Prupe.6G033100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017147
Physical Location & Seq
Forward (+)
2532103 .. 2534425
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G033100.1

Sequence Viewer

Length: 666 bp
ATGGCTGAGATGAAAGATGCCCACGTTGTGGAAATCCCAGTAGATGAAGAGCACCAGCAGAAACTCTCATCTGCCATGACCATCATTTCAGCTATCCAACACCACCCATTAATGGAAATCTCTGAGAGCCCCGGCCATCTCTTGCTTCTCAAGCTCTGGCGAAGAGAAGAAGACCTTTTTGGCCGGCGCATTGCCCGAAAAGAGTCCCGAATGGACTCCATCCGGCGCGAAATCTTTCAACTCTGCTGCTTCTTCTTAATCTTTCATGGGTTCTTCATGACCATCTTGTTCACATCTTCGGTTAATTCCGAAGAGCACATCTGTAAAAAATGGTGGATACCTAGCATTTTGTCGGTTTCGACCTCCTTTGTGTTTGTGTTTTTGGTGCAGGTGAATCTTTGCAGGTACTGGAAGGTATGGAACCAGTTGCAGAGGGAGAAGACTGACAACAGGGCACTCACTAGGTGCATTCAAGAGCTGAGGATGAAGGGGGCTAGCTTTGATTTGTCAAAGGAGCCACAGAGCGGGAAGAGGATGAAGAGCTCAAGTGTTGAGATCAAATGGAAGCCAGTGACTTGGTGCTCTCAGTATCTCATTACCATCTGCCTTGTTTGCTTTGCAGGTTTGGTGTTTCCGGTATCGAAATTCATGCTATGCGGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.95

Weight (kDa)

