Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008294

Physical Location & Seq

Genomic Coordinates Reverse (-)

2632259 .. 2635243

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTATGAGATAATGAGAGAACTTCAGTCAGAGATTGAATTCCTTTTTGGAAGTAAAGCTTGCATGGAAATGCGGGAATCTGCATTAAGTTTGACAAAGCGTCTAGCTCAAACAGCGCAGGAAACTTTTGGTGATTTTGAAGAAGCTGTTGAAAAGGATGCCACCAAAACTGCTGTTCTTGATGGAACCGTCCATCCTTTGACAAGCTATGTGATAAACTATGTAAAGTTTCTCTTTGATTATCAATCCACACTGAAGCAACTTTTTCAAGAGTTTGATGGTGAACCGGAATCTCAGTTAACAAATGTTACTACAAGGATTATGCAGGCTCTTCAGAACAACCTGGATGGAAAATCTAAGCAGTATAAAGATCGATCTGCACTCACTCAATTATTTCTTATGAACAACATTCACTATATAGTGAGATCTGTGCGGAGGTCAGAAGCAAAGGATTTGTTGGGGGATGACTGGGTGCAGATTCACCGAAGGATCGTACAGCAGCATGCAAATCAGTATAAGAGGGTTTCTTGGGCAAAGATTCTGCAGTGTCTTACCGTTCAGAGCGGAAATCCATCAGGTGGTGATAGCAGTTCACTTTCAAGAGCAATGGTGAAAGATCCCCAAAGATTCAAGACTTTCAACGTGCAATTTGAGGAGCTTCATCAAAGGCAATCCCAGTGGACAGTTCCTGACAGTGAATTGCGAGAGTCTTTAAGGCTAGCTGTTGCTGAAGTCCTCTTGCCTGCCTACAGATCATTCATCAAACGTTTCGGGCCTATGATCGAGAACGGAAAAAACCCGGGGAAGTATATAAAGCTTCGCCCTGAGACCATTGAGTCGATGCTGAATGAATTTTTCGAGAGCAAGACGTGGGGAGAACAGAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0005886 GO:0008150 GO:0009894 GO:0010506 GO:0015630 GO:0016020 GO:0016241 GO:0019222 GO:0031323 GO:0031329 GO:0034451 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043900 GO:0043903 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0071944 GO:2000535

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

297

Amino Acids

34.39

Weight (kDa)

