Rroxscaffold_7G00164380

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016479
Physical Location & Seq
Forward (+)
6375346 .. 6376383
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164380.1

Sequence Viewer

Length: 1038 bp
ATGGCTTATGCTCCCCCAATCCCAACCCAACCAATCACACCGCGCCTTTTACAACCTCTCCAACAGCAGAGTCCACTTCCTCCACCTTCCAGAAGCTTCTCACCGCAAGCGCCGCTGCGGCTCCTCCCACGGCTGGCTTGTGATCCTGGACGAAACCCCTGCGTCCTCCTTGTAAACCCCCTGACACGTGGCAAGCGCCACCTCCCTCCGCTGTCCACCTTCCCTAATGTTGTTGGTTTCGATTACTCCCAAATTGGGCGGGAATATGTGCTTCGGTCCCTGTCCGGCGAGCTCTACACGCGCAGCTTGATCCAAATGCGTGATTCCTTTGTGAAGAAGCTGGTGCTGTCTACGAGTCCAAGGGAAGAAAACGGGTTTATTGCCCTGACGATTGTGAATCAGACCGGTGACTTGGCGTTTTGTAGGGAGGGGGACGAGAATTGGAGTTTCATAGATGAAGCAAGATGTTATTCAGAGGATGCCATTTCTTTCAATGGCTTGTTTTACGCGGTTGATAATCATGGCATTGTTGCAGAGTGCGATGTGAAAGGTCCGTCCCCTGTTGTTAGGATCATCCAAACGCCGAGATTGGATGATGCAGATATGAGGTATTTGGTGAATTCAGGGGCTGATTTGTTGTTGCTTAGCAGGTATTTGGATGTTGATCATGATATTGTGAACGATGATGCAAATGTGAATTACAGAACTGTGGGATTCGATGTTTTTAGGATGAATTGGATGGGGCCGAGGTGGGAGAAGGTTGAGAACTTGGGTGATAGGATGCTGTTTATTGGGGAAAACTCGTCATTTTCATTGTCGGCATCTGATTTTCCAGGATCTGTGGGGAATTGTATCTATTTTACAGATGATTACTCCGAGTTGAACTATGAAAGTGGAGTTGGGGGATATGATTCTGGCATTTTCAGATTATGGGATGGAACGATTCAGGAATTGCCCCCTTATCTAAGGAATTCAGATTACCAGGTACATTGGCCTCCCGGCTCTCTACCGCTTTGGGTTATCCCCAATCCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

345

Amino Acids

38.83

Weight (kDa)

