Rroxscaffold_1G00074860

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017514
Physical Location & Seq
Reverse (-)
95690617 .. 95691752
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074860.1

Sequence Viewer

Length: 213 bp
ATGGGTTTCGCGGTGACAACTCTGATATTTGCAATGGTAGGAGTGATTGCTTCGCTTATGGTCAGAATCTGCTGCAGCAGAGGCGCTTCTGCTAATTTGCTCCACCTAACATTAGTTATTACTGCAGTAGTGTGCTGCTGGATGATGTGGGCAATTGTATACGTTGCACAGATGAAACCGCTTATTGTTCCAATCCTAAGTGAAGGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP_synt_H

Protein Analysis

70

Amino Acids

7.56

Weight (kDa)

7.68

Isoelectric Point (pI)

14.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_synt_H PF05493 3 - 67 1.2e-19 ATP synthase subunit H
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55290 AT5G55290 AT5G55290
fragaria_vesca FvH4_3g01010
malus_domestica MD05G1357400.v1.1 MD10G1331400.v1.1
prunus_persica Prupe.4G010800_v2.0.a1
pyrus_communis pycom10g28090
rosa_chinensis RchiOBHm_Chr5g0001541
rosa_roxburghii Rroxscaffold_1G00074860
rosa_samantha Rh5BG014700
rosa_wichuraiana Rw5G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 11, 179
AlwNI CAGNNNCTG 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 72, 75, 135
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 25
BbvI GCAGC 3 cut(s) 59, 87, 122
BfmI CTRYAG 2 cut(s) 73, 123
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 3 cut(s) 73, 76, 136
BlsI GCNGC 3 cut(s) 74, 77, 137
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 59, 87, 122
Bsh1236I CGCG 1 cut(s) 11
BspACI CCGC 2 cut(s) 11, 179
BspFNI CGCG 1 cut(s) 11
BspMAI CTGCAG 2 cut(s) 77, 127
BsrDI GCAATG 1 cut(s) 39
BssNAI GTATAC 1 cut(s) 160
Bst1107I GTATAC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstSFI CTRYAG 2 cut(s) 73, 123
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 59, 87, 122
BstZ17I GTATAC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 69
CfoI GCGC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 197
FaiI YATR 2 cut(s) 59, 160
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 73, 76, 136
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 73, 76, 136
GlaI GCGC 1 cut(s) 85
GluI GCNGC 3 cut(s) 73, 76, 136
HaeII RGCGCY 1 cut(s) 87
HhaI GCGC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 24, 65
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 4 cut(s) 32, 75, 125, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 162
HspAI GCGC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 1 cut(s) 124
Lsp1109I GCAGC 3 cut(s) 59, 87, 122
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 13
MfeI CAATTG 1 cut(s) 153
MluCI AATT 2 cut(s) 94, 153
MnlI CCTC 1 cut(s) 74
MunI CAATTG 1 cut(s) 153
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 3 cut(s) 74, 77, 137
PstI CTGCAG 2 cut(s) 77, 127
PstNI CAGNNNCTG 1 cut(s) 69
SatI GCNGC 3 cut(s) 73, 76, 136
SetI ASST 2 cut(s) 108, 165
SfcI CTRYAG 2 cut(s) 73, 123
SgeI CNNG 2 cut(s) 22, 151
Sse9I AATT 2 cut(s) 94, 153
SsiI CCGC 2 cut(s) 11, 179
TaiI ACGT 1 cut(s) 165
TasI AATT 2 cut(s) 94, 153
TfiI GAWTC 1 cut(s) 66
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 3 cut(s) 72, 75, 135
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.