9.0

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56120
fragaria_vesca FvH4_3g41800
prunus_persica Prupe.6G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0074881
rosa_laevigata RLG00000036513
rosa_multiflora Rmu_sc0003945.1_g000017
rosa_roxburghii Rroxscaffold_1G00006690
rosa_rugosa Rorug05G0435400
rosa_samantha Rh5AG492500 Rh5BG513900 Rh5CG537600 Rh5DG526100
rosa_wichuraiana Rw5G045640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 379
Acc36I ACCTGC 3 cut(s) 379, 393, 611
AccB7I CCANNNNNTGG 1 cut(s) 28
AccBSI CCGCTC 1 cut(s) 525
AccII CGCG 1 cut(s) 228
AciI CCGC 2 cut(s) 525, 657
AcoI YGGCCR 2 cut(s) 133, 181
AcsI RAATTY 1 cut(s) 644
AdeI CACNNNGTG 2 cut(s) 28, 465
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 28, 112, 524
AgsI TTSAA 2 cut(s) 239, 473
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 5 cut(s) 92, 154, 478, 498, 543
AluI AGCT 5 cut(s) 92, 154, 478, 498, 543
Alw21I GWGCWC 4 cut(s) 54, 318, 545, 584
AlwNI CAGNNNCTG 1 cut(s) 408
AoxI GGCC 2 cut(s) 133, 181
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 644
AseI ATTAAT 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 2 cut(s) 189, 228
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 403
AsuNHI GCTAGC 1 cut(s) 494
BaeGI GKGCMC 1 cut(s) 457
BanII GRGCYC 2 cut(s) 131, 545
BbsI GAAGAC 2 cut(s) 177, 446
Bbv12I GWGCWC 4 cut(s) 54, 318, 545, 584
BbvCI CCTCAGC 1 cut(s) 479
BbvI GCAGC 1 cut(s) 233
BccI CCATC 5 cut(s) 89, 144, 227, 290, 608
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BciVI GTATCC 1 cut(s) 330
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 3 cut(s) 342, 462, 495
BfuAI ACCTGC 3 cut(s) 379, 393, 611
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 2 cut(s) 247, 658
BlsI GCNGC 2 cut(s) 248, 659
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 422, 516
BmrFI CCNGG 1 cut(s) 132
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 7
BmtI GCTAGC 1 cut(s) 498
BmuI ACTGGG 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 177, 446
Bpu10I CCTNAGC 1 cut(s) 479
BpuEI CTTGAG 2 cut(s) 134, 529
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 112, 524
Bse118I RCCGGY 1 cut(s) 183
Bse1I ACTGG 4 cut(s) 38, 413, 424, 569
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 3 cut(s) 219, 489, 540
BseLI CCNNNNNNNGG 3 cut(s) 28, 112, 524
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 3 cut(s) 114, 470, 599
BseNI ACTGG 4 cut(s) 38, 413, 424, 569
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 135, 183
BsiHKAI GWGCWC 4 cut(s) 54, 318, 545, 584
BsiSI CCGG 4 cut(s) 132, 184, 223, 635
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 28, 112, 524
BsmFI GGGAC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 2 cut(s) 135, 183
Bsp1286I GDGCHC 6 cut(s) 54, 131, 318, 457, 545, 584
Bsp143I GATC 1 cut(s) 555
BspACI CCGC 2 cut(s) 525, 657
BspANI GGCC 2 cut(s) 135, 183
BspCNI CTCAG 3 cut(s) 115, 471, 598
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 422, 516
BspMI ACCTGC 3 cut(s) 379, 393, 611
BspOI GCTAGC 1 cut(s) 498
BspQI GCTCTTC 3 cut(s) 42, 306, 533
BsrBI CCGCTC 1 cut(s) 525
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 183
BsrI ACTGG 4 cut(s) 38, 413, 424, 569
BssAI RCCGGY 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 555
Bst6I CTCTTC 5 cut(s) 42, 157, 306, 524, 533
BstC8I GCNNGC 2 cut(s) 185, 496
BstDEI CTNAG 4 cut(s) 6, 123, 479, 585
BstF5I GGATG 3 cut(s) 219, 489, 540
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 189, 228
BstKTI GATC 1 cut(s) 558
BstMBI GATC 1 cut(s) 555
BstMWI GCNNNNNNNGC 2 cut(s) 151, 612
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 457
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 2 cut(s) 177, 446
BstXI CCANNNNNNTGG 1 cut(s) 576
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 2 cut(s) 135, 183
BtsCI GGATG 3 cut(s) 219, 489, 540
BtsIMutI CAGTG 1 cut(s) 576
BveI ACCTGC 3 cut(s) 379, 393, 611
Cac8I GCNNGC 2 cut(s) 185, 496
CaiI CAGNNNCTG 1 cut(s) 408
CciI TCATGA 1 cut(s) 276
CfoI GCGC 2 cut(s) 189, 228
Cfr10I RCCGGY 1 cut(s) 183
Csp6I GTAC 1 cut(s) 406
CviAII CATG 4 cut(s) 76, 266, 277, 649