4.82

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 54 - 304 2.3e-54 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016479)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55150
fragaria_vesca FvH4_4g05013
rosa_chinensis RchiOBHm_Chr6g0303821
rosa_laevigata RLG00000011041
rosa_multiflora Rmu_co8503885.1_g000001 Rmu_sc0012878.1_g000002
rosa_roxburghii Rroxscaffold_7G00164380
rosa_rugosa Rorug06G0325100.1
rosa_samantha Rh2CG020600 Rh6AG439400 Rh6BG463600 Rh6CG451700 Rh6DG438600
rosa_wichuraiana Rw6G038040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 639
AccI GTMKAC 1 cut(s) 350
AccII CGCG 3 cut(s) 43, 301, 509
AciI CCGC 8 cut(s) 41, 104, 113, 118, 209, 259, 509, 1010
AclWI GGATC 4 cut(s) 137, 304, 578, 844
AcsI RAATTY 2 cut(s) 619, 970
AcvI CACGTG 1 cut(s) 188
AfaI GTAC 1 cut(s) 987
AfiI CCNNNNNNNGG 2 cut(s) 133, 255
AflIII ACRYGT 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 404
AgsI TTSAA 2 cut(s) 493, 883
AjnI CCWGG 3 cut(s) 145, 832, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AluBI AGCT 4 cut(s) 96, 292, 306, 340
AluI AGCT 4 cut(s) 96, 292, 306, 340
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 4 cut(s) 137, 304, 578, 844
AlwNI CAGNNNCTG 2 cut(s) 629, 839
AoxI GGCC 2 cut(s) 743, 992
ApeKI GCWGC 2 cut(s) 115, 303
ApoI RAATTY 2 cut(s) 619, 970
AsiGI ACCGGT 1 cut(s) 404
AspLEI GCGC 4 cut(s) 45, 112, 198, 303
AspS9I GGNCC 3 cut(s) 276, 551, 743
AsuC2I CCSGG 1 cut(s) 999
AsuHPI GGTGA 4 cut(s) 93, 419, 628, 785
AvaII GGWCC 2 cut(s) 276, 551
BanII GRGCYC 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 102, 315
BccI CCATC 2 cut(s) 733, 929
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciT130I CCWGG 3 cut(s) 147, 834, 983
BclI TGATCA 1 cut(s) 664
BcnI CCSGG 1 cut(s) 999
BfoI RGCGCY 2 cut(s) 113, 199
BfuAI ACCTGC 1 cut(s) 639
BglI GCCNNNNNGGC 1 cut(s) 118
BisI GCNGC 4 cut(s) 113, 116, 119, 304
BlpI GCTNAGC 1 cut(s) 644
BlsI GCNGC 4 cut(s) 114, 117, 120, 305
Bme1390I CCNGG 4 cut(s) 147, 834, 983, 999
Bme18I GGWCC 2 cut(s) 276, 551
BmgT120I GGNCC 3 cut(s) 276, 551, 743
BmiI GGNNCC 3 cut(s) 122, 278, 744
BmrFI CCNGG 4 cut(s) 147, 834, 983, 999
BmsI GCATC 5 cut(s) 469, 586, 676, 771, 830
Bpu1102I GCTNAGC 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 999
BsaAI YACGTR 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 3 cut(s) 128, 359, 746
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 255
Bse118I RCCGGY 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 3 cut(s) 147, 834, 983
BseDI CCNNGG 3 cut(s) 128, 359, 746
BseGI GGATG 8 cut(s) 484, 573, 598, 664, 735, 744, 786, 940
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 133, 255
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 102, 315
Bsh1236I CGCG 3 cut(s) 43, 301, 509
BshFI GGCC 2 cut(s) 745, 994
BshTI ACCGGT 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 3 cut(s) 285, 405, 999
BslFI GGGAC 3 cut(s) 262, 446, 541
BslI CCNNNNNNNGG 2 cut(s) 133, 255
BsmFI GGGAC 3 cut(s) 262, 446, 541
BsnI GGCC 2 cut(s) 745, 994
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 5 cut(s) 142, 309, 570, 664, 836
