Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56310 |
| fragaria_vesca | FvH4_3g46060 FvH4_3g46060 FvH4_3g46060 |
| malus_domestica | MD03G1001200.v1.1 |
| prunus_persica | Prupe.6G000700_v2.0.a1 |
| rosa_laevigata | RLG00000037084 |
| rosa_multiflora | Rmu_co8446957.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00000530 |
| rosa_rugosa | Rorug05G0489400 |
| rosa_samantha | Rh5AG541900 Rh5BG567500 Rh5CG589300 Rh5DG575700 |
| rosa_wichuraiana | Rw5G050410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 288 |
| Acc36I | ACCTGC | 1 cut(s) | 1190 |
| AccBSI | CCGCTC | 1 cut(s) | 851 |
| AccI | GTMKAC | 1 cut(s) | 1497 |
| AciI | CCGC | 4 cut(s) | 851, 869, 1217, 1359 |
| AclI | AACGTT | 2 cut(s) | 147, 1114 |
| AclWI | GGATC | 2 cut(s) | 1276, 1524 |
| AcsI | RAATTY | 4 cut(s) | 155, 1393, 1502, 1551 |
| AcuI | CTGAAG | 1 cut(s) | 1020 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1216 |
| AflII | CTTAAG | 1 cut(s) | 28 |
| AflIII | ACRYGT | 1 cut(s) | 345 |
| AgeI | ACCGGT | 1 cut(s) | 122 |
| AgsI | TTSAA | 8 cut(s) | 64, 174, 370, 707, 800, 862, 1287, 1487 |
| Alw21I | GWGCWC | 1 cut(s) | 771 |
| Alw26I | GTCTC | 4 cut(s) | 129, 270, 400, 1036 |
| AlwI | GGATC | 2 cut(s) | 1276, 1524 |
| AoxI | GGCC | 1 cut(s) | 1248 |
| ApeKI | GCWGC | 2 cut(s) | 1256, 1280 |
| ApoI | RAATTY | 4 cut(s) | 155, 1393, 1502, 1551 |
| AsiGI | ACCGGT | 1 cut(s) | 122 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 711, 1542 |
| AspLEI | GCGC | 1 cut(s) | 289 |
| AsuHPI | GGTGA | 5 cut(s) | 202, 599, 818, 824, 1478 |
| AsuNHI | GCTAGC | 2 cut(s) | 692, 976 |
| BaeGI | GKGCMC | 1 cut(s) | 993 |
| Bbv12I | GWGCWC | 1 cut(s) | 771 |
| BbvI | GCAGC | 2 cut(s) | 1243, 1267 |
| BccI | CCATC | 4 cut(s) | 586, 721, 1453, 1558 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 266, 300, 1072, 1106 |
| BclI | TGATCA | 2 cut(s) | 114, 829 |
| BcoDI | GTCTC | 4 cut(s) | 129, 270, 400, 1036 |
| BfaI | CTAG | 4 cut(s) | 603, 693, 977, 1190 |
| BfrI | CTTAAG | 1 cut(s) | 28 |
| BfuAI | ACCTGC | 1 cut(s) | 1190 |
| BisI | GCNGC | 2 cut(s) | 1257, 1281 |
| BlpI | GCTNAGC | 1 cut(s) | 336 |
| BlsI | GCNGC | 2 cut(s) | 1258, 1282 |
| BmsI | GCATC | 4 cut(s) | 496, 612, 1163, 1534 |
| BmtI | GCTAGC | 2 cut(s) | 696, 980 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 126, 158 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1006 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 336 |
| BpuEI | CTTGAG | 4 cut(s) | 43, 635, 1325, 1515 |
| BsaAI | YACGTR | 1 cut(s) | 512 |
| BsaBI | GATNNNNATC | 1 cut(s) | 299 |
| BsaI | GGTCTC | 1 cut(s) | 1036 |
| BsaJI | CCNNGG | 2 cut(s) | 70, 835 |
