AT5G56120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017147
Physical Location & Seq
Forward (+)
22721373 .. 22722613
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56120.1

Sequence Viewer

Length: 711 bp
ATGGCCGGAACTAAAGATTCTCATGTAGTGGAGATTCCAGTAGATGAAGAGCATAAAGAGAGACAACAACAACAACAGTTGGTTGCGGTCTCAAATCCGGGAATGGGAATACTCAAAGTGATTCAGCAGCATCCGTTGTCTGAAATCTCAGAGAGTCCAGGACATTTGTTGCTTTTGAAGTTATGGCAAAGAGAAGAAGATTTGTTCTGTCGTCGTGTTCTTCTTAAAGAATCAAGACTAGAGTCAATCAAAAGAGAGATCTTTCAGCTTTGTTGTTTCTTCCTAGTCTTCCATGGGTTCTTCTTCACACTTGTCTACTCTTCTTCTTGTTCTGATGATGCTGACGTGGTGAAAAGTAATGCGGTTTGCAAGAAATGGTGGATACCTTCTGCAGTGTCATTAGCTACTTCATTGGTTCTGGTGTTTCTTGTTCAAGCTAAGCTGTTTGTGTTCTGGAAAGTTTACAGAGGTGTTAATAGGGAGAGGAATGATAATAGAACGCTTACACGGTGTGTTTTGGAGTTGAGGATGAAAGGGTCGAGCTTTGATTTGTCGAAAGAGCCGATGAGTGGGAAGAGGATGAAGAGTTCAAGCGTTGAGATCAAGTGGAAACCTGTTACTTGGTTCTCTCAGTATTTGATAACTATTGTTCTTCTTTGCTCTGCAGGGTTGTTCTTCCCGGTCTCAAAGTTCATCCTCTGCGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

27.17

Weight (kDa)

