Rw6G038040

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016479
Physical Location & Seq
Reverse (-)
62258016 .. 62259720
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038040.1

Sequence Viewer

Length: 1194 bp
ATGGCCGCTGACTGGACCCAGCTCCCACCGGAACTGGTAGAATCAATCTCCAAAAAGCTCAAAATCTACGCAGACTATCTCCGATTCCGAGTCGTCTGTCACAGCTGGCAAGCCTCTGTTCCCAAAACTCCAAACCACCTACCTCCTCAGCTCCCATGGCTTATGCTCCCCCAATCCCAACCCAACCAATCACACCGCGCCTTTTACAACCTCTCCAACAGCAGAGTCCACTTCCTCCACCTTCCAGAAGCTTCTCACCGCAAGCGCCGCTGCGGCTCCTCCCACGGCTGGCTTGTGATCCTCGACGAAACCCCCTCCGTCCTCCTTGTAAACCCCCTCACACGTGGCAAGCGCCCCCTCCCTCCGCTGTCCACCTTCCCTAATGTTGTTAGATTCGATTACTCCCAAATTGGGCGGGAATATGTGCTCCGGTCCCTGTCCGGCGAGCTCTACACGCGCAGCTTGATCCAAATGCGTGATTCCTTTGTGAAGAAGCTGGTGCTGTCTTCGAGTCCAATGGAAGAAAACGGTTTTATTGCCCTGACGATTGTGAATCAGACCGGTGACTTGGCGTTTTGTAGGGAGGGGGACGAGAATTGGAGTTTCATAGATGAAGCAAGATGTTATTCGGAGGATGCCATTTCTTTCAATGGCTTGTTTTACGCGGTTGATAATCATGGCATTGTTGCAGAGTGCGATGTGAAAGGTCCGTCCCCTGTTGTTAGGATCATCCAAACGCCGAGATTGGATGATGCAGATATGAGGTATTTGGTGAATTCAGGGGCTGATTTGTTGTTGCTTAGCAGGTATTTGGATGTTGATCATGATATTGTGAACCATGATGCAAATGTGAATTACAGAACTGTGGGATTCGATGTTTTTCGGATGAATTGGATGGGGCCGAGGTGGGAGAAGGTTGAGAACTTGGGTGATAGGATGCTGTTTATTGGGGAAAACTCGTCATTTTCATTGTCGGCATCTGATTTTCCAGGATGTGTGGGAAATTGTATCTATTTTACGGATGATTACTCCGAGTTGAACTATGAAAGTGGAGTTGGGGGATATGATTCTGGCATTTTCAGATTATGGGATGGAACGATTCAGGAATTGCCCCCTTATCCAAGGAATTCAAATTACCAGGTACATTGGCCTCCCGGCTCTCTACCGCTTTGGGTTATCCCCAATCCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

397

Amino Acids

45.25

Weight (kDa)