| BsaWI | WCCGGW | 1 cut(s) | 122 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1216 |
| Bse118I | RCCGGY | 1 cut(s) | 122 |
| Bse3DI | GCAATG | 1 cut(s) | 1062 |
| Bse8I | GATNNNNATC | 1 cut(s) | 299 |
| BseDI | CCNNGG | 2 cut(s) | 70, 835 |
| BseJI | GATNNNNATC | 1 cut(s) | 299 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1216 |
| BseMI | GCAATG | 1 cut(s) | 1062 |
| BseMII | CTCAG | 1 cut(s) | 786 |
| BseRI | GAGGAG | 1 cut(s) | 260 |
| BseSI | GKGCMC | 1 cut(s) | 993 |
| BseXI | GCAGC | 2 cut(s) | 1243, 1267 |
| BshFI | GGCC | 1 cut(s) | 1250 |
| BshTI | ACCGGT | 1 cut(s) | 122 |
| BsiHKAI | GWGCWC | 1 cut(s) | 771 |
| BsiSI | CCGG | 1 cut(s) | 123 |
| BslFI | GGGAC | 1 cut(s) | 210 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1216 |
| BsmAI | GTCTC | 4 cut(s) | 129, 270, 400, 1036 |
| BsmFI | GGGAC | 1 cut(s) | 210 |
| BsmI | GAATGC | 3 cut(s) | 289, 562, 726 |
| BsnI | GGCC | 1 cut(s) | 1250 |
| Bso31I | GGTCTC | 1 cut(s) | 1036 |
| Bsp1286I | GDGCHC | 2 cut(s) | 771, 993 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 336 |
| Bsp19I | CCATGG | 1 cut(s) | 70 |
| BspACI | CCGC | 4 cut(s) | 851, 869, 1217, 1359 |
| BspANI | GGCC | 1 cut(s) | 1250 |
| BspCNI | CTCAG | 1 cut(s) | 785 |
| BspHI | TCATGA | 2 cut(s) | 1297, 1546 |
| BspMI | ACCTGC | 1 cut(s) | 1190 |
| BspOI | GCTAGC | 2 cut(s) | 696, 980 |
| BspPI | GGATC | 2 cut(s) | 1276, 1524 |
| BspTI | CTTAAG | 1 cut(s) | 28 |
| BspTNI | GGTCTC | 1 cut(s) | 1036 |
| BsrBI | CCGCTC | 1 cut(s) | 851 |
| BsrDI | GCAATG | 1 cut(s) | 1062 |
| BsrFI | RCCGGY | 1 cut(s) | 122 |
| BssAI | RCCGGY | 1 cut(s) | 122 |
| BssECI | CCNNGG | 2 cut(s) | 70, 835 |
| BssNAI | GTATAC | 1 cut(s) | 1498 |
| BssT1I | CCWWGG | 1 cut(s) | 70 |
| Bst1107I | GTATAC | 1 cut(s) | 1498 |
| Bst4CI | ACNGT | 2 cut(s) | 307, 1022 |
| Bst6I | CTCTTC | 1 cut(s) | 1278 |
| BstAFI | CTTAAG | 1 cut(s) | 28 |
| BstBAI | YACGTR | 1 cut(s) | 512 |
| BstC8I | GCNNGC | 5 cut(s) | 694, 978, 1036, 1081, 1238 |
| BstDEI | CTNAG | 3 cut(s) | 336, 772, 1006 |
| BstDSI | CCRYGG | 1 cut(s) | 70 |
| BstHHI | GCGC | 1 cut(s) | 289 |
| BstMAI | GTCTC | 4 cut(s) | 129, 270, 400, 1036 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 332, 566, 698, 977, 982, 1256 |
| BstNSI | RCATGY | 2 cut(s) | 171, 1240 |
| BstSLI | GKGCMC | 1 cut(s) | 993 |
| BstV1I | GCAGC | 2 cut(s) | 1243, 1267 |
| BstX2I | RGATCY | 2 cut(s) | 1268, 1516 |
| BstYI | RGATCY | 2 cut(s) | 1268, 1516 |
| BstZ17I | GTATAC | 1 cut(s) | 1498 |
| BsuRI | GGCC | 1 cut(s) | 1250 |
| BtgI | CCRYGG | 1 cut(s) | 70 |
| BtgZI | GCGATG | 1 cut(s) | 1025 |
