Rmu_sc0003945.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003945.1
OG0017147
Physical Location & Seq
Reverse (-)
40528 .. 41699
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003945.1_g000017.1.cds

Sequence Viewer

Length: 828 bp
atggctgaaatgaaagattgccaccaccacgtagtggaaatcccggtggacgaagagcaccaacagaagctctcgtccgccatgaccatcatttcggcaatccaacaccacccattgatggaaatctccgagagccccggccatttgcttcttctcaagctctggcgaagggaagaagacctcttcggcaggcggatctctcggagggagacccgaatggatctcatccgccgcgaaatctttcaactctgttgcttcttcttgatatttcatgccttcttcttgacaatattgttcacttcttccgtaaactccgaggaagggagttgccagaagtggtggattccgagcattctttcggtttcgacttctattgtgtttgtggttcttgtgcaggtgaatctgtggaggtactggaaggtgtggggacagttgcagagggagaagattgagaatcgagctctggtgaggtgcattcaggagttgaggatgaagggagcgagctttgatctgtccaaggagccgcagagtgggaagaggttgaagagctccagtgttgagatcaagtggaagccgatcacttggtgctcgcagaacttgatcaccatctgccttgtttgctttgcaggtttgatttatgatctgctgcaacttgtgagctcaaggatctgcagcgactttgagctcgaggagtttccttttgatgatctttctcaaggtataccgttgatctttgctcttgtgagctcaaggatctgcagcgactttgagctcgaggagtttccttttgatgatctttctcaaggtataccgttgatctttctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

32.12

Weight (kDa)