9.12

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56120
fragaria_vesca FvH4_3g41800
prunus_persica Prupe.6G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0074881
rosa_laevigata RLG00000036513
rosa_multiflora Rmu_sc0003945.1_g000017
rosa_roxburghii Rroxscaffold_1G00006690
rosa_rugosa Rorug05G0435400
rosa_samantha Rh5AG492500 Rh5BG513900 Rh5CG537600 Rh5DG526100
rosa_wichuraiana Rw5G045640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AciI CCGC 3 cut(s) 86, 362, 702
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 512
AfiI CCNNNNNNNGG 2 cut(s) 104, 569
AgsI TTSAA 3 cut(s) 178, 434, 591
AjiI CACGTC 1 cut(s) 346
AjnI CCWGG 1 cut(s) 157
AloI GAACNNNNNNTCC 2 cut(s) 571, 603
AluBI AGCT 5 cut(s) 268, 404, 437, 442, 543
AluI AGCT 5 cut(s) 268, 404, 437, 442, 543
Alw26I GTCTC 3 cut(s) 55, 94, 688
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 127
AsuC2I CCSGG 2 cut(s) 99, 680
AsuHPI GGTGA 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 159
BciVI GTATCC 1 cut(s) 375
BcnI CCSGG 2 cut(s) 99, 680
BcoDI GTCTC 3 cut(s) 55, 94, 688
BfaI CTAG 2 cut(s) 239, 284
BfmI CTRYAG 2 cut(s) 390, 663
BfuI GTATCC 1 cut(s) 375
BglII AGATCT 1 cut(s) 258
BisI GCNGC 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 3 cut(s) 99, 159, 680
BmgBI CACGTC 1 cut(s) 346
BmrFI CCNGG 3 cut(s) 99, 159, 680
BmsI GCATC 2 cut(s) 139, 328
BoxI GACNNNNGTC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 280
Bpu1102I GCTNAGC 1 cut(s) 438
BpuMI CCSGG 2 cut(s) 99, 680
BsaI GGTCTC 2 cut(s) 94, 688
BsaJI CCNNGG 1 cut(s) 292
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 569
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 4 cut(s) 130, 534, 585, 693
BseLI CCNNNNNNNGG 2 cut(s) 104, 569
BseMII CTCAG 2 cut(s) 162, 644
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 3 cut(s) 6, 98, 680
BslI CCNNNNNNNGG 2 cut(s) 104, 569
BsmAI GTCTC 3 cut(s) 55, 94, 688
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 94, 688
Bsp143I GATC 2 cut(s) 258, 600
Bsp1720I GCTNAGC 1 cut(s) 438
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 3 cut(s) 86, 362, 702
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 161, 643
BspMAI CTGCAG 2 cut(s) 394, 667
BspQI GCTCTTC 1 cut(s) 42
BspTNI GGTCTC 2 cut(s) 94, 688
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 2 cut(s) 258, 600
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 78, 510
Bst6I CTCTTC 4 cut(s) 42, 325, 569, 578
BstDEI CTNAG 3 cut(s) 148, 438, 630
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 4 cut(s) 130, 534, 585, 693
BstKTI GATC 2 cut(s) 261, 603
BstMAI GTCTC 3 cut(s) 55, 94, 688
BstMBI GATC 2 cut(s) 258, 600
BstNI CCWGG 1 cut(s) 159
BstPAI GACNNNNGTC 1 cut(s) 241
BstSCI CCNGG 3 cut(s) 97, 157, 678
BstSFI CTRYAG 2 cut(s) 390, 663
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 292
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 4 cut(s) 130, 534, 585, 693
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
CviAII CATG 2 cut(s) 23, 293
CviJI RGCY 7 cut(s) 5, 268, 404, 437, 442, 543, 562
CviKI_1 RGCY 7 cut(s) 5, 268, 404, 437, 442, 543, 562
DdeI CTNAG 3 cut(s) 148, 438, 630
DpnI GATC 2 cut(s) 260, 602
DpnII GATC 2 cut(s) 258, 600
DraIII CACNNNGTG 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 42, 325, 569, 578
EarI CTCTTC 4 cut(s) 42, 325, 569, 578
Eco130I CCWWGG 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 94, 688
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 2 cut(s) 26, 296
FaiI YATR 4 cut(s) 24, 54, 184, 294
FatI CATG 2 cut(s) 22, 292
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 4 cut(s) 117, 541, 592, 680
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 2 cut(s) 239, 284
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 6, 98, 680
Hin1II CATG 2 cut(s) 26, 296
HinfI GANTC 6 cut(s) 17, 34, 121, 154, 230, 242
HpaII CCGG 3 cut(s) 6, 98, 680
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 316, 463
Hpy188I TCNGA 3 cut(s) 142, 151, 334
Hpy188III TCNNGA 2 cut(s) 234, 454
Hpy8I GTNNAC 2 cut(s) 316, 463
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 78, 510
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 369, 392, 665
HpyF3I CTNAG 3 cut(s) 148, 438, 630
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 2 cut(s) 26, 296
Kzo9I GATC 2 cut(s) 258, 600
LguI GCTCTTC 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 139, 328
MaeI CTAG 2 cut(s) 239, 284
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 616
MalI GATC 2 cut(s) 260, 602
MboI GATC 2 cut(s) 258, 600
MflI RGATCY 1 cut(s) 258
MlyI GAGTC 2 cut(s) 163, 251
MnlI CCTC 5 cut(s) 461, 477, 519, 570, 707
MseI TTAA 2 cut(s) 225, 474
MspI CCGG 3 cut(s) 6, 98, 680
MspR9I CCNGG 3 cut(s) 99, 159, 680
MvaI CCWGG 1 cut(s) 159
NciI CCSGG 2 cut(s) 99, 680
NcoI CCATGG 1 cut(s) 292
NdeII GATC 2 cut(s) 258, 600
NlaIII CATG 2 cut(s) 26, 296
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 560
PfeI GAWTC 4 cut(s) 17, 34, 121, 230
PfoI TCCNGGA 2 cut(s) 97, 157
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 2 cut(s) 162, 250
PpsI GAGTC 2 cut(s) 162, 250
PshAI GACNNNNGTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PstI CTGCAG 2 cut(s) 394, 667
PsuI RGATCY 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 225, 474
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 2 cut(s) 258, 600
SchI GAGTC 2 cut(s) 163, 251
ScrFI CCNGG 3 cut(s) 99, 159, 680
SetI ASST 9 cut(s) 270, 348, 388, 406, 439, 444, 472, 545, 616
SfaNI GCATC 2 cut(s) 139, 328
SfcI CTRYAG 2 cut(s) 390, 663
SsiI CCGC 3 cut(s) 86, 362, 702
SspMI CTAG 2 cut(s) 239, 284
StyD4I CCNGG 3 cut(s) 97, 157, 678
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 78, 510
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 539, 554
TfiI GAWTC 4 cut(s) 17, 34, 121, 230
Tru1I TTAA 2 cut(s) 225, 474
Tru9I TTAA 2 cut(s) 225, 474
TscAI CASTG 1 cut(s) 399
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 5 cut(s) 60, 399, 545, 596, 682
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 239, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.