Rroxscaffold_1G00006690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017147
Physical Location & Seq
Forward (+)
8730343 .. 8732113
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006690.1

Sequence Viewer

Length: 675 bp
ATGGCTGAAATGAAAGATTGCCACCACCACGTAGTGGAAATCCCGGTGGACGAAGAGCACCAACAGAAGCTCTCGTCCGCCATGACCATCATTTCGGCAATCCAACACCACCCATTGATGGAAATCTCCGAGAGCCCCGGCCATTTGCTTCTTCTCAAGCTCTGGCGAAGAGAAGAAGACCTCTTCGGCCGGCGGATCGCTCGGAGGGAGACCCGAATGGATCTCATCCGCCGCGAAATCTTTCAACTTTGTTGCTTTTTCTTGATATTTCATGCCTTTTTCTTGACCATCTTGTTCACTTCTTCGGTAAACTCCGAGAAGGGGACTTGCCAGAAGTGGTGGATTCCGAGCATTCTTTCGGTTTCGACTTCTGTTGTGTTTGTGGTTCTTGTGCAGGTGAATCTGTGGAGGTACTGGAAGGTGTGGGGACAGTTGCAGAGGGAGAAGATTGAGAATCGAGCTCTGGTGAGGTGTATTCAGGAGTTGAGGATGAAGGGAGCGAGCTTTGATCTGTCCAAGGAGCCGCAGAGTGGGAAGAGGTTGAAGAGCTCCAGTGTTGAGATCAAGTGGAAGCCGATCACTTGGTGCTCGCAGAACTTGATCACCATCTGCCTTGTTTGCTTTGCAGGTTTGGTGTTTCCTGCATCCAAATTGATGCTTTGCAGCGGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

26.15

Weight (kDa)

