTCGAG 1 cut(s) 699
Sfr303I CCGCGG 2 cut(s) 852, 1185
SfuI TTCGAA 1 cut(s) 489
SgrBI CCGCGG 2 cut(s) 852, 1185
SinI GGWCC 2 cut(s) 278, 1586
SlaI CTCGAG 1 cut(s) 699
SmlI CTYRAG 4 cut(s) 12, 699, 1128, 1838
SmoI CTYRAG 4 cut(s) 12, 699, 1128, 1838
Sse9I AATT 9 cut(s) 236, 312, 338, 731, 805, 873, 1228, 1500, 1645
SspI AATATT 2 cut(s) 196, 270
SspMI CTAG 4 cut(s) 249, 372, 425, 1215
SstI GAGCTC 1 cut(s) 187
StyI CCWWGG 1 cut(s) 611
TaiI ACGT 3 cut(s) 1224, 1265, 1774
TaqI TCGA 8 cut(s) 114, 489, 511, 700, 1248, 1370, 1495, 1574
TasI AATT 9 cut(s) 236, 312, 338, 731, 805, 873, 1228, 1500, 1645
TatI WGTACW 3 cut(s) 1377, 1504, 1524
TauI GCSGC 1 cut(s) 851
TfiI GAWTC 5 cut(s) 99, 1088, 1099, 1632, 1712
Tru1I TTAA 3 cut(s) 1394, 1767, 1851
Tru9I TTAA 3 cut(s) 1394, 1767, 1851
TscAI CASTG 2 cut(s) 928, 1562
TseFI GTSAC 1 cut(s) 919
TseI GCWGC 3 cut(s) 215, 704, 943
Tsp45I GTSAC 1 cut(s) 919
TspDTI ATGAA 6 cut(s) 65, 620, 1032, 1097, 1193, 1427
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 2 cut(s) 928, 1562
VpaK11BI GGWCC 2 cut(s) 278, 1586
XapI RAATTY 2 cut(s) 338, 873
XbaI TCTAGA 1 cut(s) 248
XceI RCATGY 1 cut(s) 1517
XcmI CCANNNNNNNNNTGG 1 cut(s) 878
XhoI CTCGAG 1 cut(s) 699
XmnI GAANNNNTTC 3 cut(s) 169, 495, 1662
XspI CTAG 4 cut(s) 249, 372, 425, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.