Bsp1720I GCTNAGC 1 cut(s) 644
BspACI CCGC 8 cut(s) 41, 104, 113, 118, 209, 259, 509, 1010
BspANI GGCC 2 cut(s) 745, 994
BspFNI CGCG 3 cut(s) 43, 301, 509
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 122, 278, 744
BspMI ACCTGC 1 cut(s) 639
BspPI GGATC 4 cut(s) 137, 304, 578, 844
BsrFI RCCGGY 1 cut(s) 404
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 3 cut(s) 128, 359, 746
BssMI GATC 5 cut(s) 142, 309, 570, 664, 836
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 3 cut(s) 147, 834, 983
Bst4CI ACNGT 1 cut(s) 709
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 4 cut(s) 108, 135, 194, 290
BstDEI CTNAG 2 cut(s) 644, 965
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 8 cut(s) 484, 573, 598, 664, 735, 744, 786, 940
BstFNI CGCG 3 cut(s) 43, 301, 509
BstH2I RGCGCY 2 cut(s) 113, 199
BstHHI GCGC 4 cut(s) 45, 112, 198, 303
BstKTI GATC 5 cut(s) 145, 312, 573, 667, 839
BstMBI GATC 5 cut(s) 142, 309, 570, 664, 836
BstMWI GCNNNNNNNGC 3 cut(s) 112, 118, 298
BstNI CCWGG 3 cut(s) 147, 834, 983
BstSCI CCNGG 4 cut(s) 145, 832, 981, 997
BstUI CGCG 3 cut(s) 43, 301, 509
BstV1I GCAGC 2 cut(s) 102, 315
BstX2I RGATCY 1 cut(s) 836
BstYI RGATCY 1 cut(s) 836
BsuRI GGCC 2 cut(s) 745, 994
BtgI CCRYGG 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 555
BtsCI GGATG 8 cut(s) 484, 573, 598, 664, 735, 744, 786, 940
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 4 cut(s) 108, 135, 194, 290
CaiI CAGNNNCTG 2 cut(s) 629, 839
CciI TCATGA 1 cut(s) 667
CfoI GCGC 4 cut(s) 45, 112, 198, 303
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 3 cut(s) 276, 551, 743
CseI GACGC 1 cut(s) 151
CsiI ACCWGGT 1 cut(s) 981
Csp6I GTAC 1 cut(s) 986
CspAI ACCGGT 1 cut(s) 404
CviAII CATG 3 cut(s) 521, 668, 1032
CviQI GTAC 1 cut(s) 986
DdeI CTNAG 2 cut(s) 644, 965
DpnI GATC 5 cut(s) 144, 311, 572, 666, 838
DpnII GATC 5 cut(s) 142, 309, 570, 664, 836
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 2 cut(s) 276, 551
Eco53kI GAGCTC 1 cut(s) 292
Eco72I CACGTG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 292
EcoRI GAATTC 2 cut(s) 619, 970
EcoRII CCWGG 3 cut(s) 145, 832, 981
EcoT14I CCWWGG 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 3 cut(s) 524, 671, 1035
FaqI GGGAC 3 cut(s) 262, 446, 541
FatI CATG 3 cut(s) 520, 667, 1031
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 1 cut(s) 664
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 4 cut(s) 113, 116, 119, 304
FokI GGATG 8 cut(s) 491, 560, 605, 671, 742, 751, 793, 947
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 4 cut(s) 113, 116, 119, 304
GlaI GCGC 4 cut(s) 44, 111, 197, 302
GluI GCNGC 4 cut(s) 113, 116, 119, 304
HaeII RGCGCY 2 cut(s) 113, 199
HaeIII GGCC 2 cut(s) 745, 994
HapII CCGG 3 cut(s) 285, 405, 999
HgaI GACGC 1 cut(s) 151
HhaI GCGC 4 cut(s) 45, 112, 198, 303
Hin1II CATG 3 cut(s) 524, 671, 1035
Hin6I GCGC 4 cut(s) 43, 110, 196, 301
HinP1I GCGC 4 cut(s) 43, 110, 196, 301
HindIII AAGCTT 1 cut(s) 94
HinfI GANTC 7 cut(s) 70, 323, 355, 397, 714, 911, 943
HpaII CCGG 3 cut(s) 285, 405, 999
HphI GGTGA 4 cut(s) 93, 419, 628, 785
Hpy166II GTNNAC 5 cut(s) 74, 175, 216, 351, 679