5.67

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 68 - 356 2.6e-68 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55150
fragaria_vesca FvH4_4g05013
rosa_chinensis RchiOBHm_Chr6g0303821
rosa_laevigata RLG00000011041
rosa_multiflora Rmu_co8503885.1_g000001 Rmu_sc0012878.1_g000002
rosa_roxburghii Rroxscaffold_7G00164380
rosa_rugosa Rorug06G0325100.1
rosa_samantha Rh2CG020600 Rh6AG439400 Rh6BG463600 Rh6CG451700 Rh6DG438600
rosa_wichuraiana Rw6G038040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 795
AccII CGCG 3 cut(s) 198, 457, 665
AciI CCGC 9 cut(s) 6, 196, 259, 268, 273, 365, 415, 665, 1166
AclWI GGATC 3 cut(s) 292, 460, 734
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 775, 1126
AcvI CACGTG 1 cut(s) 344
AfaI GTAC 1 cut(s) 1143
AfiI CCNNNNNNNGG 3 cut(s) 12, 288, 411
AflIII ACRYGT 1 cut(s) 341
AgeI ACCGGT 1 cut(s) 560
AgsI TTSAA 3 cut(s) 649, 1039, 1131
AjnI CCWGG 2 cut(s) 988, 1137
AjuI GAANNNNNNNTTGG 2 cut(s) 1038, 1070
AluBI AGCT 8 cut(s) 22, 58, 105, 151, 251, 448, 462, 496
AluI AGCT 8 cut(s) 22, 58, 105, 151, 251, 448, 462, 496
Alw21I GWGCWC 2 cut(s) 429, 450
AlwI GGATC 3 cut(s) 292, 460, 734
AlwNI CAGNNNCTG 1 cut(s) 785
AoxI GGCC 3 cut(s) 3, 899, 1148
ApeKI GCWGC 2 cut(s) 270, 459
ApoI RAATTY 2 cut(s) 775, 1126
AsiGI ACCGGT 1 cut(s) 560
AspLEI GCGC 4 cut(s) 200, 267, 354, 459
AspS9I GGNCC 4 cut(s) 15, 432, 707, 899
AsuC2I CCSGG 1 cut(s) 1155
AsuHPI GGTGA 4 cut(s) 248, 575, 784, 941
AvaII GGWCC 3 cut(s) 15, 432, 707
BanII GRGCYC 1 cut(s) 450
BbrPI CACGTG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 429, 450
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 257, 471
BccI CCATC 2 cut(s) 889, 1085
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 2 cut(s) 990, 1139
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 1 cut(s) 1155
BfoI RGCGCY 2 cut(s) 268, 355
BfuAI ACCTGC 1 cut(s) 795
BglI GCCNNNNNGGC 1 cut(s) 273
BisI GCNGC 5 cut(s) 6, 268, 271, 274, 460
BlpI GCTNAGC 1 cut(s) 800
BlsI GCNGC 5 cut(s) 7, 269, 272, 275, 461
Bme1390I CCNGG 3 cut(s) 990, 1139, 1155
Bme18I GGWCC 3 cut(s) 15, 432, 707
BmgT120I GGNCC 4 cut(s) 15, 432, 707, 899
BmiI GGNNCC 4 cut(s) 17, 277, 434, 900
BmrFI CCNGG 3 cut(s) 990, 1139, 1155
BmsI GCATC 5 cut(s) 625, 742, 832, 927, 986
BpiI GAAGAC 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 1155
BsaAI YACGTR 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 819
BsaJI CCNNGG 4 cut(s) 155, 283, 902, 1121
BsaWI WCCGGW 3 cut(s) 28, 429, 560
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 288, 411
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 2 cut(s) 17, 39
Bse8I GATNNNNATC 1 cut(s) 819
BseBI CCWGG 2 cut(s) 990, 1139
BseDI CCNNGG 4 cut(s) 155, 283, 902, 1121
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 3 cut(s) 12, 288, 411
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 17, 39
BseRI GAGGAG 2 cut(s) 135, 268
BseXI GCAGC 2 cut(s) 257, 471
BseYI CCCAGC 1 cut(s) 18
Bsh1236I CGCG 3 cut(s) 198, 457, 665
BshFI GGCC 3 cut(s) 5, 901, 1150
BshTI ACCGGT 1 cut(s) 560
BsiHKAI GWGCWC 2 cut(s) 429, 450
BsiSI CCGG 5 cut(s) 29, 430, 441, 561, 1155
BslFI GGGAC 3 cut(s) 418, 602, 697
BslI CCNNNNNNNGG 3 cut(s) 12, 288, 411
BsmFI GGGAC 3 cut(s) 418, 602, 697
BsnI GGCC 3 cut(s) 5, 901, 1150
