Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008294

Physical Location & Seq

Genomic Coordinates Reverse (-)

3131926 .. 3135030

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCTCCTCAGTTTTGGGGAGGCTATTGCCAGAAGCAAGAGGTCACCTGAAAAGTTATTTGTTCTTTTAGACATGTATGAGATAATGAGAGACCTTGAGTCAGAGATTGAGTTACTTTTTGGAAGTAAAGCTTGCATGGAAATGCGGGAATCTGCAGTAAGTTTGACAAAGCGTCTAGCTCAAACAGCCCAGGAAACTTTTGGTGATTTTGAAGAAGCTGTTGAAAAGGATGCCACAAAAACTGCTGTTCTTGATGGAACCGTCCATCCTTTGACAAGCTATGTGATAAACTATGTAAAGTTTCTTTTCGATTATCAGTCTACACTGAAGCAACTTTTTCAAGAGTTTGATGAAGGTGAGCCAGAGTCTCAGTTATCAAAGGTTACTACAAGGATTATGCAGGCTCTTCAGAACAACCTGGATGGAAAATCTAAGCAGTATAAAGATCCTGCACTCACTCAGTTATTTCTCATGAACAACATTCACTATATAGTGAGATCCGTGCGGAGGTCAGAAGCAAAGGATTTGTTGGGGGATGACTGGGTGCAGATACACAGATCGATTGTCCAGATCGTGCAGCAGCATGCAAATCAGTATAAGAGGGTTTCTTGGGCAAAGATTCTGCAGTGCCTTACCGTTCAGGGCGGAAATCCATCAGGTGGTGATAGCAGTTCACTTTCAAGAGCAATGGTGAAAGATCGGTTCAAGACCTTCAACATGCAGTTTGAGGAGCTTCATCAAAGGCAATCTCAGTGGACAGTTCCTGACAGTGAATTGCGAGAGTCTTTAAGGCTAGCTGTTGCTGAAATCCTCTTGCCTGCTTACAGATCATTCATCAAACGTTTCGGGCCTATGGTCGAGAACGGAAAAAACCCGGGGAAGTATATAAAGCTACGTCCGGAGAATATTGAGTCAATGCTGAATGAATTTTTCGAGAGTAAGTCGTGGGGAGAACAGAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0005886 GO:0008150 GO:0009894 GO:0010506 GO:0015630 GO:0016020 GO:0016241 GO:0019222 GO:0031323 GO:0031329 GO:0034451 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043900 GO:0043903 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0071944 GO:2000535

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

322

Amino Acids

37.06

Weight (kDa)

