AT5G55150

F-box protein At5g55150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016479
Physical Location & Seq
Reverse (-)
22382202 .. 22383392
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55150.1

Sequence Viewer

Length: 1083 bp
ATGGCTCTACCTTCTTCGTCGTGGTCAGAGTTTCTTCCGGAGCTTCTCAACACTGTATTCCACAACCTAAACGACGCCAGAGACATTCTAAACTGTGCCACGGTCTGTTCTTCTTGGAAGGATTCTTCTTCGGCCGTATACTACAGCCGGACGTTTTCTCCTTTTCTGTTTATTTCCCATCTCTCTTCCAATGAAGAAATCCGATTCTCCGACCAGTTTAGAGTTTTGTCTCCGGGAAAGTTGGGTTTCTCAGGGAACCAACAAGCGTGGGTTTGTGGCAGTACACTAGGGTTTTTGTTGACGAAACCCGTTACCAAAAGCGTTACTTCTCTGCCTCCTTTGATATCTTTTGAGGATGTTCAGCGGTTGCTTCAGTCTCAAGCCATCATTCCAGACTCTGAAGCCCTAAAGAACTTTATAAAGAAAGCAGTCTCTTCAACGAGTCTATTAGACGATGAATGGGTTGTGCTCGTAATCTACAACACTGATAGGAAGCTAGCGTTCTGCAGACGCGGAGATAAACAATGGACGGATTTGGAGTCTGTTGCCTCTTCTGTCGATGACATTGTGTTCTGCAATGGCGTCTTCTTTGCCATCGACAGACTCGGAGAGATATATCACTGTGAGCTTAGTGCTAACAACCCAAAAGCTACTCCTTTATGCAGCACCTCGCCGTTTCGGTACGACTCTTGCAAGAAATACTTGGCAGAGTCGGATTACGACGAACTGTGGGTGGTCCTAAAGAAGCTGGAGCTTAACGACGATTGTGATTTCGAAACCTCTTTCGAGATTTACGAATTCAATCGCGAGACTAACGAATGGACAAAGGTGATGAGCTTGAGAGGAAAAGCTTTGTTCTTGAGCCCTCAAGGTAGATGTATAGCTGTTTTAGCAGGTGAGAGAGGATTTTTCAAAGACAACTCAGTTTATTTCATTGATGGTGATGATCCAAGTGTAGGAGGATCAGGGCCTCAGAATCTGAGCGTTTTTGAATGGGAGAGTAAGCAAATCATGAAAATTTACCAGCCAAGATCTTGGAATTGTCAGATGTTTTGGGTCACACCAACAGACGTTCCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box-like

Protein Analysis

360

Amino Acids

40.83

Weight (kDa)