8.38

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	1 - 284	3.8e-97	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52340
fragaria_vesca	FvH4_6g20230 FvH4_6g20230 FvH4_6g20230 FvH4_6g20230 FvH4_6g20230 FvH4_6g20230
malus_domestica	MD12G1039500.v1.1 MD14G1038200.v1.1
prunus_persica	Prupe.7G096000_v2.0.a1
pyrus_communis	pycom12g03360 pycom14g03300
rosa_chinensis	RchiOBHm_Chr3g0475801
rosa_laevigata	RLG00000023812 RLG00000023816
rosa_multiflora	Rmu_sc0000539.1_g000084
rosa_roxburghii	Rroxscaffold_6G00405870
rosa_rugosa	Rorug03G0151700
rosa_samantha	Rh3AG201300 Rh3BG231600 Rh3CG226400 Rh3DG226900
rosa_wichuraiana	Rw3G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	835
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	564
AciI	CCGC	3 cut(s)	73, 433, 564
AclI	AACGTT	1 cut(s)	766
AclWI	GGATC	2 cut(s)	497, 611
AcsI	RAATTY	2 cut(s)	38, 851
AcuI	CTGAAG	4 cut(s)	8, 275, 317, 750
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	7 cut(s)	38, 140, 152, 269, 600, 631, 640
AhdI	GACNNNNNGTC	1 cut(s)	99
AjiI	CACGTC	1 cut(s)	870
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	7 cut(s)	59, 107, 146, 207, 658, 722, 817
AluI	AGCT	7 cut(s)	59, 107, 146, 207, 658, 722, 817
Alw26I	GTCTC	1 cut(s)	821
AlwI	GGATC	2 cut(s)	497, 611
AlwNI	CAGNNNCTG	1 cut(s)	689
Ama87I	CYCGRG	1 cut(s)	799
AoxI	GGCC	1 cut(s)	773
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	2 cut(s)	38, 851
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	773
AsuC2I	CCSGG	2 cut(s)	800, 801
AsuHPI	GGTGA	5 cut(s)	143, 293, 473, 593, 622
AsuNHI	GCTAGC	1 cut(s)	718
AvaI	CYCGRG	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	5 cut(s)	176, 201, 272, 341, 580
BciT130I	CCWGG	1 cut(s)	344
BcnI	CCSGG	2 cut(s)	800, 801
BcoDI	GTCTC	1 cut(s)	821
BfaI	CTAG	2 cut(s)	104, 719
BfmI	CTRYAG	2 cut(s)	542, 748
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	1 cut(s)	500
BlsI	GCNGC	1 cut(s)	501
Bme1390I	CCNGG	3 cut(s)	344, 800, 801
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	799
BmgBI	CACGTC	1 cut(s)	870
BmgT120I	GGNCC	1 cut(s)	773
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	344, 800, 801
BmrI	ACTGGG	2 cut(s)	478, 670
BmsI	GCATC	2 cut(s)	148, 831
BmtI	GCTAGC	1 cut(s)	722
BmuI	ACTGGG	2 cut(s)	478, 670
BpuMI	CCSGG	2 cut(s)	800, 801
Bsa29I	ATCGAT	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	821
BsaJI	CCNNGG	2 cut(s)	799, 800
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	473, 676
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	799, 800
BseGI	GGATG	4 cut(s)	163, 193, 352, 469
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	308, 816
BseNI	ACTGG	2 cut(s)	473, 676
BseRI	GAGGAG	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	2 cut(s)	363, 494
BshFI	GGCC	1 cut(s)	775
BshVI	ATCGAT	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	799
BsiSI	CCGG	2 cut(s)	287, 800
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	821
BsnI	GGCC	1 cut(s)	775
Bso31I	GGTCTC	1 cut(s)	821
BsoBI	CYCGRG	1 cut(s)	799
Bsp143I	GATC	7 cut(s)	370, 374, 425, 489, 616, 752, 780
BspACI	CCGC	3 cut(s)	73, 433, 564
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	2 cut(s)	307, 817
BspDI	ATCGAT	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	546
BspOI	GCTAGC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	497, 611
BspQI	GCTCTTC	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	821
BsrBI	CCGCTC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	473, 676
BssECI	CCNNGG	2 cut(s)	799, 800
BssMI	GATC	7 cut(s)	370, 374, 425, 489, 616, 752, 780
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	190, 556, 685, 695
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	5 cut(s)	61, 327, 504, 720, 744
BstDEI	CTNAG	3 cut(s)	294, 357, 825
BstF5I	GGATG	4 cut(s)	163, 193, 352, 469
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	7 cut(s)	373, 377, 428, 492, 619, 755, 783
BstMAI	GTCTC	1 cut(s)	821
BstMBI	GATC	7 cut(s)	370, 374, 425, 489, 616, 752, 780
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	3 cut(s)	342, 798, 799
BstSFI	CTRYAG	2 cut(s)	542, 748
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	2 cut(s)	425, 616
BstYI	RGATCY	2 cut(s)	425, 616
Bsu15I	ATCGAT	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	775
BsuTUI	ATCGAT	1 cut(s)	373
BtrI	CACGTC	1 cut(s)	870
BtsCI	GGATG	4 cut(s)	163, 193, 352, 469
BtsI	GCAGTG	1 cut(s)	551
