Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0017514

Physical Location & Seq

Genomic Coordinates Forward (+)

47317994 .. 47319807

Gene Structure 1814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1357400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGTTTTGTGGTTACAACTCTAATCTTTGCAATGGTGGGCGTAATTGCTTCCCTCATGGTCAGAATTTGCTGCGGCAGAGGCGCATCAGCAAATTTGCTCCACCTTACACTTGTTATCACTGCGGTAGTGTGCTGTTGGATGATGTGGGCGATCGTATACCTTGCACAGATGAAACCACTCATTTTTCCAATCCTAACCGAAGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP_synt_H

Protein Analysis

71

Amino Acids

7.63

Weight (kDa)

7.68

Isoelectric Point (pI)

13.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_synt_H	PF05493	3 - 67	2.3e-19	ATP synthase subunit H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55290 AT5G55290 AT5G55290
fragaria_vesca	FvH4_3g01010
malus_domestica	MD05G1357400.v1.1 MD10G1331400.v1.1
prunus_persica	Prupe.4G010800_v2.0.a1
pyrus_communis	pycom10g28090
rosa_chinensis	RchiOBHm_Chr5g0001541
rosa_roxburghii	Rroxscaffold_1G00074860
rosa_samantha	Rh5BG014700
rosa_wichuraiana	Rw5G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	75, 125
AcsI	RAATTY	2 cut(s)	66, 94
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	2 cut(s)	66, 94
AspLEI	GCGC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	73, 76
BlsI	GCNGC	2 cut(s)	74, 77
BmsI	GCATC	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	75, 125
BsrDI	GCAATG	1 cut(s)	39
BssMI	GATC	1 cut(s)	153
BssNAI	GTATAC	1 cut(s)	160
Bst1107I	GTATAC	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	59
BstZ17I	GTATAC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	86
CviAII	CATG	1 cut(s)	58
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
FaeI	CATG	1 cut(s)	61
FaiI	YATR	2 cut(s)	59, 160
FatI	CATG	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	73, 76
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	73, 76
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	73, 76
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	32, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MluCI	AATT	3 cut(s)	45, 66, 94
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	65, 74
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	74, 77
Ple19I	CGATCG	1 cut(s)	156
PvuI	CGATCG	1 cut(s)	156
SatI	GCNGC	2 cut(s)	73, 76
Sau3AI	GATC	1 cut(s)	153
SetI	ASST	3 cut(s)	108, 165, 208
SfaNI	GCATC	1 cut(s)	95
SgeI	CNNG	3 cut(s)	70, 125, 176
Sse9I	AATT	3 cut(s)	45, 66, 94
SsiI	CCGC	2 cut(s)	75, 125
TasI	AATT	3 cut(s)	45, 66, 94
TauI	GCSGC	1 cut(s)	78
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	66, 94
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.