Rh5BG229200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
26882279 .. 26882711
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG229200.1

Sequence Viewer

Length: 240 bp
ATGGCTAGCCCCACAGACTCTATTCCCACTCCCAACTCTGGCATTATTAGGCAGGCATCTTTCTTGTTGATAGTGATTGAGGATTTGAGGTGGAAGCCATGTCCTTGCTGCTCTTGCTTCTGCTTCATGAAGCCAAAGAAGGGCAGAGCAAAGGTGAAGGCTACAGCCAAGGAAGCAGCAAAGGAAGAGAAGAAGGTTGAAGCTCCCAAGGAAGAGAAGAAGGAAGAGAAGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.88

Weight (kDa)

9.18

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019635)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53880
fragaria_vesca FvH4_3g19691
prunus_persica Prupe.4G177600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033001
rosa_rugosa Rorug05G0134800
rosa_samantha Rh5BG229200
rosa_wichuraiana Rw5G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 38, 140
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 108, 176
AsuHPI GGTGA 1 cut(s) 166
AsuNHI GCTAGC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 95, 188
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 109, 177
BlsI GCNGC 2 cut(s) 110, 178
BmsI GCATC 1 cut(s) 65
BmtI GCTAGC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 168, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 140
BseDI CCNNGG 2 cut(s) 168, 207
BseLI CCNNNNNNNGG 2 cut(s) 38, 140
BseXI GCAGC 2 cut(s) 95, 188
BslI CCNNNNNNNGG 2 cut(s) 38, 140
BspHI TCATGA 1 cut(s) 126
BspOI GCTAGC 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 168, 207
BssT1I CCWWGG 2 cut(s) 168, 207
Bst6I CTCTTC 3 cut(s) 180, 207, 219
BstC8I GCNNGC 2 cut(s) 7, 54
BstMWI GCNNNNNNNGC 2 cut(s) 114, 173
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 95, 188
Cac8I GCNNGC 2 cut(s) 7, 54
CciI TCATGA 1 cut(s) 126
CviAII CATG 2 cut(s) 99, 127
CviJI RGCY 7 cut(s) 5, 9, 97, 133, 161, 167, 203
CviKI_1 RGCY 7 cut(s) 5, 9, 97, 133, 161, 167, 203
Eam1104I CTCTTC 3 cut(s) 180, 207, 219
EarI CTCTTC 3 cut(s) 180, 207, 219
Eco130I CCWWGG 2 cut(s) 168, 207
EcoT14I CCWWGG 2 cut(s) 168, 207
ErhI CCWWGG 2 cut(s) 168, 207
FaeI CATG 2 cut(s) 102, 130
FaiI YATR 2 cut(s) 100, 128
FatI CATG 2 cut(s) 98, 126
Fnu4HI GCNGC 2 cut(s) 109, 177
Fsp4HI GCNGC 2 cut(s) 109, 177
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 109, 177
Hin1II CATG 2 cut(s) 102, 130
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 127
HpyAV CCTTC 4 cut(s) 133, 151, 187, 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 173
Hsp92II CATG 2 cut(s) 102, 130
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 2 cut(s) 24, 38
Lsp1109I GCAGC 2 cut(s) 95, 188
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 6
MboII GAAGA 5 cut(s) 197, 202, 224, 229, 236
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 2 cut(s) 73, 81
MwoI GCNNNNNNNGC 2 cut(s) 114, 173
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 102, 130
PagI TCATGA 1 cut(s) 126
PkrI GCNGC 2 cut(s) 110, 178
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
SatI GCNGC 2 cut(s) 109, 177
SchI GAGTC 1 cut(s) 11
SetI ASST 4 cut(s) 92, 156, 198, 205
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 162
SspMI CTAG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 168, 207
TseI GCWGC 2 cut(s) 108, 176
TspDTI ATGAA 2 cut(s) 115, 143
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.