BtsIMutI	CAGTG	4 cut(s)	251, 551, 683, 700
Cac8I	GCNNGC	5 cut(s)	61, 327, 504, 720, 744
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	773
Cfr9I	CCCGGG	1 cut(s)	799
ClaI	ATCGAT	1 cut(s)	373
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	494
CspCI	CAANNNNNGTGG	2 cut(s)	659, 694
CviAII	CATG	2 cut(s)	64, 503
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	3 cut(s)	294, 357, 825
DpnI	GATC	7 cut(s)	372, 376, 427, 491, 618, 754, 782
DpnII	GATC	7 cut(s)	370, 374, 425, 489, 616, 752, 780
DrdI	GACNNNNNNGTC	1 cut(s)	835
DriI	GACNNNNNGTC	1 cut(s)	99
DseDI	GACNNNNNNGTC	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	821
Eco57I	CTGAAG	4 cut(s)	8, 275, 317, 750
Eco88I	CYCGRG	1 cut(s)	799
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	67, 506
FalI	AAGNNNNNCTT	4 cut(s)	43, 75, 218, 250
FatI	CATG	2 cut(s)	63, 502
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	4 cut(s)	170, 180, 359, 476
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	2 cut(s)	104, 719
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	775
HapII	CCGG	2 cut(s)	287, 800
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	67, 506
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	2 cut(s)	57, 815
HinfI	GANTC	7 cut(s)	77, 290, 478, 538, 627, 707, 836
HpaI	GTTAAC	1 cut(s)	300
HpaII	CCGG	2 cut(s)	287, 800
HphI	GGTGA	5 cut(s)	143, 293, 473, 593, 622
Hpy166II	GTNNAC	4 cut(s)	284, 300, 593, 681
Hpy188I	TCNGA	4 cut(s)	31, 336, 442, 561
Hpy188III	TCNNGA	7 cut(s)	179, 269, 600, 631, 689, 784, 859
Hpy8I	GTNNAC	4 cut(s)	284, 300, 593, 681
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	4 cut(s)	190, 556, 685, 695
HpyCH4IV	ACGT	3 cut(s)	642, 766, 869
HpyCH4V	TGCA	8 cut(s)	63, 83, 325, 380, 475, 506, 544, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	294, 357, 825
HpySE526I	ACGT	3 cut(s)	642, 766, 869
Hsp92II	CATG	2 cut(s)	67, 506
HspAI	GCGC	1 cut(s)	116
KspAI	GTTAAC	1 cut(s)	300
Kzo9I	GATC	7 cut(s)	370, 374, 425, 489, 616, 752, 780
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	2 cut(s)	148, 831
MaeI	CTAG	2 cut(s)	104, 719
MaeII	ACGT	3 cut(s)	642, 766, 869
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	7 cut(s)	372, 376, 427, 491, 618, 754, 782
MbiI	CCGCTC	1 cut(s)	564
MboI	GATC	7 cut(s)	370, 374, 425, 489, 616, 752, 780
MboII	GAAGA	2 cut(s)	152, 323
MflI	RGATCY	2 cut(s)	425, 616
MluCI	AATT	5 cut(s)	38, 389, 647, 698, 851
MlyI	GAGTC	2 cut(s)	716, 845
MnlI	CCTC	4 cut(s)	429, 513, 646, 746
MseI	TTAA	3 cut(s)	86, 299, 713
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	2 cut(s)	287, 800
MspR9I	CCNGG	3 cut(s)	344, 800, 801
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	2 cut(s)	800, 801
NdeII	GATC	7 cut(s)	370, 374, 425, 489, 616, 752, 780
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	2 cut(s)	67, 506
NlaIV	GGNNCC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	5 cut(s)	77, 290, 478, 538, 627
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	2 cut(s)	715, 844
PpsI	GAGTC	2 cut(s)	715, 844
Psp1406I	AACGTT	1 cut(s)	766
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	773
PstI	CTGCAG	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	2 cut(s)	425, 616
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	86, 299, 713
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	7 cut(s)	370, 374, 425, 489, 616, 752, 780
Sau96I	GGNCC	1 cut(s)	773
SchI	GAGTC	2 cut(s)	716, 845
ScrFI	CCNGG	3 cut(s)	344, 800, 801
SfaNI	GCATC	2 cut(s)	148, 831
SfcI	CTRYAG	2 cut(s)	542, 748
SmaI	CCCGGG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	5 cut(s)	38, 389, 647, 698, 851
SsiI	CCGC	3 cut(s)	73, 433, 564
SspMI	CTAG	2 cut(s)	104, 719
StyD4I	CCNGG	3 cut(s)	342, 798, 799
TaaI	ACNGT	4 cut(s)	190, 556, 685, 695
TaiI	ACGT	3 cut(s)	645, 769, 872
TaqI	TCGA	4 cut(s)	373, 783, 839, 858
TasI	AATT	5 cut(s)	38, 389, 647, 698, 851
TfiI	GAWTC	5 cut(s)	77, 290, 478, 538, 627
Tru1I	TTAA	3 cut(s)	86, 299, 713
Tru9I	TTAA	3 cut(s)	86, 299, 713
TscAI	CASTG	4 cut(s)	258, 551, 683, 700
TseI	GCWGC	1 cut(s)	499
TspDTI	ATGAA	4 cut(s)	416, 650, 748, 864
TspGWI	ACGGA	1 cut(s)	804
TspMI	CCCGGG	1 cut(s)	799
TspRI	CASTG	4 cut(s)	258, 551, 683, 700
Van91I	CCANNNNNTGG	1 cut(s)	578
XapI	RAATTY	2 cut(s)	38, 851
XceI	RCATGY	1 cut(s)	506
XmaI	CCCGGG	1 cut(s)	799
XspI	CTAG	2 cut(s)	104, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.