Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446957.1

Orthogroup ID

OG0016101

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 575

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 574 bp

atgaaggaggtgatgtcctttctggtgaggaggtgctacagcctgaaacacatccagcaagctcatgggttgatggtaccccgaggccttgacgaggacaacagactcctttcccgattcatcgaggcctgctcttgtcttggcttctcgaactacgcctactccgtcttcacccgcattcgggtgccaaacatttatctctacaacaccatgatcaaggctctacctccatccgaggccatttctgtttacaacaaaattcaagtcgccgccttgcgccccgatacctactccatcccctttgtgctcaaggccgtcgttcgcctcggcctcgccgcagttgggataggcagacaggtccactgccatagcattggcactgggctagacacccatgtcagcgtgatcactgccctcattcacatgtattcctcttgtgcatctgtttccgatgctcgcagactgttcgacggagctgcctttagggatgtcgctctctggaacgcaatgatcgccggatatgccaaactgggtgacgtagatactgcccgccatctgttcgaaacaatgcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

191

Amino Acids

21.23

Weight (kDa)

9.18

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56310
fragaria_vesca	FvH4_3g46060 FvH4_3g46060 FvH4_3g46060
malus_domestica	MD03G1001200.v1.1
prunus_persica	Prupe.6G000700_v2.0.a1
rosa_laevigata	RLG00000037084
rosa_multiflora	Rmu_co8446957.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000530
rosa_rugosa	Rorug05G0489400
rosa_samantha	Rh5AG541900 Rh5BG567500 Rh5CG589300 Rh5DG575700
rosa_wichuraiana	Rw5G050410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	2 cut(s)	76, 184
AciI	CCGC	4 cut(s)	175, 270, 336, 550
AcsI	RAATTY	1 cut(s)	258
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	4 cut(s)	94, 180, 181, 342
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	2 cut(s)	62, 476
AluI	AGCT	2 cut(s)	62, 476
Alw21I	GWGCWC	1 cut(s)	309
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	5 cut(s)	85, 126, 237, 312, 328
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	258
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
Asp718I	GGTACC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	4 cut(s)	22, 37, 163, 545
AsuII	TTCGAA	1 cut(s)	561
AvaI	CYCGRG	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	76, 184
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	4 cut(s)	67, 238, 302, 561
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	4 cut(s)	448, 458, 482, 492
BclI	TGATCA	2 cut(s)	213, 405
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	37
BisI	GCNGC	3 cut(s)	270, 336, 477
BlsI	GCNGC	3 cut(s)	271, 337, 478
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	78, 186
BmrI	ACTGGG	2 cut(s)	390, 539
BmsI	GCATC	2 cut(s)	442, 449
BmuI	ACTGGG	2 cut(s)	390, 539
BpiI	GAAGAC	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	82, 234, 325
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 146, 176
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 180, 181, 342
Bse1I	ACTGG	2 cut(s)	385, 534
Bse3DI	GCAATG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	82, 234, 325
BseGI	GGATG	4 cut(s)	51, 230, 294, 493
BseLI	CCNNNNNNNGG	4 cut(s)	94, 180, 181, 342
BseMI	GCAATG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	385, 534
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	5 cut(s)	87, 128, 239, 314, 330
BshNI	GGYRCC	2 cut(s)	76, 184
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	4 cut(s)	94, 180, 181, 342
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	5 cut(s)	87, 128, 239, 314, 330
BsoBI	CYCGRG	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	213, 405, 510
BspACI	CCGC	4 cut(s)	175, 270, 336, 550
BspANI	GGCC	5 cut(s)	87, 128, 239, 314, 330
BspLI	GGNNCC	2 cut(s)	78, 186
BspT104I	TTCGAA	1 cut(s)	561
BspT107I	GGYRCC	2 cut(s)	76, 184
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	385, 534
BssECI	CCNNGG	3 cut(s)	82, 234, 325
BssMI	GATC	3 cut(s)	213, 405, 510
Bst4CI	ACNGT	1 cut(s)	465
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	4 cut(s)	60, 130, 457, 550