Bsp1286I GDGCHC 2 cut(s) 429, 450
Bsp143I GATC 4 cut(s) 297, 465, 726, 820
Bsp1720I GCTNAGC 1 cut(s) 800
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 9 cut(s) 6, 196, 259, 268, 273, 365, 415, 665, 1166
BspANI GGCC 3 cut(s) 5, 901, 1150
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 3 cut(s) 198, 457, 665
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 4 cut(s) 17, 277, 434, 900
BspMI ACCTGC 1 cut(s) 795
BspPI GGATC 3 cut(s) 292, 460, 734
BsrFI RCCGGY 1 cut(s) 560
BsrI ACTGG 2 cut(s) 17, 39
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 4 cut(s) 155, 283, 902, 1121
BssMI GATC 4 cut(s) 297, 465, 726, 820
BssT1I CCWWGG 2 cut(s) 155, 1121
Bst2UI CCWGG 2 cut(s) 990, 1139
Bst4CI ACNGT 2 cut(s) 530, 865
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 6 cut(s) 107, 111, 263, 290, 350, 446
BstDEI CTNAG 2 cut(s) 147, 800
BstDSI CCRYGG 2 cut(s) 155, 283
BstFNI CGCG 3 cut(s) 198, 457, 665
BstH2I RGCGCY 2 cut(s) 268, 355
BstHHI GCGC 4 cut(s) 200, 267, 354, 459
BstKTI GATC 4 cut(s) 300, 468, 729, 823
BstMBI GATC 4 cut(s) 297, 465, 726, 820
BstMWI GCNNNNNNNGC 4 cut(s) 157, 267, 273, 454
BstNI CCWGG 2 cut(s) 990, 1139
BstSCI CCNGG 3 cut(s) 988, 1137, 1153
BstUI CGCG 3 cut(s) 198, 457, 665
BstV1I GCAGC 2 cut(s) 257, 471
BstV2I GAAGAC 1 cut(s) 498
BsuRI GGCC 3 cut(s) 5, 901, 1150
BtgI CCRYGG 2 cut(s) 155, 283
BtgZI GCGATG 1 cut(s) 711
BveI ACCTGC 1 cut(s) 795
Cac8I GCNNGC 6 cut(s) 107, 111, 263, 290, 350, 446
CaiI CAGNNNCTG 1 cut(s) 785
CciI TCATGA 1 cut(s) 823
CfoI GCGC 4 cut(s) 200, 267, 354, 459
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 4 cut(s) 15, 432, 707, 899
CsiI ACCWGGT 1 cut(s) 1137
Csp6I GTAC 1 cut(s) 1142
CspAI ACCGGT 1 cut(s) 560
CviAII CATG 5 cut(s) 156, 677, 824, 839, 1188
CviQI GTAC 1 cut(s) 1142
DdeI CTNAG 2 cut(s) 147, 800
DpnI GATC 4 cut(s) 299, 467, 728, 822
DpnII GATC 4 cut(s) 297, 465, 726, 820
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 448
Eco130I CCWWGG 2 cut(s) 155, 1121
Eco24I GRGCYC 1 cut(s) 450
Eco47I GGWCC 3 cut(s) 15, 432, 707
Eco53kI GAGCTC 1 cut(s) 448
Eco72I CACGTG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 448
EcoRI GAATTC 2 cut(s) 775, 1126
EcoRII CCWGG 2 cut(s) 988, 1137
EcoT14I CCWWGG 2 cut(s) 155, 1121
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 155, 1121
FaeI CATG 5 cut(s) 159, 680, 827, 842, 1191
FaqI GGGAC 3 cut(s) 418, 602, 697
FatI CATG 5 cut(s) 155, 676, 823, 838, 1187
FauI CCCGC 1 cut(s) 408
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 5 cut(s) 6, 268, 271, 274, 460
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 5 cut(s) 6, 268, 271, 274, 460
GlaI GCGC 4 cut(s) 199, 266, 353, 458
GluI GCNGC 5 cut(s) 6, 268, 271, 274, 460
GsaI CCCAGC 1 cut(s) 22
HaeII RGCGCY 2 cut(s) 268, 355
HaeIII GGCC 3 cut(s) 5, 901, 1150
HapII CCGG 5 cut(s) 29, 430, 441, 561, 1155
HhaI GCGC 4 cut(s) 200, 267, 354, 459
Hin1II CATG 5 cut(s) 159, 680, 827, 842, 1191
Hin6I GCGC 4 cut(s) 198, 265, 352, 457
HinP1I GCGC 4 cut(s) 198, 265, 352, 457
HindIII AAGCTT 1 cut(s) 249
HpaII CCGG 5 cut(s) 29, 430, 441, 561, 1155
HphI GGTGA 4 cut(s) 248, 575, 784, 941
Hpy166II GTNNAC 4 cut(s) 229, 331, 372, 835
Hpy188I TCNGA 8 cut(s) 83, 89, 558, 631, 885, 982, 1033, 1082
Hpy188III TCNNGA 3 cut(s) 245, 824, 1103
