Rh2CG020600

Protein mrp homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016479
Physical Location & Seq
Forward (+)
1644496 .. 1646007
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG020600.1

Sequence Viewer

Length: 483 bp
ATGAAATTCTTGGGAGAGCTGGATTACCTTGTTGTTGACATGCCCCCTAGAACTGGTGATATTCAGCTTACTTTGTGCCAGATTACTTCTTTGCTCAGTTGGCGGAATTCTTCTTTTACCAGAGGGTCTAGATTACTTCTGTCATCAGTTGGCGGAGTTCTTCTAGTGCTAGAGGGTCCGCGTGGTAGATTACTTCTTAATTTCGTCACTTGGCGGAATTCTTCTACCAGAGCGTGGCTGACTTCATCTAGATGGCGCTGTCTCATACAGAAAACCAGTGTTCTGCGCAAACCATTCTATGTTCCCTTCATTACCAGTGTAGACAAAGATTGGAGCATTGCTCTTGGCACCTCCCCAGAACGTCTCATTTATCAAATACCTCTGTTGAAAAGATTCATAGCTGTTGGGATAGTAATTGAAATGATCAAGGACTTGGGTGAAGTATCTGGTTCTGTAAAGTTGGTTTTGACGAGCAGAAAGTGA

Protein Analysis

160

Amino Acids

18.1

Weight (kDa)

10.38

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParA PF10609 5 - 29 1.8e-07 NUBPL iron-transfer P-loop NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55150
fragaria_vesca FvH4_4g05013
rosa_chinensis RchiOBHm_Chr6g0303821
rosa_laevigata RLG00000011041
rosa_multiflora Rmu_co8503885.1_g000001 Rmu_sc0012878.1_g000002
rosa_roxburghii Rroxscaffold_7G00164380
rosa_rugosa Rorug06G0325100.1
rosa_samantha Rh2CG020600 Rh6AG439400 Rh6BG463600 Rh6CG451700 Rh6DG438600
rosa_wichuraiana Rw6G038040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 234
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 181
AciI CCGC 4 cut(s) 103, 153, 179, 214
AcsI RAATTY 3 cut(s) 5, 106, 217
AfiI CCNNNNNNNGG 2 cut(s) 53, 234
AgsI TTSAA 2 cut(s) 388, 419
AluBI AGCT 3 cut(s) 19, 67, 401
AluI AGCT 3 cut(s) 19, 67, 401
Alw26I GTCTC 2 cut(s) 266, 368
ApoI RAATTY 3 cut(s) 5, 106, 217
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 2 cut(s) 258, 288
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 68, 449
AvaII GGWCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 347
BccI CCATC 1 cut(s) 246
BclI TGATCA 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 266, 368
BfaI CTAG 5 cut(s) 48, 129, 164, 170, 249
BfoI RGCGCY 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 177, 349
BplI GAGNNNNNCTC 2 cut(s) 325, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 234
Bse1I ACTGG 3 cut(s) 58, 276, 315
Bse3DI GCAATG 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 53, 234
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 109
BseNI ACTGG 3 cut(s) 58, 276, 315
Bsh1236I CGCG 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 53, 234
BsmAI GTCTC 2 cut(s) 266, 368
BsmBI CGTCTC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 423
BspACI CCGC 4 cut(s) 103, 153, 179, 214
BspCNI CTCAG 1 cut(s) 108
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 177, 349
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 3 cut(s) 58, 276, 315
BssMI GATC 1 cut(s) 423
BstDEI CTNAG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 181
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 2 cut(s) 258, 288
BstKTI GATC 1 cut(s) 426
BstMAI GTCTC 2 cut(s) 266, 368
BstMBI GATC 1 cut(s) 423
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 43
BstUI CGCG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 283, 322
CfoI GCGC 2 cut(s) 258, 288
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 19, 67, 238, 401
CviKI_1 RGCY 4 cut(s) 19, 67, 238, 401
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 425
DpnII GATC 1 cut(s) 423
EciI GGCGGA 3 cut(s) 118, 168, 229
Eco47I GGWCC 1 cut(s) 176
EcoRI GAATTC 2 cut(s) 106, 217
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 1 cut(s) 43
FaiI YATR 4 cut(s) 41, 266, 300, 398
FatI CATG 1 cut(s) 39
FbaI TGATCA 1 cut(s) 423
FblI GTMKAC 1 cut(s) 321
FspBI CTAG 5 cut(s) 48, 129, 164, 170, 249
FspI TGCGCA 1 cut(s) 287
GlaI GCGC 2 cut(s) 257, 287
HaeII RGCGCY 1 cut(s) 259
HhaI GCGC 2 cut(s) 258, 288
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 2 cut(s) 256, 286
HinP1I GCGC 2 cut(s) 256, 286
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 393
HphI GGTGA 2 cut(s) 68, 449
Hpy166II GTNNAC 2 cut(s) 37, 322
Hpy188III TCNNGA 2 cut(s) 129, 249
Hpy8I GTNNAC 2 cut(s) 37, 322
HpyAV CCTTC 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 2 cut(s) 256, 286
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 9 cut(s) 5, 39, 92, 133, 241, 289, 328, 369, 432
MaeI CTAG 5 cut(s) 48, 129, 164, 170, 249
MaeII ACGT 1 cut(s) 361
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 425
MboI GATC 1 cut(s) 423
MboII GAAGA 3 cut(s) 102, 152, 213
MluCI AATT 5 cut(s) 5, 106, 199, 217, 414
MnlI CCTC 4 cut(s) 116, 166, 361, 390
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 250
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 1 cut(s) 423
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 2 cut(s) 177, 349
NmuCI GTSAC 1 cut(s) 205
NsbI TGCGCA 1 cut(s) 287
NspI RCATGY 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 393
PflMI CCANNNNNTGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 177, 349
PspPI GGNCC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 250
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 1 cut(s) 423
Sau96I GGNCC 1 cut(s) 176
SetI ASST 7 cut(s) 21, 30, 69, 353, 364, 382, 403
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 250
Sse9I AATT 5 cut(s) 5, 106, 199, 217, 414
SsiI CCGC 4 cut(s) 103, 153, 179, 214
SspMI CTAG 5 cut(s) 48, 129, 164, 170, 249
TaiI ACGT 1 cut(s) 364
TasI AATT 5 cut(s) 5, 106, 199, 217, 414
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 2 cut(s) 283, 322
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 4 cut(s) 17, 234, 298, 385
TspRI CASTG 2 cut(s) 283, 322
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 3 cut(s) 5, 106, 217
XbaI TCTAGA 2 cut(s) 128, 248
XceI RCATGY 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 5 cut(s) 48, 129, 164, 170, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.