Prupe.4G177600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
10529040 .. 10529213
174 bp
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UTR
Exon/CDS
Intron
Prupe.4G177600.1

Sequence Viewer

Length: 168 bp
ATGAAGTTCTTATTCCAGTGCCCCTGCTGCTCTTGTTTCTGCTTCATGAAGCCCAAGAAAGGCAAGGCAAGGGTGAAGGCAGCAGCAACGGTAGCATCCAAGGAAGAGAAGAAAGTTGAAACCAAGGGAGAGAAGAAGGTTGAATCCAAGGAAGAGAAGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.26

Weight (kDa)

9.45

Isoelectric Point (pI)

20.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019635)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53880
fragaria_vesca FvH4_3g19691
prunus_persica Prupe.4G177600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033001
rosa_rugosa Rorug05G0134800
rosa_samantha Rh5BG229200
rosa_wichuraiana Rw5G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 119, 143
ApeKI GCWGC 3 cut(s) 27, 80, 83
AsuHPI GGTGA 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 14, 92, 95
BisI GCNGC 3 cut(s) 28, 81, 84
BlsI GCNGC 3 cut(s) 29, 82, 85
BmsI GCATC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 99, 123, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 3 cut(s) 99, 123, 147
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 16
BseSI GKGCMC 1 cut(s) 23
BseXI GCAGC 3 cut(s) 14, 92, 95
BslI CCNNNNNNNGG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 23
BspHI TCATGA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 99, 123, 147
BssT1I CCWWGG 3 cut(s) 99, 123, 147
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 99, 147
BstF5I GGATG 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 27, 92
BstSLI GKGCMC 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 14, 92, 95
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 45
CviAII CATG 1 cut(s) 46
CviJI RGCY 1 cut(s) 52
CviKI_1 RGCY 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 99, 147
EarI CTCTTC 2 cut(s) 99, 147
Eco130I CCWWGG 3 cut(s) 99, 123, 147
EcoT14I CCWWGG 3 cut(s) 99, 123, 147
ErhI CCWWGG 3 cut(s) 99, 123, 147
FaeI CATG 1 cut(s) 49
FaiI YATR 1 cut(s) 47
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 28, 81, 84
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 28, 81, 84
GluI GCNGC 3 cut(s) 28, 81, 84
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 143
HphI GGTGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 70, 130
HpyCH4III ACNGT 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 92
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 2 cut(s) 29, 37
Lsp1109I GCAGC 3 cut(s) 14, 92, 95
LweI GCATC 1 cut(s) 104
MboII GAAGA 4 cut(s) 116, 121, 145, 164
MhlI GDGCHC 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 27, 92
NlaIII CATG 1 cut(s) 49
PagI TCATGA 1 cut(s) 45
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 29, 82, 85
SatI GCNGC 3 cut(s) 28, 81, 84
SduI GDGCHC 1 cut(s) 23
SetI ASST 1 cut(s) 141
SfaNI GCATC 1 cut(s) 104
StyI CCWWGG 3 cut(s) 99, 123, 147
TaaI ACNGT 1 cut(s) 91
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 1 cut(s) 23
TseI GCWGC 3 cut(s) 27, 80, 83
TspDTI ATGAA 3 cut(s) 17, 34, 62
TspRI CASTG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.