9.13

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56120
fragaria_vesca FvH4_3g41800
prunus_persica Prupe.6G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0074881
rosa_laevigata RLG00000036513
rosa_multiflora Rmu_sc0003945.1_g000017
rosa_roxburghii Rroxscaffold_1G00006690
rosa_rugosa Rorug05G0435400
rosa_samantha Rh5AG492500 Rh5BG513900 Rh5CG537600 Rh5DG526100
rosa_wichuraiana Rw5G045640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 2 cut(s) 385, 617
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 1 cut(s) 234
AciI CCGC 6 cut(s) 78, 193, 229, 232, 524, 666
AclWI GGATC 2 cut(s) 203, 228
AcoI YGGCCR 2 cut(s) 139, 187
AdeI CACNNNGTG 2 cut(s) 34, 585
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
AgsI TTSAA 2 cut(s) 245, 544
AluBI AGCT 5 cut(s) 70, 160, 461, 504, 549
AluI AGCT 5 cut(s) 70, 160, 461, 504, 549
Alw21I GWGCWC 4 cut(s) 60, 463, 551, 590
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 203, 228
AoxI GGCC 2 cut(s) 139, 187
ApeKI GCWGC 1 cut(s) 663
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
Asp700I GAANNNNTTC 1 cut(s) 240
AsuC2I CCSGG 2 cut(s) 44, 138
AsuHPI GGTGA 3 cut(s) 409, 478, 595
BanII GRGCYC 3 cut(s) 137, 463, 551
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 4 cut(s) 60, 463, 551, 590
BccI CCATC 4 cut(s) 95, 112, 296, 614
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 2 cut(s) 44, 138
BcoDI GTCTC 1 cut(s) 203
BfuAI ACCTGC 2 cut(s) 385, 617
BisI GCNGC 4 cut(s) 232, 524, 664, 667
BlsI GCNGC 4 cut(s) 233, 525, 665, 668
Bme1390I CCNGG 2 cut(s) 44, 138
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 2 cut(s) 44, 138
BmsI GCATC 2 cut(s) 645, 653
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 44, 138
BsaAI YACGTR 1 cut(s) 31
BsaBI GATNNNNATC 2 cut(s) 122, 605
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 136, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 419, 552
Bse8I GATNNNNATC 2 cut(s) 122, 605
BseDI CCNNGG 2 cut(s) 136, 516
BseGI GGATG 3 cut(s) 225, 495, 644
BseJI GATNNNNATC 2 cut(s) 122, 605
BseLI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
BseNI ACTGG 2 cut(s) 419, 552
BseX3I CGGCCG 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 141, 189
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 4 cut(s) 60, 463, 551, 590
BsiSI CCGG 3 cut(s) 44, 138, 190
BslFI GGGAC 2 cut(s) 337, 441
BslI CCNNNNNNNGG 4 cut(s) 34, 118, 321, 530
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 2 cut(s) 337, 441
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 2 cut(s) 141, 189
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 5 cut(s) 60, 137, 463, 551, 590
Bsp143I GATC 6 cut(s) 195, 220, 508, 561, 576, 600
BspACI CCGC 6 cut(s) 78, 193, 229, 232, 524, 666
BspANI GGCC 2 cut(s) 141, 189
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 522
BspMI ACCTGC 2 cut(s) 385, 617
BspPI GGATC 2 cut(s) 203, 228
BspQI GCTCTTC 2 cut(s) 48, 539
BspTNI GGTCTC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 2 cut(s) 419, 552
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 136, 516
BssMI GATC 6 cut(s) 195, 220, 508, 561, 576, 600
BssT1I CCWWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 432
Bst6I CTCTTC 5 cut(s) 48, 163, 188, 530, 539
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 191, 502, 590
BstF5I GGATG 3 cut(s) 225, 495, 644
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 6 cut(s) 198, 223, 511, 564, 579, 603
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 195, 220, 508, 561, 576, 600
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 42, 136
BstUI CGCG 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZI CGGCCG 1 cut(s) 187
BsuRI GGCC 2 cut(s) 141, 189
BtsCI GGATG 3 cut(s) 225, 495, 644
BtsIMutI CAGTG 1 cut(s) 559
BveI ACCTGC 2 cut(s) 385, 617
Cac8I GCNNGC 3 cut(s) 191, 502, 590
Cfr10I RCCGGY 1 cut(s) 189
Csp6I GTAC 1 cut(s) 412
CviAII CATG 2 cut(s) 82, 272
CviQI GTAC 1 cut(s) 412
DpnI GATC 6 cut(s) 197, 222, 510, 563, 578, 602
DpnII GATC 6 cut(s) 195, 220, 508, 561, 576, 600
DraIII CACNNNGTG 2 cut(s) 34, 585
EaeI YGGCCR 2 cut(s) 139, 187
EagI CGGCCG 1 cut(s) 187
Eam1104I CTCTTC 5 cut(s) 48, 163, 188, 530, 539
EarI CTCTTC 5 cut(s) 48, 163, 188, 530, 539
EciI GGCGGA 3 cut(s) 67, 208, 218
Ecl136II GAGCTC 2 cut(s) 461, 549
EclXI CGGCCG 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 516
Eco24I GRGCYC 3 cut(s) 137, 463, 551
Eco31I GGTCTC 1 cut(s) 203
Eco52I CGGCCG 1 cut(s) 187
Eco53kI GAGCTC 2 cut(s) 461, 549
EcoICRI GAGCTC 2 cut(s) 461, 549
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 3 cut(s) 137, 463, 551
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 2 cut(s) 85, 275
FaiI YATR 2 cut(s) 83, 273
FaqI GGGAC 2 cut(s) 337, 441
FatI CATG 2 cut(s) 81, 271
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 4 cut(s) 232, 524, 664, 667
FokI GGATG 3 cut(s) 212, 502, 631
FriOI GRGCYC 3 cut(s) 137, 463, 551
Fsp4HI GCNGC 4 cut(s) 232, 524, 664, 667
GluI GCNGC 4 cut(s) 232, 524, 664, 667
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 2 cut(s) 141, 189
HapII CCGG 3 cut(s) 44, 138, 190
Hin1II CATG 2 cut(s) 85, 275
HinfI GANTC 3 cut(s) 343, 400, 454
HpaII CCGG 3 cut(s) 44, 138, 190
HphI GGTGA 3 cut(s) 409, 478, 595
Hpy166II GTNNAC 3 cut(s) 49, 297, 310
Hpy188I TCNGA 5 cut(s) 130, 204, 316, 348, 674
Hpy188III TCNNGA 3 cut(s) 262, 283, 479
Hpy8I GTNNAC 3 cut(s) 49, 297, 310
HpyAV CCTTC 3 cut(s) 313, 412, 487
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 394, 436, 626, 644, 663
HpyF10VI GCNNNNNNNGC 1 cut(s) 618
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 85, 275
KroI GCCGGC 1 cut(s) 189
KroNI GCCGGC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 6 cut(s) 195, 220, 508, 561, 576, 600
LguI GCTCTTC 2 cut(s) 48, 539
LmnI GCTCC 3 cut(s) 497, 520, 554
LweI GCATC 2 cut(s) 645, 653
MaeII ACGT 1 cut(s) 30
MalI GATC 6 cut(s) 197, 222, 510, 563, 578, 602
MboI GATC 6 cut(s) 195, 220, 508, 561, 576, 600
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 5 cut(s) 60, 137, 463, 551, 590
MluCI AATT 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 7 cut(s) 191, 198, 402, 432, 462, 480, 531
MroNI GCCGGC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 666
MspI CCGG 3 cut(s) 44, 138, 190
MspR9I CCNGG 2 cut(s) 44, 138
Mva1269I GAATGC 1 cut(s) 351
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 618
NaeI GCCGGC 1 cut(s) 191
NciI CCSGG 2 cut(s) 44, 138
NdeII GATC 6 cut(s) 195, 220, 508, 561, 576, 600
NgoMIV GCCGGC 1 cut(s) 189
NlaIII CATG 2 cut(s) 85, 275
NlaIV GGNNCC 1 cut(s) 522
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 2 cut(s) 48, 539
PctI GAATGC 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 343, 400, 454
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 4 cut(s) 233, 525, 665, 668
Ppu21I YACGTR 1 cut(s) 31
Psp124BI GAGCTC 2 cut(s) 463, 551
PspN4I GGNNCC 1 cut(s) 522
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 2 cut(s) 463, 551
SapI GCTCTTC 2 cut(s) 48, 539
SatI GCNGC 4 cut(s) 232, 524, 664, 667
Sau3AI GATC 6 cut(s) 195, 220, 508, 561, 576, 600
ScrFI CCNGG 2 cut(s) 44, 138
SduI GDGCHC 5 cut(s) 60, 137, 463, 551, 590
SfaNI GCATC 2 cut(s) 645, 653
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 650
SsiI CCGC 6 cut(s) 78, 193, 229, 232, 524, 666
SstI GAGCTC 2 cut(s) 463, 551
StyD4I CCNGG 2 cut(s) 42, 136
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 365, 457
TasI AATT 1 cut(s) 650
TauI GCSGC 3 cut(s) 234, 526, 669
TfiI GAWTC 3 cut(s) 343, 400, 454
TscAI CASTG 1 cut(s) 559
TseI GCWGC 1 cut(s) 663
TspDTI ATGAA 3 cut(s) 26, 260, 506
TspRI CASTG 1 cut(s) 559
Van91I CCANNNNNTGG 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.