Hpy188I TCNGA 6 cut(s) 402, 475, 826, 877, 926, 976
Hpy188III TCNNGA 3 cut(s) 90, 668, 947
Hpy8I GTNNAC 5 cut(s) 74, 175, 216, 351, 679
HpyAV CCTTC 3 cut(s) 96, 229, 751
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 533, 599, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 118, 298
HpyF3I CTNAG 2 cut(s) 644, 965
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 3 cut(s) 524, 671, 1035
HspAI GCGC 4 cut(s) 43, 110, 196, 301
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 5 cut(s) 142, 309, 570, 664, 836
LmnI GCTCC 2 cut(s) 16, 126
Lsp1109I GCAGC 2 cut(s) 102, 315
LweI GCATC 5 cut(s) 469, 586, 676, 771, 830
MabI ACCWGGT 1 cut(s) 981
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 407
MalI GATC 5 cut(s) 144, 311, 572, 666, 838
MboI GATC 5 cut(s) 142, 309, 570, 664, 836
MboII GAAGA 2 cut(s) 346, 377
MflI RGATCY 1 cut(s) 836
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 8 cut(s) 252, 439, 619, 697, 733, 847, 950, 970
MlyI GAGTC 2 cut(s) 79, 364
MmeI TCCRAC 1 cut(s) 85
MspA1I CMGCKG 2 cut(s) 115, 211
MspI CCGG 3 cut(s) 285, 405, 999
MspR9I CCNGG 4 cut(s) 147, 834, 983, 999
MvaI CCWGG 3 cut(s) 147, 834, 983
MvnI CGCG 3 cut(s) 43, 301, 509
MwoI GCNNNNNNNGC 3 cut(s) 112, 118, 298
NciI CCSGG 1 cut(s) 999
NdeII GATC 5 cut(s) 142, 309, 570, 664, 836
NlaIII CATG 3 cut(s) 524, 671, 1035
NlaIV GGNNCC 3 cut(s) 122, 278, 744
NmeAIII GCCGAG 2 cut(s) 609, 771
NmuCI GTSAC 1 cut(s) 407
PagI TCATGA 1 cut(s) 667
PfeI GAWTC 5 cut(s) 323, 397, 714, 911, 943
PfoI TCCNGGA 2 cut(s) 145, 832
PinAI ACCGGT 1 cut(s) 404
PkrI GCNGC 4 cut(s) 114, 117, 120, 305
PleI GAGTC 2 cut(s) 78, 363
PmaCI CACGTG 1 cut(s) 188
PmlI CACGTG 1 cut(s) 188
PpsI GAGTC 2 cut(s) 78, 363
Ppu21I YACGTR 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 3 cut(s) 145, 832, 981
PspCI CACGTG 1 cut(s) 188
PspGI CCWGG 3 cut(s) 145, 832, 981
PspN4I GGNNCC 3 cut(s) 122, 278, 744
PspPI GGNCC 3 cut(s) 276, 551, 743
PstNI CAGNNNCTG 2 cut(s) 629, 839
PsuI RGATCY 1 cut(s) 836
RsaI GTAC 1 cut(s) 987
RsaNI GTAC 1 cut(s) 986
SacI GAGCTC 1 cut(s) 294
SatI GCNGC 4 cut(s) 113, 116, 119, 304
Sau3AI GATC 5 cut(s) 142, 309, 570, 664, 836
Sau96I GGNCC 3 cut(s) 276, 551, 743
SchI GAGTC 2 cut(s) 79, 364
ScrFI CCNGG 4 cut(s) 147, 834, 983, 999
SduI GDGCHC 1 cut(s) 294
SexAI ACCWGGT 1 cut(s) 981
SfaNI GCATC 5 cut(s) 469, 586, 676, 771, 830
SinI GGWCC 2 cut(s) 276, 551
Sse9I AATT 8 cut(s) 252, 439, 619, 697, 733, 847, 950, 970
SsiI CCGC 8 cut(s) 41, 104, 113, 118, 209, 259, 509, 1010
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 4 cut(s) 145, 832, 981, 997
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 240, 717
TaqII GACCGA 1 cut(s) 264
TasI AATT 8 cut(s) 252, 439, 619, 697, 733, 847, 950, 970
TauI GCSGC 2 cut(s) 115, 121
TfiI GAWTC 5 cut(s) 323, 397, 714, 911, 943
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 2 cut(s) 115, 303
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 5 cut(s) 439, 471, 746, 801, 903
TspGWI ACGGA 1 cut(s) 543
VpaK11BI GGWCC 2 cut(s) 276, 551
XapI RAATTY 2 cut(s) 619, 970
XmiI GTMKAC 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.