5.79

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56120
fragaria_vesca FvH4_3g41800
prunus_persica Prupe.6G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0074881
rosa_laevigata RLG00000036513
rosa_multiflora Rmu_sc0003945.1_g000017
rosa_roxburghii Rroxscaffold_1G00006690
rosa_rugosa Rorug05G0435400
rosa_samantha Rh5AG492500 Rh5BG513900 Rh5CG537600 Rh5DG526100
rosa_wichuraiana Rw5G045640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 2 cut(s) 385, 617
AccB7I CCANNNNNTGG 1 cut(s) 34
AccI GTMKAC 2 cut(s) 721, 808
AccII CGCG 1 cut(s) 234
AciI CCGC 5 cut(s) 78, 193, 229, 232, 524
AclWI GGATC 4 cut(s) 203, 228, 674, 761
AcoI YGGCCR 1 cut(s) 139
AdeI CACNNNGTG 2 cut(s) 34, 585
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
AgsI TTSAA 2 cut(s) 245, 544
AluBI AGCT 9 cut(s) 70, 160, 461, 504, 549, 660, 685, 747, 772
AluI AGCT 9 cut(s) 70, 160, 461, 504, 549, 660, 685, 747, 772
Alw21I GWGCWC 8 cut(s) 60, 463, 551, 590, 662, 687, 749, 774
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 4 cut(s) 203, 228, 674, 761
Ama87I CYCGRG 2 cut(s) 686, 773
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 646, 672, 759
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
Asp700I GAANNNNTTC 1 cut(s) 240
AsuC2I CCSGG 2 cut(s) 44, 138
AsuHPI GGTGA 3 cut(s) 409, 478, 595
AvaI CYCGRG 2 cut(s) 686, 773
BanII GRGCYC 7 cut(s) 137, 463, 551, 662, 687, 749, 774
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 8 cut(s) 60, 463, 551, 590, 662, 687, 749, 774
BbvI GCAGC 3 cut(s) 633, 684, 771
BccI CCATC 3 cut(s) 95, 112, 614
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 2 cut(s) 44, 138
BcoDI GTCTC 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 670, 757
BfuAI ACCTGC 2 cut(s) 385, 617
BisI GCNGC 5 cut(s) 232, 524, 647, 673, 760
BlsI GCNGC 5 cut(s) 233, 525, 648, 674, 761
Bme1390I CCNGG 2 cut(s) 44, 138
BmeT110I CYCGRG 2 cut(s) 686, 773
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 2 cut(s) 44, 138
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 535
BpuEI CTTGAG 5 cut(s) 140, 646, 699, 733, 786
BpuMI CCSGG 2 cut(s) 44, 138
BsaAI YACGTR 1 cut(s) 31
BsaBI GATNNNNATC 2 cut(s) 122, 605
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 3 cut(s) 136, 315, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
Bse1I ACTGG 2 cut(s) 419, 552
Bse8I GATNNNNATC 2 cut(s) 122, 605
BseDI CCNNGG 3 cut(s) 136, 315, 516
BseGI GGATG 2 cut(s) 225, 495
BseJI GATNNNNATC 2 cut(s) 122, 605
BseLI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
BseNI ACTGG 2 cut(s) 419, 552
BseRI GAGGAG 2 cut(s) 704, 791
BseXI GCAGC 3 cut(s) 633, 684, 771
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 8 cut(s) 60, 463, 551, 590, 662, 687, 749, 774
BsiHKCI CYCGRG 2 cut(s) 686, 773
BsiSI CCGG 2 cut(s) 44, 138
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 2 cut(s) 351, 474
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 2 cut(s) 686, 773
Bsp1286I GDGCHC 9 cut(s) 60, 137, 463, 551, 590, 662, 687, 749, 774
BspACI CCGC 5 cut(s) 78, 193, 229, 232, 524
BspANI GGCC 1 cut(s) 141
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 2 cut(s) 674, 761
BspMI ACCTGC 2 cut(s) 385, 617
BspPI GGATC 4 cut(s) 203, 228, 674, 761
BspQI GCTCTTC 2 cut(s) 48, 539
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 419, 552
BssECI CCNNGG 3 cut(s) 136, 315, 516
BssNAI GTATAC 2 cut(s) 722, 809
BssT1I CCWWGG 1 cut(s) 516
Bst1107I GTATAC 2 cut(s) 722, 809
Bst4CI ACNGT 3 cut(s) 432, 726, 813
Bst6I CTCTTC 4 cut(s) 48, 188, 530, 539
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 191, 502, 590
BstF5I GGATG 2 cut(s) 225, 495
BstFNI CGCG 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 42, 136
BstSFI CTRYAG 2 cut(s) 670, 757
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 3 cut(s) 633, 684, 771
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 4 cut(s) 195, 220, 666, 753
BstYI RGATCY 4 cut(s) 195, 220, 666, 753
BstZ17I GTATAC 2 cut(s) 722, 809
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 2 cut(s) 225, 495