| BveI | ACCTGC | 1 cut(s) | 1190 |
| Cac8I | GCNNGC | 5 cut(s) | 694, 978, 1036, 1081, 1238 |
| CciI | TCATGA | 2 cut(s) | 1297, 1546 |
| CfoI | GCGC | 1 cut(s) | 289 |
| Cfr10I | RCCGGY | 1 cut(s) | 122 |
| CspAI | ACCGGT | 1 cut(s) | 122 |
| DdeI | CTNAG | 3 cut(s) | 336, 772, 1006 |
| DraI | TTTAAA | 1 cut(s) | 129 |
| Eam1104I | CTCTTC | 1 cut(s) | 1278 |
| EarI | CTCTTC | 1 cut(s) | 1278 |
| EciI | GGCGGA | 1 cut(s) | 1232 |
| Eco130I | CCWWGG | 1 cut(s) | 70 |
| Eco31I | GGTCTC | 1 cut(s) | 1036 |
| Eco57I | CTGAAG | 1 cut(s) | 1020 |
| EcoT14I | CCWWGG | 1 cut(s) | 70 |
| EcoT22I | ATGCAT | 1 cut(s) | 1178 |
| ErhI | CCWWGG | 1 cut(s) | 70 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 741, 773 |
| FaqI | GGGAC | 1 cut(s) | 210 |
| FbaI | TGATCA | 2 cut(s) | 114, 829 |
| FblI | GTMKAC | 1 cut(s) | 1497 |
| Fnu4HI | GCNGC | 2 cut(s) | 1257, 1281 |
| Fsp4HI | GCNGC | 2 cut(s) | 1257, 1281 |
| FspAI | RTGCGCAY | 1 cut(s) | 288 |
| FspBI | CTAG | 4 cut(s) | 603, 693, 977, 1190 |
| FspI | TGCGCA | 1 cut(s) | 288 |
| GlaI | GCGC | 1 cut(s) | 288 |
| GluI | GCNGC | 2 cut(s) | 1257, 1281 |
| HaeIII | GGCC | 1 cut(s) | 1250 |
| HapII | CCGG | 1 cut(s) | 123 |
| HhaI | GCGC | 1 cut(s) | 289 |
| Hin6I | GCGC | 1 cut(s) | 287 |
| HinP1I | GCGC | 1 cut(s) | 287 |
| HinfI | GANTC | 8 cut(s) | 4, 12, 412, 443, 472, 1147, 1412, 1543 |
| HpaII | CCGG | 1 cut(s) | 123 |
| HphI | GGTGA | 5 cut(s) | 202, 599, 818, 824, 1478 |
| Hpy166II | GTNNAC | 5 cut(s) | 351, 686, 794, 1205, 1498 |
| Hpy188I | TCNGA | 6 cut(s) | 9, 191, 391, 477, 717, 1211 |
| Hpy188III | TCNNGA | 4 cut(s) | 669, 1298, 1304, 1547 |
| Hpy8I | GTNNAC | 5 cut(s) | 351, 686, 794, 1205, 1498 |
| Hpy99I | CGWCG | 1 cut(s) | 278 |
| HpyAV | CCTTC | 1 cut(s) | 1395 |
| HpyCH4III | ACNGT | 2 cut(s) | 307, 1022 |
| HpyCH4IV | ACGT | 4 cut(s) | 147, 347, 511, 1114 |
| HpyCH4V | TGCA | 7 cut(s) | 179, 509, 1067, 1083, 1176, 1259, 1573 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 332, 566, 698, 977, 982, 1256 |
| HpyF3I | CTNAG | 3 cut(s) | 336, 772, 1006 |
| HpySE526I | ACGT | 4 cut(s) | 147, 347, 511, 1114 |
| HspAI | GCGC | 1 cut(s) | 287 |
| Ksp22I | TGATCA | 2 cut(s) | 114, 829 |
| LmnI | GCTCC | 2 cut(s) | 995, 1478 |
| Lsp1109I | GCAGC | 2 cut(s) | 1243, 1267 |
| LweI | GCATC | 4 cut(s) | 496, 612, 1163, 1534 |
| MaeI | CTAG | 4 cut(s) | 603, 693, 977, 1190 |
| MaeII | ACGT | 4 cut(s) | 147, 347, 511, 1114 |
| MaeIII | GTNAC | 7 cut(s) | 52, 107, 460, 751, 949, 1054, 1361 |
| MbiI | CCGCTC | 1 cut(s) | 851 |
| MboII | GAAGA | 4 cut(s) | 382, 1265, 1465, 1468 |
| MflI | RGATCY | 2 cut(s) | 1268, 1516 |
