Rorug05G0134800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0019635
Physical Location & Seq
Reverse (-)
12126486 .. 12129546
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0134800.1

Sequence Viewer

Length: 675 bp
ATGGCAAAGGCTGTTCTCCCTCACCATCTTCGGTACCAGCCCCTCAAGGCCATCACCGGCCATAATCCAAGCGGTCGTCATCCTCTCCGTCGATCTGAGGGCATGCCCGGCAACCGCTACTACACCGCCGTGTTCCAGCCCCACGACCGCATCATGGGCTCCCCTCCGGCTAAGGCCTTGGATTGGTACACATTCACGAGCTCCAGCTCCAGTTCCGCCAGAAGACCCACAATCTCAATCGACTCGAGGCCCAGCGGATTGAGCTCAATTCCAGAGGTTTGCAGATCCGTGAAATTTCTAGTTGGTGGTGCTTCCTTGAAGGTCTTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTAATGGTTGTGGCAGAGCTGCGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATATTGAGGTCTAAGGCTTTGGATAAATCGAAGTATATGGATGGCCTTCGAGCAGTAAGGAAGCACATTCAGAAGCTGGAACATGACCTTGAGTTGCTTAAAGCACATGCTAAAACAAAAGTTGAATTTAGTTCTAATGCTATTGAAGAAACTCCTGAAGATATTGAGAGCGTTGAGTCTGGGAGCTCCTCAAACCCCAATGAGACCATGAGAACAGCAAAGCTAGACACTCTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.5

Weight (kDa)