4.86

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 13 - 43 5.9e-06 F-box-like
Beta-prop_KIB1-4 PF03478 81 - 330 6.5e-37 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55150
fragaria_vesca FvH4_4g05013
rosa_chinensis RchiOBHm_Chr6g0303821
rosa_laevigata RLG00000011041
rosa_multiflora Rmu_co8503885.1_g000001 Rmu_sc0012878.1_g000002
rosa_roxburghii Rroxscaffold_7G00164380
rosa_rugosa Rorug06G0325100.1
rosa_samantha Rh2CG020600 Rh6AG439400 Rh6BG463600 Rh6CG451700 Rh6DG438600
rosa_wichuraiana Rw6G038040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
AarI CACCTGC 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 884
AccI GTMKAC 1 cut(s) 138
AccII CGCG 2 cut(s) 513, 807
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 2 cut(s) 364, 513
AclWI GGATC 2 cut(s) 941, 970
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 2 cut(s) 797, 1017
AcuI CTGAAG 2 cut(s) 356, 420
AcyI GRCGYC 2 cut(s) 75, 582
AfaI GTAC 2 cut(s) 283, 683
AfiI CCNNNNNNNGG 1 cut(s) 956
AgsI TTSAA 4 cut(s) 438, 802, 913, 992
AluBI AGCT 9 cut(s) 43, 496, 628, 650, 748, 754, 837, 851, 884
AluI AGCT 9 cut(s) 43, 496, 628, 650, 748, 754, 837, 851, 884
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 5 cut(s) 75, 234, 381, 436, 803
AlwI GGATC 2 cut(s) 941, 970
AlwNI CAGNNNCTG 2 cut(s) 398, 979
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 2 cut(s) 132, 968
ApeKI GCWGC 1 cut(s) 663
ApoI RAATTY 2 cut(s) 797, 1017
AspS9I GGNCC 2 cut(s) 736, 968
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 841, 908, 953
AsuII TTCGAA 1 cut(s) 774
AsuNHI GCTAGC 1 cut(s) 496
AvaII GGWCC 1 cut(s) 736
BanII GRGCYC 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 675
BccI CCATC 4 cut(s) 186, 392, 602, 932
BceAI ACGGC 2 cut(s) 119, 658
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 5 cut(s) 75, 234, 381, 436, 803
BfaI CTAG 2 cut(s) 287, 497
BfmI CTRYAG 2 cut(s) 142, 505
BfuAI ACCTGC 1 cut(s) 884
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 1 cut(s) 664
BlsI GCNGC 1 cut(s) 665
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 736
BmgT120I GGNCC 2 cut(s) 736, 968
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 234
BmtI GCTAGC 1 cut(s) 500
BpiI GAAGAC 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 770
Bpu14I TTCGAA 1 cut(s) 774
BpuEI CTTGAG 4 cut(s) 363, 852, 859, 880
BpuMI CCSGG 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 75, 582
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 956
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 583
BseAI TCCGGA 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 956
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 4 cut(s) 264, 936, 971, 986
BseNI ACTGG 1 cut(s) 214
BseX3I CGGCCG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 675
Bsh1236I CGCG 2 cut(s) 513, 807
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 134, 970
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 3 cut(s) 38, 148, 233
BslI CCNNNNNNNGG 1 cut(s) 956
BsmAI GTCTC 5 cut(s) 75, 234, 381, 436, 803
BsnI GGCC 2 cut(s) 134, 970
Bsp119I TTCGAA 1 cut(s) 774
Bsp1286I GDGCHC 2 cut(s) 471, 866
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 3 cut(s) 946, 962, 1031
Bsp68I TCGCGA 1 cut(s) 807
BspACI CCGC 2 cut(s) 364, 513
BspANI GGCC 2 cut(s) 134, 970
BspCNI CTCAG 4 cut(s) 263, 935, 972, 985
BspEI TCCGGA 1 cut(s) 37
BspFNI CGCG 2 cut(s) 513, 807
BspHI TCATGA 1 cut(s) 1011
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 509
BspMI ACCTGC 1 cut(s) 884
BspOI GCTAGC 1 cut(s) 500
BspPI GGATC 2 cut(s) 941, 970
BspT104I TTCGAA 1 cut(s) 774
BsrDI GCAATG 1 cut(s) 583
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 3 cut(s) 946, 962, 1031
BssNAI GTATAC 1 cut(s) 139
BssNI GRCGYC 2 cut(s) 75, 582
Bst1107I GTATAC 1 cut(s) 139
Bst4CI ACNGT 5 cut(s) 55, 95, 103, 623, 729
Bst6I CTCTTC 3 cut(s) 190, 439, 556
BstACI GRCGYC 2 cut(s) 75, 582
BstBI TTCGAA 1 cut(s) 774
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 6 cut(s) 250, 629, 922, 972, 980, 1077
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 2 cut(s) 513, 807
BstKTI GATC 3 cut(s) 949, 965, 1034
BstMAI GTCTC 5 cut(s) 75, 234, 381, 436, 803
BstMBI GATC 3 cut(s) 946, 962, 1031
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 890
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 2 cut(s) 142, 505
BstUI CGCG 2 cut(s) 513, 807
BstV1I GCAGC 1 cut(s) 675
BstV2I GAAGAC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 1031
BstXI CCANNNNNNTGG 1 cut(s) 1035
BstYI RGATCY 1 cut(s) 1031
BstZ17I GTATAC 1 cut(s) 139
BstZI CGGCCG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 134, 970
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 51, 483, 619
BtuMI TCGCGA 1 cut(s) 807
BveI ACCTGC 1 cut(s) 884
Cac8I GCNNGC 1 cut(s) 498
