Rh5BG014700

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017514
Physical Location & Seq
Forward (+)
1075659 .. 1077354
1696 bp
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UTR
Exon/CDS
Intron
Rh5BG014700.1

Sequence Viewer

Length: 225 bp
ATGGGTTTCGCGGTGACAACTCTGATATTTGCAATGGTGGGAGTAATTGCTTCGCTTATGGTCAGAATCTGCTGCAGCAGAGGCGCTTCTGCTAATTTGCTTCACCTAACATTAGTTATTACTGCAGTAGTGTGCTGCTGGATGATGTATGTATTTCCATCAGAAATTTTCCTCTTCTTTTTTCAAATTTGGGTTGCAAAATTTGTTCGCATGCATTTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP_synt_H

Protein Analysis

74

Amino Acids

8.41

Weight (kDa)

8.94

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_synt_H PF05493 3 - 51 4.1e-07 ATP synthase subunit H
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55290 AT5G55290 AT5G55290
fragaria_vesca FvH4_3g01010
malus_domestica MD05G1357400.v1.1 MD10G1331400.v1.1
prunus_persica Prupe.4G010800_v2.0.a1
pyrus_communis pycom10g28090
rosa_chinensis RchiOBHm_Chr5g0001541
rosa_roxburghii Rroxscaffold_1G00074860
rosa_samantha Rh5BG014700
rosa_wichuraiana Rw5G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 11
AcsI RAATTY 3 cut(s) 165, 186, 200
AgsI TTSAA 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 72, 75, 135
ApoI RAATTY 3 cut(s) 165, 186, 200
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 25, 95
BbvI GCAGC 3 cut(s) 59, 87, 122
BccI CCATC 1 cut(s) 166
BfmI CTRYAG 2 cut(s) 73, 123
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 3 cut(s) 73, 76, 136
BlsI GCNGC 3 cut(s) 74, 77, 137
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 59, 87, 122
Bsh1236I CGCG 1 cut(s) 11
BspACI CCGC 1 cut(s) 11
BspFNI CGCG 1 cut(s) 11
BspMAI CTGCAG 2 cut(s) 77, 127
BsrDI GCAATG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 212
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 214
BstSFI CTRYAG 2 cut(s) 73, 123
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 59, 87, 122
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 212
CaiI CAGNNNCTG 1 cut(s) 69
CfoI GCGC 1 cut(s) 86
CviAII CATG 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 216
FaeI CATG 1 cut(s) 214
FaiI YATR 3 cut(s) 59, 150, 212
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 73, 76, 136
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 73, 76, 136
GlaI GCGC 1 cut(s) 85
GluI GCNGC 3 cut(s) 73, 76, 136
HaeII RGCGCY 1 cut(s) 87
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 66
HphI GGTGA 2 cut(s) 25, 95
Hpy188I TCNGA 3 cut(s) 24, 65, 163
HpyCH4V TGCA 5 cut(s) 32, 75, 125, 197, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 84
LpnPI CCDG 1 cut(s) 124
Lsp1109I GCAGC 3 cut(s) 59, 87, 122
MaeIII GTNAC 1 cut(s) 13
MboII GAAGA 1 cut(s) 166
MluCI AATT 5 cut(s) 45, 94, 165, 186, 200
MnlI CCTC 2 cut(s) 74, 182
Mph1103I ATGCAT 1 cut(s) 216
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 81
NlaIII CATG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 216
NspI RCATGY 1 cut(s) 214
PaeI GCATGC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 3 cut(s) 74, 77, 137
PstI CTGCAG 2 cut(s) 77, 127
PstNI CAGNNNCTG 1 cut(s) 69
SatI GCNGC 3 cut(s) 73, 76, 136
SetI ASST 1 cut(s) 108
SfcI CTRYAG 2 cut(s) 73, 123
SgeI CNNG 2 cut(s) 22, 151
SphI GCATGC 1 cut(s) 214
Sse9I AATT 5 cut(s) 45, 94, 165, 186, 200
SsiI CCGC 1 cut(s) 11
TasI AATT 5 cut(s) 45, 94, 165, 186, 200
TfiI GAWTC 1 cut(s) 66
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 3 cut(s) 72, 75, 135
Tsp45I GTSAC 1 cut(s) 13
XapI RAATTY 3 cut(s) 165, 186, 200
XceI RCATGY 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.