Hpy8I GTNNAC 4 cut(s) 229, 331, 372, 835
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 251, 385, 907
HpyCH4III ACNGT 2 cut(s) 530, 865
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 689, 755, 845
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 267, 273, 454
HpyF3I CTNAG 2 cut(s) 147, 800
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 159, 680, 827, 842, 1191
HspAI GCGC 4 cut(s) 198, 265, 352, 457
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 4 cut(s) 297, 465, 726, 820
LmnI GCTCC 5 cut(s) 27, 156, 171, 281, 432
Lsp1109I GCAGC 2 cut(s) 257, 471
LweI GCATC 5 cut(s) 625, 742, 832, 927, 986
MabI ACCWGGT 1 cut(s) 1137
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 98, 563
MalI GATC 4 cut(s) 299, 467, 728, 822
MboI GATC 4 cut(s) 297, 465, 726, 820
MboII GAAGA 3 cut(s) 498, 502, 533
MhlI GDGCHC 2 cut(s) 429, 450
MluCI AATT 9 cut(s) 408, 595, 775, 853, 889, 1003, 1106, 1126, 1132
MlyI GAGTC 3 cut(s) 99, 234, 520
MmeI TCCRAC 1 cut(s) 240
MspA1I CMGCKG 4 cut(s) 8, 105, 270, 367
MspI CCGG 5 cut(s) 29, 430, 441, 561, 1155
MspR9I CCNGG 3 cut(s) 990, 1139, 1155
MvaI CCWGG 2 cut(s) 990, 1139
MvnI CGCG 3 cut(s) 198, 457, 665
MwoI GCNNNNNNNGC 4 cut(s) 157, 267, 273, 454
NciI CCSGG 1 cut(s) 1155
NcoI CCATGG 1 cut(s) 155
NdeII GATC 4 cut(s) 297, 465, 726, 820
NlaIII CATG 5 cut(s) 159, 680, 827, 842, 1191
NlaIV GGNNCC 4 cut(s) 17, 277, 434, 900
NmeAIII GCCGAG 2 cut(s) 765, 927
NmuCI GTSAC 2 cut(s) 98, 563
PagI TCATGA 1 cut(s) 823
PfeI GAWTC 8 cut(s) 41, 84, 393, 479, 553, 870, 1067, 1099
PfoI TCCNGGA 1 cut(s) 988
PinAI ACCGGT 1 cut(s) 560
PkrI GCNGC 5 cut(s) 7, 269, 272, 275, 461
PleI GAGTC 3 cut(s) 98, 233, 519
PmaCI CACGTG 1 cut(s) 344
PmlI CACGTG 1 cut(s) 344
PpsI GAGTC 3 cut(s) 98, 233, 519
Ppu21I YACGTR 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 988, 1137
PspCI CACGTG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 2 cut(s) 988, 1137
PspN4I GGNNCC 4 cut(s) 17, 277, 434, 900
PspPI GGNCC 4 cut(s) 15, 432, 707, 899
PstNI CAGNNNCTG 1 cut(s) 785
PvuII CAGCTG 1 cut(s) 105
RsaI GTAC 1 cut(s) 1143
RsaNI GTAC 1 cut(s) 1142
SacI GAGCTC 1 cut(s) 450
SatI GCNGC 5 cut(s) 6, 268, 271, 274, 460
Sau3AI GATC 4 cut(s) 297, 465, 726, 820
Sau96I GGNCC 4 cut(s) 15, 432, 707, 899
SchI GAGTC 3 cut(s) 99, 234, 520
ScrFI CCNGG 3 cut(s) 990, 1139, 1155
SduI GDGCHC 2 cut(s) 429, 450
SexAI ACCWGGT 1 cut(s) 1137
SfaNI GCATC 5 cut(s) 625, 742, 832, 927, 986
SinI GGWCC 3 cut(s) 15, 432, 707
Sse9I AATT 9 cut(s) 408, 595, 775, 853, 889, 1003, 1106, 1126, 1132
SsiI CCGC 9 cut(s) 6, 196, 259, 268, 273, 365, 415, 665, 1166
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 3 cut(s) 988, 1137, 1153
StyI CCWWGG 2 cut(s) 155, 1121
TaaI ACNGT 2 cut(s) 530, 865
TaiI ACGT 1 cut(s) 346
TaqI TCGA 4 cut(s) 303, 396, 509, 873
TasI AATT 9 cut(s) 408, 595, 775, 853, 889, 1003, 1106, 1126, 1132
TauI GCSGC 3 cut(s) 8, 270, 276
TfiI GAWTC 8 cut(s) 41, 84, 393, 479, 553, 870, 1067, 1099
TseFI GTSAC 2 cut(s) 98, 563
TseI GCWGC 2 cut(s) 270, 459
Tsp45I GTSAC 2 cut(s) 98, 563
TspDTI ATGAA 5 cut(s) 595, 627, 902, 957, 1059
TspGWI ACGGA 3 cut(s) 307, 699, 1034
VpaK11BI GGWCC 3 cut(s) 15, 432, 707
XapI RAATTY 2 cut(s) 775, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.