6.99

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52340
fragaria_vesca	FvH4_6g20230 FvH4_6g20230 FvH4_6g20230 FvH4_6g20230 FvH4_6g20230 FvH4_6g20230
malus_domestica	MD12G1039500.v1.1 MD14G1038200.v1.1
prunus_persica	Prupe.7G096000_v2.0.a1
pyrus_communis	pycom12g03360 pycom14g03300
rosa_chinensis	RchiOBHm_Chr3g0475801
rosa_laevigata	RLG00000023812 RLG00000023816
rosa_multiflora	Rmu_sc0000539.1_g000084
rosa_roxburghii	Rroxscaffold_6G00405870
rosa_rugosa	Rorug03G0151700
rosa_samantha	Rh3AG201300 Rh3BG231600 Rh3CG226400 Rh3DG226900
rosa_wichuraiana	Rw3G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	898
AciI	CCGC	3 cut(s)	145, 505, 645
AclI	AACGTT	1 cut(s)	841
AclWI	GGATC	2 cut(s)	440, 492
AcsI	RAATTY	1 cut(s)	926
AcuI	CTGAAG	2 cut(s)	347, 392
AfiI	CCNNNNNNNGG	2 cut(s)	507, 659
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	6 cut(s)	212, 224, 341, 681, 706, 715
AhdI	GACNNNNNGTC	2 cut(s)	97, 171
AjnI	CCWGG	2 cut(s)	189, 417
AloI	GAACNNNNNNTCC	2 cut(s)	250, 282
AluBI	AGCT	7 cut(s)	131, 179, 218, 279, 733, 797, 892
AluI	AGCT	7 cut(s)	131, 179, 218, 279, 733, 797, 892
Alw26I	GTCTC	2 cut(s)	84, 372
AlwI	GGATC	2 cut(s)	440, 492
AlwNI	CAGNNNCTG	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	874
Aor13HI	TCCGGA	1 cut(s)	898
AoxI	GGCC	1 cut(s)	848
ApeKI	GCWGC	2 cut(s)	577, 580
ApoI	RAATTY	1 cut(s)	926
AspS9I	GGNCC	1 cut(s)	848
AsuC2I	CCSGG	2 cut(s)	875, 876
AsuHPI	GGTGA	5 cut(s)	36, 215, 368, 674, 703
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	1 cut(s)	874
BbvI	GCAGC	2 cut(s)	589, 592
BccI	CCATC	4 cut(s)	248, 273, 416, 661
BciT130I	CCWGG	2 cut(s)	191, 419
BcnI	CCSGG	2 cut(s)	875, 876
BcoDI	GTCTC	2 cut(s)	84, 372
BfaI	CTAG	2 cut(s)	176, 794
BfmI	CTRYAG	2 cut(s)	153, 623
BisI	GCNGC	2 cut(s)	578, 581
BlsI	GCNGC	2 cut(s)	579, 582
Bme1390I	CCNGG	4 cut(s)	191, 419, 875, 876
BmeRI	GACNNNNNGTC	2 cut(s)	97, 171
BmeT110I	CYCGRG	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	848
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	4 cut(s)	191, 419, 875, 876
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	220
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	2 cut(s)	875, 876
Bsa29I	ATCGAT	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	189, 874, 875
BsaWI	WCCGGW	1 cut(s)	898
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 659
Bse1I	ACTGG	1 cut(s)	545
Bse3DI	GCAATG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	898
BseBI	CCWGG	2 cut(s)	191, 419
BseCI	ATCGAT	1 cut(s)	560
BseDI	CCNNGG	3 cut(s)	189, 874, 875
BseGI	GGATG	4 cut(s)	235, 265, 427, 541
BseLI	CCNNNNNNNGG	2 cut(s)	507, 659
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	4 cut(s)	22, 383, 473, 764
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	1 cut(s)	743
BseXI	GCAGC	2 cut(s)	589, 592
BsgI	GTGCAG	3 cut(s)	435, 566, 596
BshFI	GGCC	1 cut(s)	850
BshVI	ATCGAT	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	874
BsiSI	CCGG	2 cut(s)	875, 899
BslI	CCNNNNNNNGG	2 cut(s)	507, 659
BsmAI	GTCTC	2 cut(s)	84, 372
BsnI	GGCC	1 cut(s)	850
Bso31I	GGTCTC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	874
Bsp13I	TCCGGA	1 cut(s)	898
Bsp143I	GATC	6 cut(s)	445, 497, 557, 570, 697, 827
BspACI	CCGC	3 cut(s)	145, 505, 645
BspANI	GGCC	1 cut(s)	850
BspCNI	CTCAG	4 cut(s)	21, 382, 472, 763
BspDI	ATCGAT	1 cut(s)	560
BspEI	TCCGGA	1 cut(s)	898
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	259
BspMAI	CTGCAG	2 cut(s)	157, 627
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	2 cut(s)	440, 492
BspQI	GCTCTTC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	545
BssECI	CCNNGG	3 cut(s)	189, 874, 875
BssMI	GATC	6 cut(s)	445, 497, 557, 570, 697, 827
Bst2UI	CCWGG	2 cut(s)	191, 419
Bst4CI	ACNGT	4 cut(s)	262, 637, 760, 770
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	5 cut(s)	133, 402, 585, 795, 819
BstDEI	CTNAG	5 cut(s)	8, 369, 432, 459, 750
BstEII	GGTNACC	1 cut(s)	42
BstF5I	GGATG	4 cut(s)	235, 265, 427, 541
BstKTI	GATC	6 cut(s)	448, 500, 560, 573, 700, 830
BstMAI	GTCTC	2 cut(s)	84, 372
BstMBI	GATC	6 cut(s)	445, 497, 557, 570, 697, 827
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	2 cut(s)	191, 419
BstNSI	RCATGY	3 cut(s)	76, 587, 721
BstPI	GGTNACC	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	189, 417, 873, 874
BstSFI	CTRYAG	2 cut(s)	153, 623
BstV1I	GCAGC	2 cut(s)	589, 592
BstX2I	RGATCY	2 cut(s)	445, 497
BstYI	RGATCY	2 cut(s)	445, 497
Bsu15I	ATCGAT	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	850
BsuTUI	ATCGAT	1 cut(s)	560
BtsCI	GGATG	4 cut(s)	235, 265, 427, 541
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	4 cut(s)	323, 632, 758, 775
Cac8I	GCNNGC	5 cut(s)	133, 402, 585, 795, 819
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	848