9.58

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 106 - 132 1.5e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019635)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53880
fragaria_vesca FvH4_3g19691
prunus_persica Prupe.4G177600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033001
rosa_rugosa Rorug05G0134800
rosa_samantha Rh5BG229200
rosa_wichuraiana Rw5G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 334
AciI CCGC 7 cut(s) 72, 115, 126, 148, 216, 255, 404
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 293, 560
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 2 cut(s) 35, 188
AfiI CCNNNNNNNGG 3 cut(s) 154, 183, 334
AflII CTTAAG 1 cut(s) 668
AgsI TTSAA 3 cut(s) 319, 560, 581
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 7 cut(s) 201, 207, 264, 401, 511, 621, 658
AluI AGCT 7 cut(s) 201, 207, 264, 401, 511, 621, 658
Alw21I GWGCWC 3 cut(s) 203, 266, 623
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 511
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 5 cut(s) 48, 58, 174, 248, 478
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 2 cut(s) 293, 560
AseI ATTAAT 1 cut(s) 384
Asp700I GAANNNNTTC 1 cut(s) 323
Asp718I GGTACC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 14, 46
AvaI CYCGRG 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 4 cut(s) 161, 203, 266, 623
BauI CACGAG 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 229, 316
Bbv12I GWGCWC 3 cut(s) 203, 266, 623
BbvI GCAGC 1 cut(s) 388
BccI CCATC 4 cut(s) 33, 59, 328, 470
BceAI ACGGC 1 cut(s) 113
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 2 cut(s) 299, 659
BfrI CTTAAG 1 cut(s) 668
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 35, 160
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 2 cut(s) 229, 316
BpmI CTGGAG 3 cut(s) 187, 193, 366
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 29, 545
BpuMI CCSGG 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 183, 334
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 79, 481
BseLI CCNNNNNNNGG 3 cut(s) 154, 183, 334
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 251
Bsh1285I CGRYCG 2 cut(s) 76, 148
BshFI GGCC 5 cut(s) 50, 60, 176, 250, 480
BshNI GGYRCC 1 cut(s) 33
BsiEI CGRYCG 2 cut(s) 76, 148
BsiHKAI GWGCWC 3 cut(s) 203, 266, 623
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 3 cut(s) 57, 108, 167
BslI CCNNNNNNNGG 3 cut(s) 154, 183, 334
BsmAI GTCTC 1 cut(s) 632
BsnI GGCC 5 cut(s) 50, 60, 176, 250, 480
Bso31I GGTCTC 1 cut(s) 632
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 5 cut(s) 161, 203, 266, 379, 623
Bsp143I GATC 2 cut(s) 92, 284
BspACI CCGC 7 cut(s) 72, 115, 126, 148, 216, 255, 404
BspANI GGCC 5 cut(s) 50, 60, 176, 250, 480
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 35, 160
BspPI GGATC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 33
BspTI CTTAAG 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 632
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 2 cut(s) 92, 284
BssSI CACGAG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 196
BstAFI CTTAAG 1 cut(s) 668
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 96, 171, 447
BstF5I GGATG 2 cut(s) 79, 481
BstKTI GATC 2 cut(s) 95, 287
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 2 cut(s) 92, 284
BstMCI CGRYCG 2 cut(s) 76, 148
BstMWI GCNNNNNNNGC 5 cut(s) 108, 156, 261, 410, 425
BstNSI RCATGY 2 cut(s) 106, 545
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 2 cut(s) 229, 316
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 5 cut(s) 50, 60, 176, 250, 480
BtsCI GGATG 2 cut(s) 79, 481
BtsIMutI CAGTG 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 104
CaiI CAGNNNCTG 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 2 cut(s) 34, 187
CviAII CATG 6 cut(s) 103, 154, 329, 518, 542, 643
CviQI GTAC 2 cut(s) 34, 187
DdeI CTNAG 3 cut(s) 96, 171, 447
DpnI GATC 2 cut(s) 94, 286
DpnII GATC 2 cut(s) 92, 284
EaeI YGGCCR 1 cut(s) 58
EciI GGCGGA 1 cut(s) 205
Ecl136II GAGCTC 3 cut(s) 201, 264, 621
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 176
Eco24I GRGCYC 4 cut(s) 161, 203, 266, 623
Eco31I GGTCTC 1 cut(s) 632
Eco53kI GAGCTC 3 cut(s) 201, 264, 621
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 244
EcoICRI GAGCTC 3 cut(s) 201, 264, 621
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 4 cut(s) 161, 203, 266, 623
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 6 cut(s) 106, 157, 332, 521, 545, 646
FatI CATG 6 cut(s) 102, 153, 328, 517, 541, 642
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 2 cut(s) 66, 488
FriOI GRGCYC 4 cut(s) 161, 203, 266, 623
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 2 cut(s) 299, 659
GluI GCNGC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 3 cut(s) 187, 193, 366
HaeIII GGCC 5 cut(s) 50, 60, 176, 250, 480
HapII CCGG 3 cut(s) 57, 108, 167
Hin1II CATG 6 cut(s) 106, 157, 332, 521, 545, 646
HinfI GANTC 2 cut(s) 242, 611
HpaII CCGG 3 cut(s) 57, 108, 167
HphI GGTGA 2 cut(s) 14, 46
Hpy166II GTNNAC 2 cut(s) 189, 364
Hpy188I TCNGA 2 cut(s) 97, 507
Hpy188III TCNNGA 3 cut(s) 196, 272, 590
Hpy8I GTNNAC 2 cut(s) 189, 364
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 313, 491
HpyCH4V TGCA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 156, 261, 410, 425
HpyF3I CTNAG 3 cut(s) 96, 171, 447
Hsp92II CATG 6 cut(s) 106, 157, 332, 521, 545, 646
KpnI GGTACC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 92, 284
LmnI GCTCC 5 cut(s) 164, 206, 212, 618, 626
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 159
MaeI CTAG 2 cut(s) 299, 659
MalI GATC 2 cut(s) 94, 286
MboI GATC 2 cut(s) 92, 284
MboII GAAGA 5 cut(s) 20, 234, 316, 593, 605
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 5 cut(s) 161, 203, 266, 379, 623
MluCI AATT 3 cut(s) 267, 293, 560
MlyI GAGTC 2 cut(s) 236, 620
MnlI CCTC 9 cut(s) 30, 53, 91, 93, 174, 240, 268, 435, 634
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 3 cut(s) 384, 534, 669
MslI CAYNNNNRTG 2 cut(s) 128, 369
MspA1I CMGCKG 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 3 cut(s) 57, 108, 167
MspR9I CCNGG 1 cut(s) 108
MwoI GCNNNNNNNGC 5 cut(s) 108, 156, 261, 410, 425
NciI CCSGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 370
NdeII GATC 2 cut(s) 92, 284
NlaIII CATG 6 cut(s) 106, 157, 332, 521, 545, 646
NlaIV GGNNCC 2 cut(s) 35, 160
NspI RCATGY 2 cut(s) 106, 545
OliI CACNNNNGTG 1 cut(s) 128
PaeI GCATGC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 244
PceI AGGCCT 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 2 cut(s) 236, 619
PpsI GAGTC 2 cut(s) 236, 619
PshBI ATTAAT 1 cut(s) 384
Psp124BI GAGCTC 3 cut(s) 203, 266, 623
PspFI CCCAGC 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 35, 160
PspPI GGNCC 1 cut(s) 249
PspXI VCTCGAGB 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 2 cut(s) 35, 188
RsaNI GTAC 2 cut(s) 34, 187
RseI CAYNNNNRTG 2 cut(s) 128, 369
SacI GAGCTC 3 cut(s) 203, 266, 623
SaqAI TTAA 3 cut(s) 384, 534, 669
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 2 cut(s) 92, 284
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 2 cut(s) 236, 620
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 5 cut(s) 161, 203, 266, 379, 623
SfaNI GCATC 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 128, 369
SmlI CTYRAG 4 cut(s) 44, 244, 524, 668
SmoI CTYRAG 4 cut(s) 44, 244, 524, 668
SphI GCATGC 1 cut(s) 106
Sse9I AATT 3 cut(s) 267, 293, 560
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 7 cut(s) 72, 115, 126, 148, 216, 255, 404
SspMI CTAG 2 cut(s) 299, 659
SstI GAGCTC 3 cut(s) 203, 266, 623
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 5 cut(s) 91, 240, 245, 464, 484
TasI AATT 3 cut(s) 267, 293, 560
Tru1I TTAA 3 cut(s) 384, 534, 669
Tru9I TTAA 3 cut(s) 384, 534, 669
TscAI CASTG 1 cut(s) 384
TseI GCWGC 1 cut(s) 401
TspGWI ACGGA 2 cut(s) 77, 277
TspRI CASTG 1 cut(s) 384
Van91I CCANNNNNTGG 1 cut(s) 334
Vha464I CTTAAG 1 cut(s) 668
VspI ATTAAT 1 cut(s) 384
XapI RAATTY 2 cut(s) 293, 560
XceI RCATGY 2 cut(s) 106, 545
XhoI CTCGAG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 2 cut(s) 299, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.