CaiI CAGNNNCTG 2 cut(s) 398, 979
CciI TCATGA 1 cut(s) 1011
Cfr13I GGNCC 2 cut(s) 736, 968
CseI GACGC 3 cut(s) 83, 519, 571
Csp6I GTAC 2 cut(s) 282, 682
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviAII CATG 1 cut(s) 1012
CviQI GTAC 2 cut(s) 282, 682
DdeI CTNAG 6 cut(s) 250, 629, 922, 972, 980, 1077
DpnI GATC 3 cut(s) 948, 964, 1033
DpnII GATC 3 cut(s) 946, 962, 1031
EaeI YGGCCR 1 cut(s) 132
EagI CGGCCG 1 cut(s) 132
Eam1104I CTCTTC 3 cut(s) 190, 439, 556
EarI CTCTTC 3 cut(s) 190, 439, 556
EclXI CGGCCG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 866
Eco32I GATATC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 736
Eco52I CGGCCG 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 356, 420
EcoO109I RGGNCCY 1 cut(s) 968
EcoRI GAATTC 1 cut(s) 797
EcoRV GATATC 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 866
FaeI CATG 1 cut(s) 1015
FaiI YATR 6 cut(s) 139, 419, 616, 661, 881, 1013
FalI AAGNNNNNCTT 4 cut(s) 310, 342, 686, 718
FatI CATG 1 cut(s) 1011
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 664
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 866
Fsp4HI GCNGC 1 cut(s) 664
FspBI CTAG 2 cut(s) 287, 497
GluI GCNGC 1 cut(s) 664
GsuI CTGGAG 1 cut(s) 770
HaeIII GGCC 2 cut(s) 134, 970
HapII CCGG 3 cut(s) 38, 148, 233
HgaI GACGC 3 cut(s) 83, 519, 571
Hin1I GRCGYC 2 cut(s) 75, 582
Hin1II CATG 1 cut(s) 1015
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 9 cut(s) 122, 204, 395, 442, 539, 603, 686, 710, 976
HpaII CCGG 3 cut(s) 38, 148, 233
HphI GGTGA 3 cut(s) 841, 908, 953
Hpy166II GTNNAC 3 cut(s) 139, 284, 300
Hpy188I TCNGA 9 cut(s) 28, 203, 211, 400, 608, 715, 975, 981, 1047
Hpy188III TCNNGA 6 cut(s) 38, 392, 787, 806, 859, 1012
Hpy8I GTNNAC 3 cut(s) 139, 284, 300
Hpy99I CGWCG 4 cut(s) 22, 77, 725, 764
HpyAV CCTTC 2 cut(s) 21, 112
HpyCH4III ACNGT 5 cut(s) 55, 95, 103, 623, 729
HpyCH4IV ACGT 2 cut(s) 152, 1071
HpyCH4V TGCA 4 cut(s) 507, 576, 663, 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 890
HpyF3I CTNAG 6 cut(s) 250, 629, 922, 972, 980, 1077
HpySE526I ACGT 2 cut(s) 152, 1071
Hsp92I GRCGYC 2 cut(s) 75, 582
Hsp92II CATG 1 cut(s) 1015
Kpn2I TCCGGA 1 cut(s) 37
Kzo9I GATC 3 cut(s) 946, 962, 1031
LmnI GCTCC 2 cut(s) 40, 751
Lsp1109I GCAGC 1 cut(s) 675
MaeI CTAG 2 cut(s) 287, 497
MaeII ACGT 2 cut(s) 152, 1071
MaeIII GTNAC 3 cut(s) 310, 322, 1057
MalI GATC 3 cut(s) 948, 964, 1033
MboI GATC 3 cut(s) 946, 962, 1031
MflI RGATCY 1 cut(s) 1031
MhlI GDGCHC 2 cut(s) 471, 866
MluCI AATT 3 cut(s) 797, 1017, 1039
MlyI GAGTC 6 cut(s) 389, 451, 548, 597, 680, 719
MmeI TCCRAC 2 cut(s) 234, 693
MroI TCCGGA 1 cut(s) 37
MseI TTAA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 3 cut(s) 38, 148, 233
MspR9I CCNGG 1 cut(s) 234
MvnI CGCG 2 cut(s) 513, 807
MwoI GCNNNNNNNGC 1 cut(s) 890
NciI CCSGG 1 cut(s) 234
NdeII GATC 3 cut(s) 946, 962, 1031
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 1 cut(s) 1015
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 1057
NruI TCGCGA 1 cut(s) 807
NspV TTCGAA 1 cut(s) 774
PagI TCATGA 1 cut(s) 1011
PaqCI CACCTGC 1 cut(s) 884
PcsI WCGNNNNNNNCGW 1 cut(s) 792
PfeI GAWTC 3 cut(s) 122, 204, 976
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 1 cut(s) 665
PleI GAGTC 6 cut(s) 389, 450, 547, 597, 680, 718
PpsI GAGTC 6 cut(s) 389, 450, 547, 597, 680, 718
PsiI TTATAA 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 736, 968
PstI CTGCAG 1 cut(s) 509
PstNI CAGNNNCTG 2 cut(s) 398, 979
PsuI RGATCY 1 cut(s) 1031
RruI TCGCGA 1 cut(s) 807
RsaI GTAC 2 cut(s) 283, 683
RsaNI GTAC 2 cut(s) 282, 682
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 1 cut(s) 664
Sau3AI GATC 3 cut(s) 946, 962, 1031
Sau96I GGNCC 2 cut(s) 736, 968
SchI GAGTC 6 cut(s) 389, 451, 548, 597, 680, 719
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 2 cut(s) 471, 866
SfcI CTRYAG 2 cut(s) 142, 505
SfuI TTCGAA 1 cut(s) 774
SinI GGWCC 1 cut(s) 736
SmlI CTYRAG 4 cut(s) 378, 838, 859, 867
SmoI CTYRAG 4 cut(s) 378, 838, 859, 867
Sse9I AATT 3 cut(s) 797, 1017, 1039
SsiI CCGC 2 cut(s) 364, 513
SspMI CTAG 2 cut(s) 287, 497
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 5 cut(s) 55, 95, 103, 623, 729
TaiI ACGT 2 cut(s) 155, 1074
TaqI TCGA 4 cut(s) 558, 597, 774, 786
TasI AATT 3 cut(s) 797, 1017, 1039
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 3 cut(s) 122, 204, 976
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 3 cut(s) 58, 490, 626
TseFI GTSAC 1 cut(s) 1057
TseI GCWGC 1 cut(s) 663
Tsp45I GTSAC 1 cut(s) 1057
TspDTI ATGAA 4 cut(s) 207, 471, 922, 1028
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 3 cut(s) 58, 490, 626
VpaK11BI GGWCC 1 cut(s) 736
XapI RAATTY 2 cut(s) 797, 1017
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 2 cut(s) 287, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.