Cfr9I	CCCGGG	1 cut(s)	874
ClaI	ATCGAT	1 cut(s)	560
CseI	GACGC	1 cut(s)	161
CspCI	CAANNNNNGTGG	2 cut(s)	734, 769
CviAII	CATG	5 cut(s)	73, 136, 472, 584, 718
DdeI	CTNAG	5 cut(s)	8, 369, 432, 459, 750
DpnI	GATC	6 cut(s)	447, 499, 559, 572, 699, 829
DpnII	GATC	6 cut(s)	445, 497, 557, 570, 697, 827
DriI	GACNNNNNGTC	2 cut(s)	97, 171
Eam1104I	CTCTTC	1 cut(s)	411
Eam1105I	GACNNNNNGTC	2 cut(s)	97, 171
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	347, 392
Eco88I	CYCGRG	1 cut(s)	874
Eco91I	GGTNACC	1 cut(s)	42
EcoO65I	GGTNACC	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	189, 417
FaeI	CATG	5 cut(s)	76, 139, 475, 587, 721
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FatI	CATG	5 cut(s)	72, 135, 471, 583, 717
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	578, 581
FokI	GGATG	4 cut(s)	242, 252, 434, 548
Fsp4HI	GCNGC	2 cut(s)	578, 581
FspBI	CTAG	2 cut(s)	176, 794
GluI	GCNGC	2 cut(s)	578, 581
HaeIII	GGCC	1 cut(s)	850
HapII	CCGG	2 cut(s)	875, 899
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	76, 139, 475, 587, 721
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	6 cut(s)	98, 149, 365, 619, 782, 911
HpaII	CCGG	2 cut(s)	875, 899
HphI	GGTGA	5 cut(s)	36, 215, 368, 674, 703
Hpy166II	GTNNAC	3 cut(s)	321, 674, 756
Hpy188I	TCNGA	3 cut(s)	103, 411, 514
Hpy8I	GTNNAC	3 cut(s)	321, 674, 756
HpyAV	CCTTC	2 cut(s)	347, 721
HpyCH4III	ACNGT	4 cut(s)	262, 637, 760, 770
HpyCH4IV	ACGT	2 cut(s)	841, 895
HpyCH4V	TGCA	9 cut(s)	135, 155, 400, 452, 547, 577, 587, 625, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	5 cut(s)	8, 369, 432, 459, 750
HpySE526I	ACGT	2 cut(s)	841, 895
Hsp92II	CATG	5 cut(s)	76, 139, 475, 587, 721
Kpn2I	TCCGGA	1 cut(s)	898
Kzo9I	GATC	6 cut(s)	445, 497, 557, 570, 697, 827
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	9, 730
Lsp1109I	GCAGC	2 cut(s)	589, 592
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	176, 794
MaeII	ACGT	2 cut(s)	841, 895
MaeIII	GTNAC	3 cut(s)	42, 111, 382
MalI	GATC	6 cut(s)	447, 499, 559, 572, 699, 829
MboI	GATC	6 cut(s)	445, 497, 557, 570, 697, 827
MboII	GAAGA	2 cut(s)	224, 398
MflI	RGATCY	2 cut(s)	445, 497
MluCI	AATT	2 cut(s)	773, 926
MlyI	GAGTC	4 cut(s)	107, 374, 791, 920
MnlI	CCTC	7 cut(s)	13, 17, 33, 501, 594, 721, 821
MroI	TCCGGA	1 cut(s)	898
MseI	TTAA	1 cut(s)	788
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	2 cut(s)	875, 899
MspR9I	CCNGG	4 cut(s)	191, 419, 875, 876
MvaI	CCWGG	2 cut(s)	191, 419
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	2 cut(s)	875, 876
NdeII	GATC	6 cut(s)	445, 497, 557, 570, 697, 827
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	5 cut(s)	76, 139, 475, 587, 721
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	42
NspI	RCATGY	3 cut(s)	76, 587, 721
PaeI	GCATGC	1 cut(s)	587
PagI	TCATGA	1 cut(s)	471
PciI	ACATGT	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	149, 619
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	2 cut(s)	579, 582
PleI	GAGTC	4 cut(s)	106, 373, 790, 919
PpsI	GAGTC	4 cut(s)	106, 373, 790, 919
PscI	ACATGT	1 cut(s)	72
Psp1406I	AACGTT	1 cut(s)	841
Psp6I	CCWGG	2 cut(s)	189, 417
PspEI	GGTNACC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	189, 417
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	848
PstI	CTGCAG	2 cut(s)	157, 627
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	445, 497
RseI	CAYNNNNRTG	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	788
SatI	GCNGC	2 cut(s)	578, 581
Sau3AI	GATC	6 cut(s)	445, 497, 557, 570, 697, 827
Sau96I	GGNCC	1 cut(s)	848
SchI	GAGTC	4 cut(s)	107, 374, 791, 920
ScrFI	CCNGG	4 cut(s)	191, 419, 875, 876
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	153, 623
SmaI	CCCGGG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	587
Sse9I	AATT	2 cut(s)	773, 926
SsiI	CCGC	3 cut(s)	145, 505, 645
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	2 cut(s)	176, 794
StyD4I	CCNGG	4 cut(s)	189, 417, 873, 874
TaaI	ACNGT	4 cut(s)	262, 637, 760, 770
TaiI	ACGT	2 cut(s)	844, 898
TaqI	TCGA	4 cut(s)	309, 560, 858, 933
TasI	AATT	2 cut(s)	773, 926
TfiI	GAWTC	2 cut(s)	149, 619
Tru1I	TTAA	1 cut(s)	788
Tru9I	TTAA	1 cut(s)	788
TscAI	CASTG	4 cut(s)	330, 632, 758, 775
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	2 cut(s)	577, 580
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	5 cut(s)	366, 488, 725, 823, 939
TspGWI	ACGGA	2 cut(s)	490, 879
TspMI	CCCGGG	1 cut(s)	874
TspRI	CASTG	4 cut(s)	330, 632, 758, 775
Van91I	CCANNNNNTGG	1 cut(s)	659
XapI	RAATTY	1 cut(s)	926
XceI	RCATGY	3 cut(s)	76, 587, 721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmaI	CCCGGG	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	320
XspI	CTAG	2 cut(s)	176, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.