AT5G53880

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
21872701 .. 21873454
754 bp
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UTR
Exon/CDS
Intron
AT5G53880.1

Sequence Viewer

Length: 201 bp
ATGAAGTTCTTGTTCCAGTGTCCATGTTGCTCTTGCTTCTGCTTCATGAAACCAAAGCCGGGCAAACCAAAAGCTGTTGGAGATACAAAACCAAAGGAGGAGAAGAAGAAAGAGGTGAAGAAAGAAGAGATCAAGAAAGAGGAGAAGAAAGAAGAGAAGAAAGAAGAGAAGAAGGAAACCAAAGCAGAGAAGGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.78

Weight (kDa)

9.19

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019635)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53880
fragaria_vesca FvH4_3g19691
prunus_persica Prupe.4G177600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033001
rosa_rugosa Rorug05G0134800
rosa_samantha Rh5BG229200
rosa_wichuraiana Rw5G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 59
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 2 cut(s) 113, 155
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 59
Bsp143I GATC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 16
BssMI GATC 1 cut(s) 129
Bst6I CTCTTC 3 cut(s) 120, 147, 159
BstDEI CTNAG 1 cut(s) 195
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 45
CviAII CATG 2 cut(s) 24, 46
CviJI RGCY 3 cut(s) 58, 74, 194
CviKI_1 RGCY 3 cut(s) 58, 74, 194
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 120, 147, 159
EarI CTCTTC 3 cut(s) 120, 147, 159
FaeI CATG 2 cut(s) 27, 49
FaiI YATR 2 cut(s) 25, 47
FatI CATG 2 cut(s) 23, 45
HapII CCGG 1 cut(s) 59
Hin1II CATG 2 cut(s) 27, 49
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 46, 133
HpyAV CCTTC 2 cut(s) 166, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 2 cut(s) 27, 49
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 2 cut(s) 29, 72
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 9 cut(s) 115, 118, 130, 137, 157, 164, 169, 176, 181
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 3 cut(s) 91, 106, 133
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 60
NdeII GATC 1 cut(s) 129
NlaIII CATG 2 cut(s) 27, 49
PagI TCATGA 1 cut(s) 45
Sau3AI GATC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 60
SetI ASST 2 cut(s) 76, 117
SgeI CNNG 8 cut(s) 22, 28, 36, 45, 58, 71, 72, 145
StyD4I CCNGG 1 cut(s) 58
TscAI CASTG 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 17, 34, 62
TspRI CASTG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.