FvH4_3g19691

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
12885603 .. 12886009
407 bp
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UTR
Exon/CDS
Intron
FvH4_3g19691.t1

Sequence Viewer

Length: 201 bp
ATGGCTAACCCCACAGACCCTAGTCCCACTGCTAGCTCTGGCATTATTAGGCAGGCATCTTCCTTGTTGATAGTGATTGAAGTGGAATCCAGTCCAAAGAAGGGCAAAGCCAAGGTGCAGGCTACAGCCAAGGAAGCAGCAAAGGCAGAGAAGAAGGTTGAAGCTCCCAAGGAAGAGAAGAAGGAAGAGAAGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.05

Weight (kDa)

9.26

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019635)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53880
fragaria_vesca FvH4_3g19691
prunus_persica Prupe.4G177600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033001
rosa_rugosa Rorug05G0134800
rosa_samantha Rh5BG229200
rosa_wichuraiana Rw5G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 80, 161
AluBI AGCT 2 cut(s) 36, 164
AluI AGCT 2 cut(s) 36, 164
ApeKI GCWGC 1 cut(s) 137
AsuNHI GCTAGC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 149
BfaI CTAG 2 cut(s) 21, 33
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmsI GCATC 1 cut(s) 65
BmtI GCTAGC 1 cut(s) 36
BoxI GACNNNNGTC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 111, 129, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 111, 129, 168
BseLI CCNNNNNNNGG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 9
BspOI GCTAGC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 3 cut(s) 111, 129, 168
BssT1I CCWWGG 3 cut(s) 111, 129, 168
Bst6I CTCTTC 2 cut(s) 168, 180
BstC8I GCNNGC 3 cut(s) 34, 54, 120
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstPAI GACNNNNGTC 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 3 cut(s) 34, 54, 120
CviJI RGCY 6 cut(s) 5, 36, 110, 122, 128, 164
CviKI_1 RGCY 6 cut(s) 5, 36, 110, 122, 128, 164
Eam1104I CTCTTC 2 cut(s) 168, 180
EarI CTCTTC 2 cut(s) 168, 180
Eco130I CCWWGG 3 cut(s) 111, 129, 168
EcoT14I CCWWGG 3 cut(s) 111, 129, 168
ErhI CCWWGG 3 cut(s) 111, 129, 168
FaqI GGGAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 21, 33
GluI GCNGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 94, 148, 175
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 24, 38, 103, 104
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 65
MaeI CTAG 2 cut(s) 21, 33
MboII GAAGA 5 cut(s) 51, 163, 185, 190, 197
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NheI GCTAGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 139
PshAI GACNNNNGTC 1 cut(s) 21
SatI GCNGC 1 cut(s) 138
SetI ASST 4 cut(s) 38, 117, 159, 166
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 123
SspMI CTAG 2 cut(s) 21, 33
StyI CCWWGG 3 cut(s) 111, 129, 168
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 137
TspRI CASTG 1 cut(s) 34
XspI CTAG 2 cut(s) 21, 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.