| MhlI | GDGCHC | 2 cut(s) | 771, 993 |
| MluCI | AATT | 7 cut(s) | 43, 155, 800, 1381, 1393, 1502, 1551 |
| MlyI | GAGTC | 1 cut(s) | 1421 |
| MmeI | TCCRAC | 1 cut(s) | 894 |
| Mph1103I | ATGCAT | 1 cut(s) | 1178 |
| MroXI | GAANNNNTTC | 2 cut(s) | 711, 1542 |
| MslI | CAYNNNNRTG | 1 cut(s) | 878 |
| MspA1I | CMGCKG | 1 cut(s) | 1359 |
| MspCI | CTTAAG | 1 cut(s) | 28 |
| MspI | CCGG | 1 cut(s) | 123 |
| MssI | GTTTAAAC | 1 cut(s) | 129 |
| Mva1269I | GAATGC | 3 cut(s) | 289, 562, 726 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 332, 566, 698, 977, 982, 1256 |
| NcoI | CCATGG | 1 cut(s) | 70 |
| NheI | GCTAGC | 2 cut(s) | 692, 976 |
| NsbI | TGCGCA | 1 cut(s) | 288 |
| NsiI | ATGCAT | 1 cut(s) | 1178 |
| NspI | RCATGY | 2 cut(s) | 171, 1240 |
| PaeI | GCATGC | 1 cut(s) | 1240 |
| PagI | TCATGA | 2 cut(s) | 1297, 1546 |
| PctI | GAATGC | 3 cut(s) | 289, 562, 726 |
| PdmI | GAANNNNTTC | 2 cut(s) | 711, 1542 |
| PfeI | GAWTC | 7 cut(s) | 4, 12, 412, 443, 472, 1147, 1543 |
| PinAI | ACCGGT | 1 cut(s) | 122 |
| PkrI | GCNGC | 2 cut(s) | 1258, 1282 |
| PleI | GAGTC | 1 cut(s) | 1420 |
| PmeI | GTTTAAAC | 1 cut(s) | 129 |
| PpsI | GAGTC | 1 cut(s) | 1420 |
| Ppu21I | YACGTR | 1 cut(s) | 512 |
| Psp1406I | AACGTT | 2 cut(s) | 147, 1114 |
| PsuI | RGATCY | 2 cut(s) | 1268, 1516 |
| RseI | CAYNNNNRTG | 1 cut(s) | 878 |
| SatI | GCNGC | 2 cut(s) | 1257, 1281 |
| SchI | GAGTC | 1 cut(s) | 1421 |
| SduI | GDGCHC | 2 cut(s) | 771, 993 |
| SfaNI | GCATC | 4 cut(s) | 496, 612, 1163, 1534 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 878 |
| SmlI | CTYRAG | 5 cut(s) | 22, 28, 614, 1304, 1530 |
| SmoI | CTYRAG | 5 cut(s) | 22, 28, 614, 1304, 1530 |
| SphI | GCATGC | 1 cut(s) | 1240 |
| Sse9I | AATT | 7 cut(s) | 43, 155, 800, 1381, 1393, 1502, 1551 |
| SsiI | CCGC | 4 cut(s) | 851, 869, 1217, 1359 |
| SspMI | CTAG | 4 cut(s) | 603, 693, 977, 1190 |
| StyI | CCWWGG | 1 cut(s) | 70 |
| TaaI | ACNGT | 2 cut(s) | 307, 1022 |
| TaiI | ACGT | 4 cut(s) | 150, 350, 514, 1117 |
| TaqI | TCGA | 9 cut(s) | 162, 273, 293, 446, 522, 1136, 1391, 1415, 1536 |
| TaqII | GACCGA | 1 cut(s) | 1060 |
| TasI | AATT | 7 cut(s) | 43, 155, 800, 1381, 1393, 1502, 1551 |
| TfiI | GAWTC | 7 cut(s) | 4, 12, 412, 443, 472, 1147, 1543 |
| TseI | GCWGC | 2 cut(s) | 1256, 1280 |
| TspGWI | ACGGA | 2 cut(s) | 1008, 1185 |
| Vha464I | CTTAAG | 1 cut(s) | 28 |
| XapI | RAATTY | 4 cut(s) | 155, 1393, 1502, 1551 |
| XceI | RCATGY | 2 cut(s) | 171, 1240 |
| XmiI | GTMKAC | 1 cut(s) | 1497 |
| XmnI | GAANNNNTTC | 2 cut(s) | 711, 1542 |
| XspI | CTAG | 4 cut(s) | 603, 693, 977, 1190 |
| Zsp2I | ATGCAT | 1 cut(s) | 1178 |