Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016479

Physical Location & Seq

Genomic Coordinates Forward (+)

4351837 .. 4352382

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05013.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGACAAAGCATGGTGTAGCTTGCTCCTTCACCAGCACCCTAGCTCTCGGGAGATCGCATATCAAGACGCGCTGGCCGAGCAATCAATATGTGACTCGTGATGATTACATCGCGGAATGCTCTTGTTTAGTGGAGTCCTTGGGTGAGATTTTTCGTGTGACAGCGGTTTTCGTAGGGAGCTCGGATGATTTTTCCGATCTAGAACTGTATTTTGAGGTCTATAAGGTGAGTTTCATGACTAGACCAAATGGCTACGGTTTCGCTAGATGGGAGAAAGCGGAGGATTTAGGTAACAGATTTATCATTTGGTGTCAAAAACAATCTCCGATAGCATTATCTGCCTCAGATTTTACAGAGTTTGAAGAAAGCTCGATTTACTATTTTCTCTGTGGTGGCATTTTCAAGTACAACTTTGTTCCCAATCTGTCCCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

147

Amino Acids

16.73

Weight (kDa)

5.68

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	16 - 128	2.3e-10	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55150
fragaria_vesca	FvH4_4g05013
rosa_chinensis	RchiOBHm_Chr6g0303821
rosa_laevigata	RLG00000011041
rosa_multiflora	Rmu_co8503885.1_g000001 Rmu_sc0012878.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164380
rosa_rugosa	Rorug06G0325100.1
rosa_samantha	Rh2CG020600 Rh6AG439400 Rh6BG463600 Rh6CG451700 Rh6DG438600
rosa_wichuraiana	Rw6G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	73, 116
AciI	CCGC	3 cut(s)	116, 167, 281
AcoI	YGGCCR	1 cut(s)	77
AfaI	GTAC	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	365, 406
AluBI	AGCT	4 cut(s)	23, 47, 183, 372
AluI	AGCT	4 cut(s)	23, 47, 183, 372
Alw21I	GWGCWC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	25, 158, 241
AvaI	CYCGRG	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	185
BccI	CCATC	1 cut(s)	264
BfaI	CTAG	4 cut(s)	44, 203, 243, 267
BmeT110I	CYCGRG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	360
Bsh1236I	CGCG	2 cut(s)	73, 116
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	56, 199
BspACI	CCGC	3 cut(s)	116, 167, 281
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	359
BspFNI	CGCG	2 cut(s)	73, 116
BspHI	TCATGA	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	56, 199
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	210, 260
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	25, 77
BstDEI	CTNAG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	2 cut(s)	73, 116
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	59, 202
BstMBI	GATC	2 cut(s)	56, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 341
BstUI	CGCG	2 cut(s)	73, 116
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	25, 77
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	75
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	14, 238
CviJI	RGCY	6 cut(s)	23, 47, 79, 183, 255, 372
CviKI_1	RGCY	6 cut(s)	23, 47, 79, 183, 255, 372
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	2 cut(s)	58, 201
DpnII	GATC	2 cut(s)	56, 199
EaeI	YGGCCR	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	17, 241
FaiI	YATR	5 cut(s)	15, 63, 93, 225, 239
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	2 cut(s)	13, 237
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	4 cut(s)	44, 203, 243, 267
GlaI	GCGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	79
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	17, 241
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	97, 137
HphI	GGTGA	3 cut(s)	25, 158, 241
Hpy188I	TCNGA	4 cut(s)	187, 199, 330, 349
Hpy188III	TCNNGA	5 cut(s)	52, 67, 101, 203, 238
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	210, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 341
HpyF3I	CTNAG	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	17, 241
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	56, 199
LmnI	GCTCC	2 cut(s)	32, 180
LpnPI	CCDG	2 cut(s)	49, 61
MaeI	CTAG	4 cut(s)	44, 203, 243, 267
MaeIII	GTNAC	3 cut(s)	94, 160, 293
MalI	GATC	2 cut(s)	58, 201
MboI	GATC	2 cut(s)	56, 199
MboII	GAAGA	2 cut(s)	16, 377
MhlI	GDGCHC	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	91, 146
MnlI	CCTC	3 cut(s)	211, 277, 355
MspA1I	CMGCKG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	125
MvnI	CGCG	2 cut(s)	73, 116
MwoI	GCNNNNNNNGC	2 cut(s)	81, 341
NdeII	GATC	2 cut(s)	56, 199
NlaIII	CATG	2 cut(s)	17, 241
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	94, 160
PagI	TCATGA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	125
PleI	GAGTC	2 cut(s)	91, 145
PpsI	GAGTC	2 cut(s)	91, 145
Psp124BI	GAGCTC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	56, 199
SchI	GAGTC	2 cut(s)	91, 146
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	7 cut(s)	25, 49, 185, 222, 231, 295, 374
SsiI	CCGC	3 cut(s)	116, 167, 281
SspMI	CTAG	4 cut(s)	44, 203, 243, 267
SstI	GAGCTC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	210, 260
TaqI	TCGA	1 cut(s)	374
TatI	WGTACW	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	94, 160
Tsp45I	GTSAC	2 cut(s)	94, 160
TspDTI	ATGAA	2 cut(s)	17, 226
XbaI	TCTAGA	1 cut(s)	202
XspI	CTAG	4 cut(s)	44, 203, 243, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.