MD10G1331400.v1.1

ATP synthase subunit H

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0017514
Physical Location & Seq
Reverse (-)
40927624 .. 40929805
2182 bp
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UTR
Exon/CDS
Intron
MD10G1331400.v1.1.491

Sequence Viewer

Length: 213 bp
ATGGGTTTTGTAGTTACAACTCTGATCTTTGCAATGGTGGGCGTAATTGCTTCCCTCATGGTCAGAATCTGCTGTGGCAGAGGCGCATCGGCCAATTTGCTTCACCTTACACTAGTTATCACAGCGGTAGTGTGCTGTTGGATGATGTGGGCAATCGTATACCTTGCACAGATGAAACCACTCATTGTTCCGATCCTCACTGAAGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP_synt_H

Protein Analysis

71

Amino Acids

7.58

Weight (kDa)

7.68

Isoelectric Point (pI)

11.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_synt_H PF05493 3 - 67 7.8e-20 ATP synthase subunit H
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55290 AT5G55290 AT5G55290
fragaria_vesca FvH4_3g01010
malus_domestica MD05G1357400.v1.1 MD10G1331400.v1.1
prunus_persica Prupe.4G010800_v2.0.a1
pyrus_communis pycom10g28090
rosa_chinensis RchiOBHm_Chr5g0001541
rosa_roxburghii Rroxscaffold_1G00074860
rosa_samantha Rh5BG014700
rosa_wichuraiana Rw5G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 125
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 90
AhlI ACTAGT 1 cut(s) 112
AlwI GGATC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 69
AoxI GGCC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 112
BfaI CTAG 1 cut(s) 113
BmsI GCATC 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 39
BshFI GGCC 1 cut(s) 92
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 24, 192
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 92
BspPI GGATC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 39
BssMI GATC 2 cut(s) 24, 192
BssNAI GTATAC 1 cut(s) 160
Bst1107I GTATAC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 2 cut(s) 27, 195
BstMBI GATC 2 cut(s) 24, 192
BstZ17I GTATAC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 69
CfoI GCGC 1 cut(s) 86
CviAII CATG 1 cut(s) 58
CviJI RGCY 1 cut(s) 92
CviKI_1 RGCY 1 cut(s) 92
DpnI GATC 2 cut(s) 26, 194
DpnII GATC 2 cut(s) 24, 192
EaeI YGGCCR 1 cut(s) 90
FaeI CATG 1 cut(s) 61
FaiI YATR 2 cut(s) 59, 160
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 159
FokI GGATG 1 cut(s) 154
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 92
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 24, 65, 192
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 197
HpyCH4V TGCA 2 cut(s) 32, 167
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 2 cut(s) 24, 192
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 26, 194
MboI GATC 2 cut(s) 24, 192
MluCI AATT 2 cut(s) 45, 94
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 3 cut(s) 65, 74, 206
MspA1I CMGCKG 1 cut(s) 125
NdeII GATC 2 cut(s) 24, 192
NlaIII CATG 1 cut(s) 61
PfeI GAWTC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 69
Sau3AI GATC 2 cut(s) 24, 192
SetI ASST 2 cut(s) 108, 165
SfaNI GCATC 1 cut(s) 95
SgeI CNNG 3 cut(s) 70, 125, 176
SpeI ACTAGT 1 cut(s) 112
Sse9I AATT 2 cut(s) 45, 94
SsiI CCGC 1 cut(s) 125
SspMI CTAG 1 cut(s) 113
TasI AATT 2 cut(s) 45, 94
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.