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 4 cut(s) 6, 123, 479, 585
DpnI GATC 1 cut(s) 557
DpnII GATC 1 cut(s) 555
DraIII CACNNNGTG 2 cut(s) 28, 465
EaeI YGGCCR 2 cut(s) 133, 181
Eam1104I CTCTTC 5 cut(s) 42, 157, 306, 524, 533
EarI CTCTTC 5 cut(s) 42, 157, 306, 524, 533
Ecl136II GAGCTC 1 cut(s) 543
Eco24I GRGCYC 2 cut(s) 131, 545
Eco53kI GAGCTC 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 543
EcoT38I GRGCYC 2 cut(s) 131, 545
FaeI CATG 4 cut(s) 79, 269, 280, 652
FaiI YATR 6 cut(s) 77, 267, 278, 418, 650, 655
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 190
FatI CATG 4 cut(s) 75, 265, 276, 648
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 2 cut(s) 247, 658
FokI GGATG 3 cut(s) 206, 496, 547
FriOI GRGCYC 2 cut(s) 131, 545
Fsp4HI GCNGC 2 cut(s) 247, 658
FspBI CTAG 3 cut(s) 342, 462, 495
GlaI GCGC 2 cut(s) 188, 227
GluI GCNGC 2 cut(s) 247, 658
HaeIII GGCC 2 cut(s) 135, 183
HapII CCGG 4 cut(s) 132, 184, 223, 635
HhaI GCGC 2 cut(s) 189, 228
Hin1II CATG 4 cut(s) 79, 269, 280, 652
Hin6I GCGC 2 cut(s) 187, 226
HinP1I GCGC 2 cut(s) 187, 226
HinfI GANTC 3 cut(s) 203, 215, 394
HpaII CCGG 4 cut(s) 132, 184, 223, 635
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 3 cut(s) 124, 310, 665
Hpy188III TCNNGA 3 cut(s) 207, 277, 473
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 406, 481
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 388, 402, 430, 468, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 612
HpyF3I CTNAG 4 cut(s) 6, 123, 479, 585
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 4 cut(s) 79, 269, 280, 652
HspAI GCGC 2 cut(s) 187, 226
KroI GCCGGC 1 cut(s) 183
KroNI GCCGGC 1 cut(s) 185
Kzo9I GATC 1 cut(s) 555
LguI GCTCTTC 3 cut(s) 42, 306, 533
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 7
MaeI CTAG 3 cut(s) 342, 462, 495
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 571
MalI GATC 1 cut(s) 557
MbiI CCGCTC 1 cut(s) 525
MboI GATC 1 cut(s) 555
MhlI GDGCHC 6 cut(s) 54, 131, 318, 457, 545, 584
MluCI AATT 2 cut(s) 304, 644
MlyI GAGTC 2 cut(s) 209, 212
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 4 cut(s) 373, 426, 474, 525
MroNI GCCGGC 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 110, 257, 303
MspI CCGG 4 cut(s) 132, 184, 223, 635
MspR9I CCNGG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 468
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 151, 612
NaeI GCCGGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 555
NgoMIV GCCGGC 1 cut(s) 183
NheI GCTAGC 1 cut(s) 494
NlaIII CATG 4 cut(s) 79, 269, 280, 652
NlaIV GGNNCC 2 cut(s) 422, 516
NmuCI GTSAC 1 cut(s) 571
PagI TCATGA 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 379
PciSI GCTCTTC 3 cut(s) 42, 306, 533
PctI GAATGC 1 cut(s) 468
PdiI GCCGGC 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 2 cut(s) 248, 659
PleI GAGTC 2 cut(s) 209, 211
PpsI GAGTC 2 cut(s) 209, 211
PshBI ATTAAT 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 545
PspN4I GGNNCC 2 cut(s) 422, 516
PstNI CAGNNNCTG 1 cut(s) 408
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SacI GAGCTC 1 cut(s) 545
SapI GCTCTTC 3 cut(s) 42, 306, 533
SaqAI TTAA 3 cut(s) 110, 257, 303
SatI GCNGC 2 cut(s) 247, 658
Sau3AI GATC 1 cut(s) 555
SchI GAGTC 2 cut(s) 209, 212
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 6 cut(s) 54, 131, 318, 457, 545, 584
SfaNI GCATC 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 149, 544
SmoI CTYRAG 2 cut(s) 149, 544
Sse9I AATT 2 cut(s) 304, 644
SsiI CCGC 2 cut(s) 525, 657
SspMI CTAG 3 cut(s) 342, 462, 495
SstI GAGCTC 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 130
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 359, 641
TasI AATT 2 cut(s) 304, 644
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 3 cut(s) 110, 257, 303
Tru9I TTAA 3 cut(s) 110, 257, 303
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 7 cut(s) 26, 60, 254, 265, 500, 551, 637
TspRI CASTG 1 cut(s) 576
Van91I CCANNNNNTGG 1 cut(s) 28
VspI ATTAAT 1 cut(s) 110
XapI RAATTY 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 3 cut(s) 342, 462, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.