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	4 cut(s)	51, 230, 294, 493
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	3 cut(s)	216, 408, 513
BstMBI	GATC	3 cut(s)	213, 405, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 521
BstNSI	RCATGY	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	374
BsuRI	GGCC	5 cut(s)	87, 128, 239, 314, 330
BtsCI	GGATG	4 cut(s)	51, 230, 294, 493
BtsI	GCAGTG	2 cut(s)	361, 408
BtsIMutI	CAGTG	3 cut(s)	361, 378, 408
Cac8I	GCNNGC	4 cut(s)	60, 130, 457, 550
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	4 cut(s)	65, 211, 395, 424
CviQI	GTAC	1 cut(s)	77
DpnI	GATC	3 cut(s)	215, 407, 512
DpnII	GATC	3 cut(s)	213, 405, 510
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
Eco147I	AGGCCT	2 cut(s)	87, 128
Eco47I	GGWCC	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	92
FaeI	CATG	4 cut(s)	68, 214, 398, 427
FaiI	YATR	6 cut(s)	66, 212, 369, 396, 425, 522
FatI	CATG	4 cut(s)	64, 210, 394, 423
FauI	CCCGC	2 cut(s)	182, 557
FbaI	TGATCA	2 cut(s)	213, 405
Fnu4HI	GCNGC	3 cut(s)	270, 336, 477
FokI	GGATG	4 cut(s)	38, 217, 281, 500
Fsp4HI	GCNGC	3 cut(s)	270, 336, 477
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	3 cut(s)	270, 336, 477
HaeIII	GGCC	5 cut(s)	87, 128, 239, 314, 330
HapII	CCGG	1 cut(s)	516
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	68, 214, 398, 427
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	105, 117
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	4 cut(s)	22, 37, 163, 545
Hpy166II	GTNNAC	2 cut(s)	250, 361
Hpy188I	TCNGA	2 cut(s)	235, 451
Hpy188III	TCNNGA	3 cut(s)	114, 148, 499
Hpy8I	GTNNAC	2 cut(s)	250, 361
Hpy99I	CGWCG	2 cut(s)	320, 473
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 521
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	68, 214, 398, 427
HspAI	GCGC	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	80
Ksp22I	TGATCA	2 cut(s)	213, 405
Kzo9I	GATC	3 cut(s)	213, 405, 510
LmnI	GCTCC	1 cut(s)	473
LpnPI	CCDG	9 cut(s)	8, 56, 68, 142, 341, 366, 484, 515, 529
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	2 cut(s)	442, 449
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	215, 407, 512
MboI	GATC	3 cut(s)	213, 405, 510
MboII	GAAGA	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	99
MslI	CAYNNNNRTG	2 cut(s)	182, 422
MspI	CCGG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	512, 521
NdeII	GATC	3 cut(s)	213, 405, 510
NlaIII	CATG	4 cut(s)	68, 214, 398, 427
NlaIV	GGNNCC	2 cut(s)	78, 186
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	561
PceI	AGGCCT	2 cut(s)	87, 128
PciI	ACATGT	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	271, 337, 478
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	78, 186
PspPI	GGNCC	1 cut(s)	358
PsrI	GAACNNNNNNTAC	2 cut(s)	143, 175
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	2 cut(s)	182, 422
SatI	GCNGC	3 cut(s)	270, 336, 477
Sau3AI	GATC	3 cut(s)	213, 405, 510
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	8 cut(s)	12, 35, 64, 229, 290, 360, 478, 540
SfaNI	GCATC	2 cut(s)	442, 449
SfcI	CTRYAG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	561
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	182, 422
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	258
SseBI	AGGCCT	2 cut(s)	87, 128
SsiI	CCGC	4 cut(s)	175, 270, 336, 550
SspMI	CTAG	1 cut(s)	386
StuI	AGGCCT	2 cut(s)	87, 128
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	4 cut(s)	123, 149, 468, 561
TasI	AATT	1 cut(s)	258
TauI	GCSGC	2 cut(s)	272, 338
TfiI	GAWTC	1 cut(s)	117
TscAI	CASTG	3 cut(s)	368, 385, 415
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	2 cut(s)	17, 109
TspGWI	ACGGA	2 cut(s)	154, 486
TspRI	CASTG	3 cut(s)	368, 385, 415
VpaK11BI	GGWCC	1 cut(s)	358
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.