BtsIMutI CAGTG 1 cut(s) 559
BveI ACCTGC 2 cut(s) 385, 617
Cac8I GCNNGC 3 cut(s) 191, 502, 590
Csp6I GTAC 1 cut(s) 412
CviAII CATG 2 cut(s) 82, 272
CviQI GTAC 1 cut(s) 412
DraIII CACNNNGTG 2 cut(s) 34, 585
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 4 cut(s) 48, 188, 530, 539
EarI CTCTTC 4 cut(s) 48, 188, 530, 539
EciI GGCGGA 3 cut(s) 67, 208, 218
Ecl136II GAGCTC 6 cut(s) 461, 549, 660, 685, 747, 772
Eco130I CCWWGG 1 cut(s) 516
Eco24I GRGCYC 7 cut(s) 137, 463, 551, 662, 687, 749, 774
Eco31I GGTCTC 1 cut(s) 203
Eco53kI GAGCTC 6 cut(s) 461, 549, 660, 685, 747, 772
Eco88I CYCGRG 2 cut(s) 686, 773
EcoICRI GAGCTC 6 cut(s) 461, 549, 660, 685, 747, 772
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 7 cut(s) 137, 463, 551, 662, 687, 749, 774
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 2 cut(s) 85, 275
FaiI YATR 5 cut(s) 83, 273, 639, 722, 809
FaqI GGGAC 1 cut(s) 441
FatI CATG 2 cut(s) 81, 271
FbaI TGATCA 1 cut(s) 600
FblI GTMKAC 2 cut(s) 721, 808
Fnu4HI GCNGC 5 cut(s) 232, 524, 647, 673, 760
FokI GGATG 2 cut(s) 212, 502
FriOI GRGCYC 7 cut(s) 137, 463, 551, 662, 687, 749, 774
Fsp4HI GCNGC 5 cut(s) 232, 524, 647, 673, 760
GluI GCNGC 5 cut(s) 232, 524, 647, 673, 760
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 44, 138
Hin1II CATG 2 cut(s) 85, 275
HinfI GANTC 3 cut(s) 343, 400, 454
HpaII CCGG 2 cut(s) 44, 138
HphI GGTGA 3 cut(s) 409, 478, 595
Hpy166II GTNNAC 5 cut(s) 49, 297, 310, 722, 809
Hpy188I TCNGA 4 cut(s) 130, 204, 316, 348
Hpy188III TCNNGA 3 cut(s) 262, 283, 479
Hpy8I GTNNAC 5 cut(s) 49, 297, 310, 722, 809
HpyAV CCTTC 5 cut(s) 162, 286, 314, 412, 487
HpyCH4III ACNGT 3 cut(s) 432, 726, 813
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 7 cut(s) 394, 436, 474, 626, 649, 672, 759
HpyF10VI GCNNNNNNNGC 1 cut(s) 618
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 85, 275
Ksp22I TGATCA 1 cut(s) 600
LguI GCTCTTC 2 cut(s) 48, 539
LmnI GCTCC 3 cut(s) 497, 520, 554
Lsp1109I GCAGC 3 cut(s) 633, 684, 771
MaeII ACGT 1 cut(s) 30
MflI RGATCY 4 cut(s) 195, 220, 666, 753
MhlI GDGCHC 9 cut(s) 60, 137, 463, 551, 590, 662, 687, 749, 774
MmeI TCCRAC 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 240
MspI CCGG 2 cut(s) 44, 138
MspR9I CCNGG 2 cut(s) 44, 138
Mva1269I GAATGC 2 cut(s) 351, 474
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 618
NciI CCSGG 2 cut(s) 44, 138
NlaIII CATG 2 cut(s) 85, 275
NlaIV GGNNCC 1 cut(s) 522
PaeR7I CTCGAG 2 cut(s) 686, 773
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 2 cut(s) 48, 539
PctI GAATGC 2 cut(s) 351, 474
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 343, 400, 454
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 5 cut(s) 233, 525, 648, 674, 761
Ppu21I YACGTR 1 cut(s) 31
Psp124BI GAGCTC 6 cut(s) 463, 551, 662, 687, 749, 774
PspN4I GGNNCC 1 cut(s) 522
PspXI VCTCGAGB 2 cut(s) 686, 773
PstI CTGCAG 2 cut(s) 674, 761
PsuI RGATCY 4 cut(s) 195, 220, 666, 753
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 6 cut(s) 463, 551, 662, 687, 749, 774
SapI GCTCTTC 2 cut(s) 48, 539
SatI GCNGC 5 cut(s) 232, 524, 647, 673, 760
ScrFI CCNGG 2 cut(s) 44, 138
SduI GDGCHC 9 cut(s) 60, 137, 463, 551, 590, 662, 687, 749, 774
SfcI CTRYAG 2 cut(s) 670, 757
Sfr274I CTCGAG 2 cut(s) 686, 773
SlaI CTCGAG 2 cut(s) 686, 773
SmlI CTYRAG 7 cut(s) 155, 661, 686, 714, 748, 773, 801
SmoI CTYRAG 7 cut(s) 155, 661, 686, 714, 748, 773, 801
SsiI CCGC 5 cut(s) 78, 193, 229, 232, 524
SspI AATATT 1 cut(s) 291
SstI GAGCTC 6 cut(s) 463, 551, 662, 687, 749, 774
StyD4I CCNGG 2 cut(s) 42, 136
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 3 cut(s) 432, 726, 813
TaiI ACGT 1 cut(s) 33
TaqI TCGA 4 cut(s) 365, 457, 687, 774
TauI GCSGC 2 cut(s) 234, 526
TfiI GAWTC 3 cut(s) 343, 400, 454
TscAI CASTG 1 cut(s) 559
TseI GCWGC 3 cut(s) 646, 672, 759
TspDTI ATGAA 3 cut(s) 26, 260, 506
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 559
Van91I CCANNNNNTGG 1 cut(s) 34
XhoI CTCGAG 2 cut(s) 686, 773
XmiI GTMKAC 2 cut(s) 721, 808
XmnI GAANNNNTTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.