Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017514

Physical Location & Seq

Genomic Coordinates Reverse (-)

22422673 .. 22424380

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCGTTGGGATAATTGCTTCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATTGTATATATTGCACAGATGAATCCTCTGATTGTCCCCATTCTAAGCGAAACAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044444 GO:0044464 GO:0044769 GO:0046961 GO:0051179 GO:0051234 GO:0055085 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP_synt_H

Protein Analysis

70

Amino Acids

7.73

Weight (kDa)

6.51

Isoelectric Point (pI)

17.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_synt_H	PF05493	3 - 67	1.4e-21	ATP synthase subunit H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55290 AT5G55290 AT5G55290
fragaria_vesca	FvH4_3g01010
malus_domestica	MD05G1357400.v1.1 MD10G1331400.v1.1
prunus_persica	Prupe.4G010800_v2.0.a1
pyrus_communis	pycom10g28090
rosa_chinensis	RchiOBHm_Chr5g0001541
rosa_roxburghii	Rroxscaffold_1G00074860
rosa_samantha	Rh5BG014700
rosa_wichuraiana	Rw5G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	83
CviJI	RGCY	1 cut(s)	84
CviKI_1	RGCY	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaiI	YATR	4 cut(s)	14, 58, 160, 162
FaqI	GGGAC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	66, 94, 175
Hpy188I	TCNGA	1 cut(s)	183
Hpy99I	CGWCG	3 cut(s)	35, 38, 130
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	75, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	197
Lsp1109I	GCAGC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	153
MluCI	AATT	2 cut(s)	45, 153
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	74, 97, 189
MunI	CAATTG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	81
NlaIV	GGNNCC	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	66, 94, 175
PkrI	GCNGC	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	83
SetI	ASST	1 cut(s)	113
SgeI	CNNG	2 cut(s)	103, 124
Sse9I	AATT	2 cut(s)	45, 153
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	2 cut(s)	45, 153
TfiI	GAWTC	3 cut(s)	66, 94, 175
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.